EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000004880 (Gene tree)
Gene ID: 98386
Gene Symbol: Lbr
Alias: -
Full Name: lamin B receptor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 27712
Position: chr1: 181815335-181843046
Accession: 2138281
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000194415	-	606	-	ENSMUSP00000142232	202 (aa)	-	A0A0A6YY12
ENSMUST00000193030	-	648	-	ENSMUSP00000141335	132 (aa)	-	A0A0A6YW01
ENSMUST00000194302	-	569	-	-	- (aa)	-	-
ENSMUST00000195299	-	384	-	ENSMUSP00000142167	72 (aa)	-	A0A0A6YXW3
ENSMUST00000191878	-	669	-	ENSMUSP00000142133	122 (aa)	-	A0A0A6YXT6
ENSMUST00000193028	-	237	-	ENSMUSP00000141671	27 (aa)	-	A0A0A6YWS3
ENSMUST00000192075	-	2715	-	-	- (aa)	-	-
ENSMUST00000005003	-	3510	XM_006497070	ENSMUSP00000005003	626 (aa)	XP_006497133	Q3U9G9

Gene Model

Click here to download ENSMUSG00000004880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000004880's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000004880	Lbr	100	92.593	ENSG00000143815	LBR	100	92.157	Homo_sapiens
ENSMUSG00000004880	Lbr	84	36.181	YNL280C		99	41.387	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	20457914.	IDA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005637	nuclear inner membrane	21873635.	IBA	Component
GO:0005637	nuclear inner membrane	11591818.	TAS	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005652	nuclear lamina	11591818.	TAS	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0006694	steroid biosynthetic process	-	IEA	Process
GO:0006695	cholesterol biosynthetic process	18785926.	IDA	Process
GO:0006695	cholesterol biosynthetic process	22140257.	IMP	Process
GO:0006695	cholesterol biosynthetic process	-	ISO	Process
GO:0008139	nuclear localization sequence binding	-	ISO	Function
GO:0008202	steroid metabolic process	-	IEA	Process
GO:0008203	cholesterol metabolic process	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	10671519.	ISO	Component
GO:0016126	sterol biosynthetic process	21873635.	IBA	Process
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	-	IEA	Function
GO:0030223	neutrophil differentiation	22140257.	IMP	Process
GO:0031965	nuclear membrane	18785926.	IDA	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0050613	delta14-sterol reductase activity	18785926.22140257.	IMP	Function
GO:0050613	delta14-sterol reductase activity	-	ISO	Function
GO:0051087	chaperone binding	-	ISO	Function
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:0070087	chromo shadow domain binding	-	ISO	Function
GO:0070402	NADPH binding	-	ISO	Function