EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000160198	-	377	-	-	- (aa)	-	-
ENSMUST00000160312	-	582	-	-	- (aa)	-	-
ENSMUST00000005017	-	2245	XM_006501027	ENSMUSP00000005017	237 (aa)	XP_006501092	P51859
ENSMUST00000162631	-	763	-	ENSMUSP00000123832	84 (aa)	-	E0CYW7
ENSMUST00000161616	-	365	-	-	- (aa)	-	-
ENSMUST00000159492	-	933	-	ENSMUSP00000124803	202 (aa)	-	E0CXA0

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000004897	Hdgf	100	85.833	ENSG00000143321	HDGF	100	85.833	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001222	transcription corepressor binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0005515	protein binding	22212508.	IPI	Function
GO:0005615	extracellular space	15140875.	IDA	Component
GO:0005634	nucleus	14572309.22212508.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0008083	growth factor activity	9299445.	ISO	Function
GO:0008201	heparin binding	-	IEA	Function
GO:0009987	cellular process	15140875.	IDA	Process
GO:0017053	transcriptional repressor complex	-	ISO	Component
GO:0034504	protein localization to nucleus	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0098761	cellular response to interleukin-7	29581031.	IDA	Process