EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000005045 (Gene tree)
Gene ID: 269610
Gene Symbol: Chd5
Alias: 4930532L22Rik|B230399N07Rik
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 51544 bases
Position: chr4:152338651-152390194
Accession: 3036258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000132600	ResIII	PF04851.15	3.1e-07	1	1
ENSMUSP00000005175	ResIII	PF04851.15	3.2e-07	1	1
ENSMUSP00000030775	ResIII	PF04851.15	3.2e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000164662	-	9375	XM_006538933	ENSMUSP00000132600	1915 (aa)	XP_006538996	E9PYU4
ENSMUST00000136134	-	280	-	-	- (aa)	-	-
ENSMUST00000124423	-	6245	-	-	- (aa)	-	-
ENSMUST00000005175	-	9122	XM_006538931	ENSMUSP00000005175	1946 (aa)	XP_006538994	A2A8L1
ENSMUST00000030775	-	9486	XM_006538929	ENSMUSP00000030775	1952 (aa)	XP_006538992	E9PYL1

Gene Model

Click here to download ENSMUSG00000005045's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005045's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000005045	Chd5	91	73.153	ENSMUSG00000063870	Chd4	96	72.421
ENSMUSG00000005045	Chd5	97	70.202	ENSMUSG00000018474	Chd3	95	71.160
ENSMUSG00000005045	Chd5	51	34.657	ENSMUSG00000057133	Chd6	66	36.621

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000005045	Chd5	100	93.970	ENSG00000116254	CHD5	100	94.073	Homo_sapiens
ENSMUSG00000005045	Chd5	99	93.420	ENSAMEG00000009880	CHD5	99	93.461	Ailuropoda_melanoleuca
ENSMUSG00000005045	Chd5	94	78.887	ENSACIG00000012582	chd5	98	78.999	Amphilophus_citrinellus
ENSMUSG00000005045	Chd5	95	79.712	ENSAOCG00000020356	chd5	90	79.682	Amphiprion_ocellaris
ENSMUSG00000005045	Chd5	94	81.354	ENSAPLG00000015475	CHD5	98	81.495	Anas_platyrhynchos
ENSMUSG00000005045	Chd5	99	82.821	ENSACAG00000002441	CHD5	96	83.917	Anolis_carolinensis
ENSMUSG00000005045	Chd5	87	94.973	ENSANAG00000001078	CHD5	91	94.973	Aotus_nancymaae
ENSMUSG00000005045	Chd5	95	75.230	ENSACLG00000003012	chd5	96	75.734	Astatotilapia_calliptera
ENSMUSG00000005045	Chd5	84	85.714	ENSAMXG00000008921	chd5	94	85.200	Astyanax_mexicanus
ENSMUSG00000005045	Chd5	93	95.710	ENSBTAG00000040477	CHD5	100	95.710	Bos_taurus
ENSMUSG00000005045	Chd5	100	93.919	ENSCJAG00000000101	CHD5	100	94.021	Callithrix_jacchus
ENSMUSG00000005045	Chd5	93	95.597	ENSCAFG00000019545	CHD5	100	95.597	Canis_familiaris
ENSMUSG00000005045	Chd5	99	94.473	ENSCAFG00020008689	CHD5	97	94.526	Canis_lupus_dingo
ENSMUSG00000005045	Chd5	99	93.552	ENSCHIG00000015027	CHD5	97	93.552	Capra_hircus
ENSMUSG00000005045	Chd5	98	89.341	ENSTSYG00000033991	CHD5	99	89.907	Carlito_syrichta
ENSMUSG00000005045	Chd5	99	94.242	ENSCAPG00000009294	CHD5	99	94.500	Cavia_aperea
ENSMUSG00000005045	Chd5	99	94.242	ENSCPOG00000025080	CHD5	99	94.500	Cavia_porcellus
ENSMUSG00000005045	Chd5	100	94.021	ENSCCAG00000024756	CHD5	100	94.124	Cebus_capucinus
ENSMUSG00000005045	Chd5	100	93.613	ENSCATG00000043011	CHD5	100	93.613	Cercocebus_atys
ENSMUSG00000005045	Chd5	99	94.770	ENSCLAG00000010589	CHD5	99	94.870	Chinchilla_lanigera
ENSMUSG00000005045	Chd5	100	94.328	ENSCSAG00000000733	CHD5	100	94.430	Chlorocebus_sabaeus
ENSMUSG00000005045	Chd5	93	89.523	ENSCPBG00000019363	CHD5	100	89.413	Chrysemys_picta_bellii
ENSMUSG00000005045	Chd5	99	94.306	ENSCANG00000032302	CHD5	99	94.398	Colobus_angolensis_palliatus
ENSMUSG00000005045	Chd5	55	98.024	ENSCGRG00001011042	Chd5	100	98.024	Cricetulus_griseus_chok1gshd
ENSMUSG00000005045	Chd5	99	97.247	ENSCGRG00000011341	Chd5	100	97.247	Cricetulus_griseus_crigri
ENSMUSG00000005045	Chd5	94	67.797	ENSDARG00000025789	chd4b	96	68.391	Danio_rerio
ENSMUSG00000005045	Chd5	96	78.738	ENSDARG00000105083	chd5	97	80.261	Danio_rerio
ENSMUSG00000005045	Chd5	100	90.041	ENSDNOG00000046342	CHD5	100	89.729	Dasypus_novemcinctus
ENSMUSG00000005045	Chd5	99	94.354	ENSDORG00000005923	Chd5	99	94.453	Dipodomys_ordii
ENSMUSG00000005045	Chd5	99	92.886	ENSEASG00005021464	CHD5	97	95.984	Equus_asinus_asinus
ENSMUSG00000005045	Chd5	99	92.404	ENSECAG00000025043	CHD5	99	96.429	Equus_caballus
ENSMUSG00000005045	Chd5	77	99.535	ENSEEUG00000002772	CHD5	77	99.535	Erinaceus_europaeus
ENSMUSG00000005045	Chd5	90	80.412	ENSELUG00000010742	chd5	90	90.783	Esox_lucius
ENSMUSG00000005045	Chd5	100	93.868	ENSFCAG00000006319	CHD5	100	93.919	Felis_catus
ENSMUSG00000005045	Chd5	99	87.526	ENSFALG00000009740	CHD5	99	86.990	Ficedula_albicollis
ENSMUSG00000005045	Chd5	99	94.008	ENSFDAG00000012881	CHD5	96	94.007	Fukomys_damarensis
ENSMUSG00000005045	Chd5	100	86.602	ENSGALG00000000747	CHD5	100	86.195	Gallus_gallus
ENSMUSG00000005045	Chd5	56	82.797	ENSGACG00000004389	chd5	93	82.981	Gasterosteus_aculeatus
ENSMUSG00000005045	Chd5	96	87.093	ENSGAGG00000001590	CHD5	99	95.122	Gopherus_agassizii
ENSMUSG00000005045	Chd5	99	93.990	ENSGGOG00000000708	CHD5	99	94.087	Gorilla_gorilla
ENSMUSG00000005045	Chd5	96	75.614	ENSHBUG00000013453	chd5	96	76.545	Haplochromis_burtoni
ENSMUSG00000005045	Chd5	100	94.323	ENSHGLG00000018184	CHD5	100	94.427	Heterocephalus_glaber_female
ENSMUSG00000005045	Chd5	99	87.940	ENSHGLG00100013261	CHD5	98	87.103	Heterocephalus_glaber_male
ENSMUSG00000005045	Chd5	94	79.350	ENSIPUG00000005446	chd5	98	79.900	Ictalurus_punctatus
ENSMUSG00000005045	Chd5	99	94.453	ENSSTOG00000002778	CHD5	99	95.135	Ictidomys_tridecemlineatus
ENSMUSG00000005045	Chd5	100	95.206	ENSJJAG00000019072	Chd5	100	95.258	Jaculus_jaculus
ENSMUSG00000005045	Chd5	96	82.359	ENSLOCG00000004944	chd5	95	81.326	Lepisosteus_oculatus
ENSMUSG00000005045	Chd5	99	94.660	ENSLAFG00000006348	CHD5	99	94.704	Loxodonta_africana
ENSMUSG00000005045	Chd5	99	94.102	ENSMFAG00000033993	CHD5	100	95.322	Macaca_fascicularis
ENSMUSG00000005045	Chd5	99	94.200	ENSMMUG00000016838	CHD5	99	94.295	Macaca_mulatta
ENSMUSG00000005045	Chd5	100	94.277	ENSMNEG00000040044	CHD5	100	94.379	Macaca_nemestrina
ENSMUSG00000005045	Chd5	99	90.900	ENSMLEG00000039166	CHD5	99	90.993	Mandrillus_leucophaeus
ENSMUSG00000005045	Chd5	95	75.498	ENSMZEG00005000841	chd5	91	81.293	Maylandia_zebra
ENSMUSG00000005045	Chd5	99	86.861	ENSMGAG00000001055	CHD5	99	86.759	Meleagris_gallopavo
ENSMUSG00000005045	Chd5	100	90.886	ENSMICG00000017862	CHD5	100	90.835	Microcebus_murinus
ENSMUSG00000005045	Chd5	100	97.493	ENSMOCG00000011049	Chd5	100	97.493	Microtus_ochrogaster
ENSMUSG00000005045	Chd5	86	79.475	ENSMODG00000006294	CHD5	78	93.649	Monodelphis_domestica
ENSMUSG00000005045	Chd5	95	78.922	ENSMALG00000002831	chd5	96	78.218	Monopterus_albus
ENSMUSG00000005045	Chd5	100	99.436	MGP_CAROLIEiJ_G0026857	Chd5	100	99.436	Mus_caroli
ENSMUSG00000005045	Chd5	100	99.008	MGP_PahariEiJ_G0029205	Chd5	100	99.008	Mus_pahari
ENSMUSG00000005045	Chd5	100	99.693	MGP_SPRETEiJ_G0027850	Chd5	100	99.693	Mus_spretus
ENSMUSG00000005045	Chd5	99	88.203	ENSMPUG00000007122	CHD5	99	88.682	Mustela_putorius_furo
ENSMUSG00000005045	Chd5	99	94.551	ENSNGAG00000019812	Chd5	96	94.849	Nannospalax_galili
ENSMUSG00000005045	Chd5	99	91.671	ENSNLEG00000010320	CHD5	99	91.598	Nomascus_leucogenys
ENSMUSG00000005045	Chd5	86	86.877	ENSOPRG00000004304	CHD5	87	86.877	Ochotona_princeps
ENSMUSG00000005045	Chd5	99	94.080	ENSODEG00000010262	CHD5	99	94.180	Octodon_degus
ENSMUSG00000005045	Chd5	93	78.482	ENSONIG00000000619	chd5	93	78.493	Oreochromis_niloticus
ENSMUSG00000005045	Chd5	96	72.588	ENSOANG00000001819	CHD5	98	72.622	Ornithorhynchus_anatinus
ENSMUSG00000005045	Chd5	99	92.229	ENSOGAG00000005703	CHD5	99	92.543	Otolemur_garnettii
ENSMUSG00000005045	Chd5	99	92.702	ENSOARG00000013425	CHD5	99	92.735	Ovis_aries
ENSMUSG00000005045	Chd5	99	93.941	ENSPPAG00000034048	CHD5	99	94.038	Pan_paniscus
ENSMUSG00000005045	Chd5	100	93.357	ENSPPRG00000009453	CHD5	100	93.408	Panthera_pardus
ENSMUSG00000005045	Chd5	99	86.310	ENSPTIG00000013926	CHD5	99	86.575	Panthera_tigris_altaica
ENSMUSG00000005045	Chd5	100	93.922	ENSPTRG00000000075	CHD5	100	94.025	Pan_troglodytes
ENSMUSG00000005045	Chd5	100	94.328	ENSPANG00000006765	CHD5	100	94.430	Papio_anubis
ENSMUSG00000005045	Chd5	94	78.755	ENSPKIG00000004282	chd5	98	78.039	Paramormyrops_kingsleyae
ENSMUSG00000005045	Chd5	93	82.519	ENSPSIG00000006414	CHD5	99	82.319	Pelodiscus_sinensis
ENSMUSG00000005045	Chd5	69	97.451	ENSPEMG00000014799	Chd5	100	97.764	Peromyscus_maniculatus_bairdii
ENSMUSG00000005045	Chd5	99	90.808	ENSPCIG00000028310	CHD5	100	88.978	Phascolarctos_cinereus
ENSMUSG00000005045	Chd5	95	76.549	ENSPLAG00000005343	chd5	96	76.856	Poecilia_latipinna
ENSMUSG00000005045	Chd5	99	90.451	ENSPPYG00000001952	CHD5	99	91.169	Pongo_abelii
ENSMUSG00000005045	Chd5	100	93.766	ENSPCOG00000022930	CHD5	100	94.430	Propithecus_coquereli
ENSMUSG00000005045	Chd5	96	77.406	ENSPNYG00000003183	chd5	98	77.863	Pundamilia_nyererei
ENSMUSG00000005045	Chd5	100	98.207	ENSRNOG00000011268	Chd5	100	98.207	Rattus_norvegicus
ENSMUSG00000005045	Chd5	94	96.266	ENSRBIG00000032140	CHD5	95	96.266	Rhinopithecus_bieti
ENSMUSG00000005045	Chd5	99	94.301	ENSRROG00000041146	CHD5	99	94.398	Rhinopithecus_roxellana
ENSMUSG00000005045	Chd5	100	87.914	ENSSBOG00000001955	CHD5	100	95.074	Saimiri_boliviensis_boliviensis
ENSMUSG00000005045	Chd5	96	84.924	ENSSHAG00000018641	CHD5	99	85.005	Sarcophilus_harrisii
ENSMUSG00000005045	Chd5	97	78.352	ENSSFOG00015006296	chd5	90	92.093	Scleropages_formosus
ENSMUSG00000005045	Chd5	93	78.760	ENSSDUG00000017526	chd5	92	90.367	Seriola_dumerili
ENSMUSG00000005045	Chd5	97	80.843	ENSSPUG00000010622	CHD5	97	81.475	Sphenodon_punctatus
ENSMUSG00000005045	Chd5	100	94.012	ENSSSCG00000003366	CHD5	100	95.597	Sus_scrofa
ENSMUSG00000005045	Chd5	91	84.338	ENSTGUG00000002634	-	100	83.896	Taeniopygia_guttata
ENSMUSG00000005045	Chd5	53	80.509	ENSTNIG00000004346	chd5	99	80.709	Tetraodon_nigroviridis
ENSMUSG00000005045	Chd5	100	92.846	ENSTTRG00000010468	CHD5	100	93.157	Tursiops_truncatus
ENSMUSG00000005045	Chd5	98	94.501	ENSUAMG00000024509	CHD5	97	95.011	Ursus_americanus
ENSMUSG00000005045	Chd5	98	89.316	ENSUMAG00000024173	CHD5	98	89.751	Ursus_maritimus
ENSMUSG00000005045	Chd5	99	92.540	ENSVVUG00000026480	CHD5	96	97.154	Vulpes_vulpes
ENSMUSG00000005045	Chd5	96	80.086	ENSXETG00000002904	chd5	99	79.426	Xenopus_tropicalis
ENSMUSG00000005045	Chd5	59	83.871	ENSXCOG00000014202	chd5	94	83.871	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000785	chromatin	-	ISO	Component
GO:0000792	heterochromatin	23318260.	IDA	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	21931736.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	23948251.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	-	ISO	Process
GO:0007283	spermatogenesis	-	IEA	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0008285	negative regulation of cell proliferation	17289567.23318260.	IMP	Process
GO:0016581	NuRD complex	21931736.	IDA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0021895	cerebral cortex neuron differentiation	23948251.	IMP	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0035093	spermatogenesis, exchange of chromosomal proteins	24252660.	IMP	Process
GO:0042826	histone deacetylase binding	21931736.	IPI	Function
GO:0043967	histone H4 acetylation	24252660.	IMP	Process
GO:0045595	regulation of cell differentiation	23318260.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0060850	regulation of transcription involved in cell fate commitment	23318260.	IMP	Process
GO:0060850	regulation of transcription involved in cell fate commitment	-	ISO	Process
GO:0061628	H3K27me3 modified histone binding	23948251.	IDA	Function
GO:0061628	H3K27me3 modified histone binding	-	ISO	Function
GO:0098532	histone H3-K27 trimethylation	-	ISO	Process
GO:1901798	positive regulation of signal transduction by p53 class mediator	17289567.	IMP	Process