EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000005204 (Gene tree)
Gene ID: 80886
Gene Symbol: Senp3
Alias: Smt3ip1
Full Name: SUMO/sentrin specific peptidase 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 8970
Position: chr11: 69673115-69682084
Accession: 2158736
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000135372	-	517	-	-	- (aa)	-	-
ENSMUST00000153516	-	860	-	-	- (aa)	-	-
ENSMUST00000142206	-	387	-	-	- (aa)	-	-
ENSMUST00000005336	-	2313	XM_006534530	ENSMUSP00000005336	568 (aa)	XP_006534593	Q9EP97
ENSMUST00000066760	-	2219	-	ENSMUSP00000066581	568 (aa)	-	Q9EP97
ENSMUST00000130440	-	161	-	-	- (aa)	-	-
ENSMUST00000134942	-	693	-	ENSMUSP00000114791	169 (aa)	-	F6Z9L5
ENSMUST00000123084	-	1164	-	-	- (aa)	-	-
ENSMUST00000128355	-	614	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000005204's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005204's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000005204	Senp3	99	100.000	ENSG00000161956	SENP3	100	94.599	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004843	thiol-dependent ubiquitin-specific protease activity	11029585.	IDA	Function
GO:0005515	protein binding	11029585.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	11029585.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006508	proteolysis	-	IEA	Process
GO:0008233	peptidase activity	-	IEA	Function
GO:0008234	cysteine-type peptidase activity	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016926	protein desumoylation	21873635.	IBA	Process
GO:0019538	protein metabolic process	11029585.	IDA	Process
GO:0071339	MLL1 complex	-	ISO	Component