EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000005609 (Gene tree)
Gene ID: 22083
Gene Symbol: Ctr9
Alias: Sh2bp1|Tsbp|Tsp
Full Name: CTR9 homolog%2C Paf1/RNA polymerase II complex component
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 27427
Position: chr7: 111028951-111056377
Accession: 109345
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000005749	-	4300	-	ENSMUSP00000005749	1173 (aa)	-	Q62018
ENSMUST00000157025	-	1594	-	-	- (aa)	-	-
ENSMUST00000140220	-	535	-	-	- (aa)	-	-
ENSMUST00000143818	-	464	-	-	- (aa)	-	-
ENSMUST00000123681	-	392	-	-	- (aa)	-	-
ENSMUST00000146709	-	765	-	-	- (aa)	-	-
ENSMUST00000146558	-	437	-	-	- (aa)	-	-
ENSMUST00000152019	-	2987	-	-	- (aa)	-	-
ENSMUST00000209912	-	2412	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000005609's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005609's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000005609	Ctr9	100	97.532	ENSG00000198730	CTR9	100	97.532	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	19345177.	IMP	Process
GO:0000993	RNA polymerase II complex binding	21873635.	IBA	Function
GO:0001711	endodermal cell fate commitment	19345177.	IMP	Process
GO:0001826	inner cell mass cell differentiation	24036311.	IMP	Process
GO:0001829	trophectodermal cell differentiation	24036311.	IMP	Process
GO:0001832	blastocyst growth	24036311.	IGI	Process
GO:0001832	blastocyst growth	24036311.	IMP	Process
GO:0001835	blastocyst hatching	27869233.	IMP	Process
GO:0005515	protein binding	8636124.27864380.	IPI	Function
GO:0005515	protein binding	27749823.	IPI	Function
GO:0005634	nucleus	8636124.24036311.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0007259	JAK-STAT cascade	17911113.	IMP	Process
GO:0010390	histone monoubiquitination	-	ISO	Process
GO:0016055	Wnt signaling pathway	-	IEA	Process
GO:0016570	histone modification	-	IEA	Process
GO:0016593	Cdc73/Paf1 complex	21873635.	IBA	Component
GO:0016593	Cdc73/Paf1 complex	27749823.	IPI	Component
GO:0016593	Cdc73/Paf1 complex	-	ISO	Component
GO:0019827	stem cell population maintenance	19345177.	IMP	Process
GO:0019827	stem cell population maintenance	-	ISO	Process
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	-	ISO	Process
GO:0033523	histone H2B ubiquitination	-	ISO	Process
GO:0035327	transcriptionally active chromatin	19345177.	IDA	Component
GO:0042169	SH2 domain binding	8636124.	IDA	Function
GO:0045638	negative regulation of myeloid cell differentiation	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0051569	regulation of histone H3-K4 methylation	21873635.	IBA	Process
GO:0051571	positive regulation of histone H3-K4 methylation	19345177.	IMP	Process
GO:0051571	positive regulation of histone H3-K4 methylation	-	ISO	Process
GO:0070102	interleukin-6-mediated signaling pathway	17911113.	IMP	Process
GO:0071222	cellular response to lipopolysaccharide	17911113.	IDA	Process
GO:0080182	histone H3-K4 trimethylation	19345177.	IMP	Process
GO:0080182	histone H3-K4 trimethylation	-	ISO	Process
GO:1900364	negative regulation of mRNA polyadenylation	-	ISO	Process
GO:2000653	regulation of genetic imprinting	24036311.	IMP	Process
GO:2001162	positive regulation of histone H3-K79 methylation	-	ISO	Process
GO:2001168	positive regulation of histone H2B ubiquitination	-	ISO	Process