EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000005625 (Gene tree)
Gene ID: 19185
Gene Symbol: Psmd4
Alias: Af1|Mcb1|angiocidin|multiubiquitin-chain-binding protein
Full Name: proteasome (prosome%2C macropain) 26S subunit%2C non-ATPase%2C 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 9921
Position: chr3: 95032694-95042614
Accession: 1201670
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000143688	-	314	-	-	- (aa)	-	-
ENSMUST00000136868	-	1626	-	-	- (aa)	-	-
ENSMUST00000107237	-	1332	-	ENSMUSP00000102857	376 (aa)	-	O35226
ENSMUST00000071664	-	1276	-	ENSMUSP00000071589	379 (aa)	-	O35226
ENSMUST00000117355	-	1756	-	ENSMUSP00000113554	368 (aa)	-	O35226
ENSMUST00000140280	-	2120	-	-	- (aa)	-	-
ENSMUST00000147960	-	903	-	-	- (aa)	-	-
ENSMUST00000140348	-	695	XM_006501137	ENSMUSP00000114545	194 (aa)	XP_006501200	F7AI87

Gene Model

Click here to download ENSMUSG00000005625's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03050	Proteasome	KEGG
mmu05169	Epstein-Barr virus infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005625's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000005625	Psmd4	97	96.458	ENSG00000159352	PSMD4	100	100.000	Homo_sapiens
ENSMUSG00000005625	Psmd4	61	49.153	YHR200W	RPN10	88	50.424	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000502	proteasome complex	-	ISO	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008134	transcription factor binding	-	ISO	Function
GO:0008540	proteasome regulatory particle, base subcomplex	21873635.	IBA	Component
GO:0022624	proteasome accessory complex	16857966.	IDA	Component
GO:0031593	polyubiquitin modification-dependent protein binding	21873635.	IBA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0043248	proteasome assembly	21873635.	IBA	Process