EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000005682 (Gene tree)
Gene ID: 103135
Gene Symbol: Pan2
Alias: 1200014O24Rik|Usp52
Full Name: PAN2 poly(A) specific ribonuclease subunit
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 18024 bases
Position: chr10:128303335-128321358
Accession: 1918984
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000151874	RNase_T	PF00929.24	5.6e-19	1	1
ENSMUSP00000151216	RNase_T	PF00929.24	5.8e-19	1	1
ENSMUSP00000005825	RNase_T	PF00929.24	5.9e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000219721	-	4316	-	ENSMUSP00000151874	1173 (aa)	-	Q8BGF7
ENSMUST00000005825	-	4445	XM_006512985	ENSMUSP00000005825	1200 (aa)	XP_006513048	Q8BGF7
ENSMUST00000219255	-	4759	-	-	- (aa)	-	-
ENSMUST00000218137	-	1601	-	-	- (aa)	-	-
ENSMUST00000218315	-	4379	XM_006512988	ENSMUSP00000151216	1191 (aa)	XP_006513051	Q8BGF7
ENSMUST00000218496	-	5051	-	-	- (aa)	-	-
ENSMUST00000219801	-	3410	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000005682's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005682's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000005682	Pan2	100	75.000	ENSAPOG00000022955	pan2	100	74.855	Acanthochromis_polyacanthus
ENSMUSG00000005682	Pan2	100	95.840	ENSAMEG00000003824	PAN2	100	95.840	Ailuropoda_melanoleuca
ENSMUSG00000005682	Pan2	99	60.859	ENSACIG00000012858	PAN2	99	60.943	Amphilophus_citrinellus
ENSMUSG00000005682	Pan2	99	74.667	ENSACIG00000013079	pan2	99	74.917	Amphilophus_citrinellus
ENSMUSG00000005682	Pan2	100	75.000	ENSAOCG00000022334	pan2	99	75.248	Amphiprion_ocellaris
ENSMUSG00000005682	Pan2	100	75.062	ENSAPEG00000022760	pan2	99	75.309	Amphiprion_percula
ENSMUSG00000005682	Pan2	99	75.062	ENSATEG00000024030	pan2	100	75.458	Anabas_testudineus
ENSMUSG00000005682	Pan2	94	84.403	ENSAPLG00000005195	PAN2	100	84.670	Anas_platyrhynchos
ENSMUSG00000005682	Pan2	100	83.639	ENSACAG00000007067	PAN2	100	83.806	Anolis_carolinensis
ENSMUSG00000005682	Pan2	100	96.327	ENSANAG00000036468	PAN2	100	96.327	Aotus_nancymaae
ENSMUSG00000005682	Pan2	100	75.535	ENSACLG00000023674	pan2	99	75.667	Astatotilapia_calliptera
ENSMUSG00000005682	Pan2	99	59.110	ENSACLG00000023821	pan2	99	59.966	Astatotilapia_calliptera
ENSMUSG00000005682	Pan2	99	74.750	ENSAMXG00000005418	pan2	98	75.000	Astyanax_mexicanus
ENSMUSG00000005682	Pan2	100	95.743	ENSBTAG00000004376	PAN2	100	95.743	Bos_taurus
ENSMUSG00000005682	Pan2	100	96.007	ENSCJAG00000011141	PAN2	100	96.007	Callithrix_jacchus
ENSMUSG00000005682	Pan2	100	96.160	ENSCAFG00000000119	PAN2	100	96.160	Canis_familiaris
ENSMUSG00000005682	Pan2	100	95.458	ENSCAFG00020024865	PAN2	100	95.458	Canis_lupus_dingo
ENSMUSG00000005682	Pan2	100	95.274	ENSCHIG00000026935	PAN2	100	95.274	Capra_hircus
ENSMUSG00000005682	Pan2	100	95.854	ENSTSYG00000006927	PAN2	100	98.077	Carlito_syrichta
ENSMUSG00000005682	Pan2	100	96.262	ENSCPOG00000014918	PAN2	100	96.262	Cavia_porcellus
ENSMUSG00000005682	Pan2	100	96.090	ENSCCAG00000036637	PAN2	100	96.154	Cebus_capucinus
ENSMUSG00000005682	Pan2	100	96.411	ENSCATG00000045076	PAN2	100	96.411	Cercocebus_atys
ENSMUSG00000005682	Pan2	100	96.096	ENSCLAG00000011700	PAN2	100	96.096	Chinchilla_lanigera
ENSMUSG00000005682	Pan2	100	95.840	ENSCSAG00000005173	PAN2	100	95.840	Chlorocebus_sabaeus
ENSMUSG00000005682	Pan2	100	85.392	ENSCPBG00000014029	PAN2	100	85.392	Chrysemys_picta_bellii
ENSMUSG00000005682	Pan2	91	45.749	ENSCSAVG00000003833	-	99	52.463	Ciona_savignyi
ENSMUSG00000005682	Pan2	100	93.682	ENSCANG00000017798	PAN2	100	93.682	Colobus_angolensis_palliatus
ENSMUSG00000005682	Pan2	100	97.410	ENSCGRG00001019707	Pan2	100	97.410	Cricetulus_griseus_chok1gshd
ENSMUSG00000005682	Pan2	100	96.763	ENSCGRG00000009996	Pan2	100	96.763	Cricetulus_griseus_crigri
ENSMUSG00000005682	Pan2	100	71.040	ENSCSEG00000021529	pan2	99	71.679	Cynoglossus_semilaevis
ENSMUSG00000005682	Pan2	100	75.353	ENSCVAG00000010197	pan2	100	75.353	Cyprinodon_variegatus
ENSMUSG00000005682	Pan2	100	73.576	ENSDARG00000074675	pan2	99	73.863	Danio_rerio
ENSMUSG00000005682	Pan2	100	95.736	ENSDNOG00000010940	PAN2	100	95.736	Dasypus_novemcinctus
ENSMUSG00000005682	Pan2	93	42.018	FBgn0033352	PAN2	96	42.018	Drosophila_melanogaster
ENSMUSG00000005682	Pan2	75	96.639	ENSETEG00000012041	PAN2	82	96.639	Echinops_telfairi
ENSMUSG00000005682	Pan2	98	59.709	ENSEBUG00000002773	pan2	98	59.966	Eptatretus_burgeri
ENSMUSG00000005682	Pan2	100	95.372	ENSEASG00005005235	PAN2	100	95.372	Equus_asinus_asinus
ENSMUSG00000005682	Pan2	100	96.327	ENSECAG00000019814	PAN2	100	96.327	Equus_caballus
ENSMUSG00000005682	Pan2	99	74.257	ENSELUG00000024604	pan2	99	74.628	Esox_lucius
ENSMUSG00000005682	Pan2	100	96.173	ENSFCAG00000012021	PAN2	100	96.173	Felis_catus
ENSMUSG00000005682	Pan2	99	84.751	ENSFALG00000000464	PAN2	98	84.751	Ficedula_albicollis
ENSMUSG00000005682	Pan2	100	95.771	ENSFDAG00000017104	PAN2	100	95.771	Fukomys_damarensis
ENSMUSG00000005682	Pan2	90	75.817	ENSFHEG00000000157	pan2	96	75.817	Fundulus_heteroclitus
ENSMUSG00000005682	Pan2	100	73.267	ENSGMOG00000007249	pan2	99	73.680	Gadus_morhua
ENSMUSG00000005682	Pan2	100	84.904	ENSGALG00000031512	PAN2	100	84.904	Gallus_gallus
ENSMUSG00000005682	Pan2	100	75.748	ENSGAFG00000000284	pan2	100	75.914	Gambusia_affinis
ENSMUSG00000005682	Pan2	99	74.316	ENSGACG00000010722	pan2	99	74.814	Gasterosteus_aculeatus
ENSMUSG00000005682	Pan2	100	85.058	ENSGAGG00000007868	PAN2	100	85.058	Gopherus_agassizii
ENSMUSG00000005682	Pan2	100	96.087	ENSGGOG00000009115	PAN2	100	96.154	Gorilla_gorilla
ENSMUSG00000005682	Pan2	100	75.392	ENSHBUG00000005234	pan2	99	75.583	Haplochromis_burtoni
ENSMUSG00000005682	Pan2	99	95.819	ENSHGLG00000005647	PAN2	99	95.819	Heterocephalus_glaber_female
ENSMUSG00000005682	Pan2	99	95.569	ENSHGLG00100014057	PAN2	99	95.569	Heterocephalus_glaber_male
ENSMUSG00000005682	Pan2	99	74.503	ENSHCOG00000007920	pan2	99	74.752	Hippocampus_comes
ENSMUSG00000005682	Pan2	100	74.503	ENSIPUG00000011065	PAN2	99	74.503	Ictalurus_punctatus
ENSMUSG00000005682	Pan2	95	94.410	ENSSTOG00000015974	PAN2	100	94.410	Ictidomys_tridecemlineatus
ENSMUSG00000005682	Pan2	99	95.983	ENSJJAG00000013044	Pan2	97	95.970	Jaculus_jaculus
ENSMUSG00000005682	Pan2	99	75.396	ENSKMAG00000006192	pan2	99	75.559	Kryptolebias_marmoratus
ENSMUSG00000005682	Pan2	93	80.223	ENSLBEG00000015763	pan2	98	80.223	Labrus_bergylta
ENSMUSG00000005682	Pan2	99	72.431	ENSLACG00000018694	PAN2	99	72.512	Latimeria_chalumnae
ENSMUSG00000005682	Pan2	100	76.340	ENSLOCG00000004333	pan2	99	76.669	Lepisosteus_oculatus
ENSMUSG00000005682	Pan2	100	94.684	ENSLAFG00000014873	PAN2	100	94.684	Loxodonta_africana
ENSMUSG00000005682	Pan2	100	96.324	ENSMFAG00000002293	PAN2	100	96.324	Macaca_fascicularis
ENSMUSG00000005682	Pan2	100	96.324	ENSMMUG00000013482	PAN2	100	96.324	Macaca_mulatta
ENSMUSG00000005682	Pan2	100	96.411	ENSMNEG00000033264	PAN2	100	96.411	Macaca_nemestrina
ENSMUSG00000005682	Pan2	100	96.494	ENSMLEG00000037388	PAN2	100	96.494	Mandrillus_leucophaeus
ENSMUSG00000005682	Pan2	100	75.660	ENSMAMG00000001624	pan2	100	75.908	Mastacembelus_armatus
ENSMUSG00000005682	Pan2	98	60.988	ENSMZEG00005026472	pan2	98	60.988	Maylandia_zebra
ENSMUSG00000005682	Pan2	100	75.535	ENSMZEG00005026462	pan2	99	75.667	Maylandia_zebra
ENSMUSG00000005682	Pan2	97	85.060	ENSMGAG00000001439	PAN2	100	85.060	Meleagris_gallopavo
ENSMUSG00000005682	Pan2	99	97.236	ENSMAUG00000012602	Pan2	99	97.236	Mesocricetus_auratus
ENSMUSG00000005682	Pan2	100	96.327	ENSMICG00000017661	PAN2	100	98.077	Microcebus_murinus
ENSMUSG00000005682	Pan2	100	96.321	ENSMOCG00000007191	Pan2	100	96.321	Microtus_ochrogaster
ENSMUSG00000005682	Pan2	99	74.875	ENSMMOG00000009313	pan2	98	75.313	Mola_mola
ENSMUSG00000005682	Pan2	100	75.247	ENSMALG00000013377	pan2	100	75.493	Monopterus_albus
ENSMUSG00000005682	Pan2	100	99.417	MGP_CAROLIEiJ_G0015930	Pan2	100	99.417	Mus_caroli
ENSMUSG00000005682	Pan2	100	98.918	MGP_PahariEiJ_G0031154	Pan2	100	98.918	Mus_pahari
ENSMUSG00000005682	Pan2	100	99.833	MGP_SPRETEiJ_G0016755	Pan2	100	99.833	Mus_spretus
ENSMUSG00000005682	Pan2	100	96.411	ENSMPUG00000001383	PAN2	100	96.411	Mustela_putorius_furo
ENSMUSG00000005682	Pan2	100	94.825	ENSMLUG00000006737	PAN2	100	94.825	Myotis_lucifugus
ENSMUSG00000005682	Pan2	100	96.669	ENSNGAG00000007930	Pan2	100	96.669	Nannospalax_galili
ENSMUSG00000005682	Pan2	92	86.364	ENSNBRG00000006585	pan2	99	86.364	Neolamprologus_brichardi
ENSMUSG00000005682	Pan2	100	90.622	ENSNLEG00000017499	PAN2	100	96.154	Nomascus_leucogenys
ENSMUSG00000005682	Pan2	100	91.431	ENSMEUG00000010125	PAN2	100	91.431	Notamacropus_eugenii
ENSMUSG00000005682	Pan2	100	95.104	ENSOPRG00000001468	PAN2	100	95.104	Ochotona_princeps
ENSMUSG00000005682	Pan2	100	95.775	ENSODEG00000007203	PAN2	100	95.775	Octodon_degus
ENSMUSG00000005682	Pan2	100	74.877	ENSONIG00000016732	pan2	100	75.123	Oreochromis_niloticus
ENSMUSG00000005682	Pan2	82	73.922	ENSOANG00000005151	PAN2	99	74.423	Ornithorhynchus_anatinus
ENSMUSG00000005682	Pan2	100	95.934	ENSOCUG00000007227	PAN2	100	95.934	Oryctolagus_cuniculus
ENSMUSG00000005682	Pan2	100	74.403	ENSORLG00000015195	pan2	100	74.526	Oryzias_latipes
ENSMUSG00000005682	Pan2	100	74.568	ENSORLG00020000277	pan2	100	74.691	Oryzias_latipes_hni
ENSMUSG00000005682	Pan2	99	74.690	ENSORLG00015005193	pan2	99	74.814	Oryzias_latipes_hsok
ENSMUSG00000005682	Pan2	100	75.021	ENSOMEG00000022087	pan2	98	78.756	Oryzias_melastigma
ENSMUSG00000005682	Pan2	100	95.692	ENSOGAG00000030620	PAN2	100	95.692	Otolemur_garnettii
ENSMUSG00000005682	Pan2	100	95.341	ENSOARG00000009379	PAN2	100	95.341	Ovis_aries
ENSMUSG00000005682	Pan2	100	96.411	ENSPPAG00000001208	PAN2	100	96.411	Pan_paniscus
ENSMUSG00000005682	Pan2	100	96.256	ENSPPRG00000021586	PAN2	100	96.256	Panthera_pardus
ENSMUSG00000005682	Pan2	100	92.308	ENSPTIG00000012494	PAN2	100	92.308	Panthera_tigris_altaica
ENSMUSG00000005682	Pan2	100	96.411	ENSPTRG00000052054	PAN2	100	96.411	Pan_troglodytes
ENSMUSG00000005682	Pan2	92	96.119	ENSPANG00000018906	PAN2	100	96.154	Papio_anubis
ENSMUSG00000005682	Pan2	100	75.433	ENSPKIG00000003973	pan2	99	75.433	Paramormyrops_kingsleyae
ENSMUSG00000005682	Pan2	100	81.432	ENSPSIG00000003267	PAN2	100	81.515	Pelodiscus_sinensis
ENSMUSG00000005682	Pan2	100	74.751	ENSPMGG00000023186	pan2	100	74.834	Periophthalmus_magnuspinnatus
ENSMUSG00000005682	Pan2	100	96.346	ENSPEMG00000018505	Pan2	100	96.346	Peromyscus_maniculatus_bairdii
ENSMUSG00000005682	Pan2	91	69.048	ENSPMAG00000004731	pan2	100	69.048	Petromyzon_marinus
ENSMUSG00000005682	Pan2	100	92.077	ENSPCIG00000024643	PAN2	100	92.077	Phascolarctos_cinereus
ENSMUSG00000005682	Pan2	100	75.433	ENSPFOG00000008392	pan2	99	75.598	Poecilia_formosa
ENSMUSG00000005682	Pan2	100	75.350	ENSPLAG00000009198	pan2	99	75.515	Poecilia_latipinna
ENSMUSG00000005682	Pan2	100	75.727	ENSPMEG00000001484	pan2	100	75.894	Poecilia_mexicana
ENSMUSG00000005682	Pan2	100	75.602	ENSPREG00000000900	pan2	100	75.768	Poecilia_reticulata
ENSMUSG00000005682	Pan2	89	97.356	ENSPPYG00000004656	PAN2	100	97.356	Pongo_abelii
ENSMUSG00000005682	Pan2	92	95.122	ENSPCAG00000011047	PAN2	100	95.122	Procavia_capensis
ENSMUSG00000005682	Pan2	100	95.993	ENSPCOG00000018263	PAN2	100	96.244	Propithecus_coquereli
ENSMUSG00000005682	Pan2	94	96.667	ENSPVAG00000007591	PAN2	94	96.667	Pteropus_vampyrus
ENSMUSG00000005682	Pan2	99	75.730	ENSPNYG00000002629	pan2	99	75.750	Pundamilia_nyererei
ENSMUSG00000005682	Pan2	100	75.620	ENSPNAG00000027140	pan2	99	75.868	Pygocentrus_nattereri
ENSMUSG00000005682	Pan2	100	98.659	ENSRNOG00000032441	Pan2	100	98.659	Rattus_norvegicus
ENSMUSG00000005682	Pan2	100	96.327	ENSRBIG00000029591	PAN2	100	96.327	Rhinopithecus_bieti
ENSMUSG00000005682	Pan2	100	96.244	ENSRROG00000041950	PAN2	100	96.244	Rhinopithecus_roxellana
ENSMUSG00000005682	Pan2	100	96.327	ENSSBOG00000027343	PAN2	100	96.327	Saimiri_boliviensis_boliviensis
ENSMUSG00000005682	Pan2	92	90.771	ENSSHAG00000000122	PAN2	100	91.509	Sarcophilus_harrisii
ENSMUSG00000005682	Pan2	100	75.805	ENSSFOG00015017740	pan2	99	76.135	Scleropages_formosus
ENSMUSG00000005682	Pan2	100	74.220	ENSSMAG00000020901	pan2	100	74.442	Scophthalmus_maximus
ENSMUSG00000005682	Pan2	100	75.164	ENSSDUG00000001840	pan2	99	75.638	Seriola_dumerili
ENSMUSG00000005682	Pan2	100	75.103	ENSSLDG00000013866	pan2	100	75.331	Seriola_lalandi_dorsalis
ENSMUSG00000005682	Pan2	93	93.541	ENSSARG00000013350	PAN2	92	94.382	Sorex_araneus
ENSMUSG00000005682	Pan2	92	85.145	ENSSPUG00000004270	PAN2	99	85.145	Sphenodon_punctatus
ENSMUSG00000005682	Pan2	100	75.414	ENSSPAG00000019970	pan2	100	75.662	Stegastes_partitus
ENSMUSG00000005682	Pan2	100	95.739	ENSSSCG00000000393	PAN2	100	95.739	Sus_scrofa
ENSMUSG00000005682	Pan2	100	74.876	ENSTRUG00000014260	pan2	99	75.124	Takifugu_rubripes
ENSMUSG00000005682	Pan2	100	74.979	ENSTNIG00000012537	pan2	99	75.371	Tetraodon_nigroviridis
ENSMUSG00000005682	Pan2	80	95.853	ENSTTRG00000007150	PAN2	80	95.853	Tursiops_truncatus
ENSMUSG00000005682	Pan2	100	95.927	ENSUAMG00000026522	PAN2	100	95.927	Ursus_americanus
ENSMUSG00000005682	Pan2	100	96.272	ENSUMAG00000017020	PAN2	100	96.272	Ursus_maritimus
ENSMUSG00000005682	Pan2	78	98.030	ENSVPAG00000007309	PAN2	85	98.030	Vicugna_pacos
ENSMUSG00000005682	Pan2	100	96.077	ENSVVUG00000021878	PAN2	100	96.077	Vulpes_vulpes
ENSMUSG00000005682	Pan2	100	78.117	ENSXETG00000009434	pan2	100	78.596	Xenopus_tropicalis
ENSMUSG00000005682	Pan2	100	71.642	ENSXCOG00000014391	pan2	100	71.808	Xiphophorus_couchianus
ENSMUSG00000005682	Pan2	100	75.519	ENSXMAG00000011661	pan2	100	75.685	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	-	ISO	Function
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic	-	ISO	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	18625844.	IDA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005515	protein binding	18625844.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031251	PAN complex	21873635.	IBA	Component
GO:0031251	PAN complex	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function