EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000005683 (Gene tree)
Gene ID: 12974
Gene Symbol: Cs
Alias: 2610511A05Rik|9030605P22Rik|Cis|ahl4
Full Name: citrate synthase
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 24746
Position: chr10: 128337734-128362479
Accession: 88529
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000005826	-	2926	-	ENSMUSP00000005826	464 (aa)	-	Q9CZU6
ENSMUST00000218159	-	3003	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000005683's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00020	Citrate cycle (TCA cycle)	KEGG
mmu00630	Glyoxylate and dicarboxylate metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01210	2-Oxocarboxylic acid metabolism	KEGG
mmu01230	Biosynthesis of amino acids	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005683's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000005683	Cs	99	68.831	WBGene00000833	cts-1	99	68.831	Caenorhabditis_elegans
ENSMUSG00000005683	Cs	94	73.059	FBgn0261955	kdn	94	73.059	Drosophila_melanogaster
ENSMUSG00000005683	Cs	98	94.481	ENSG00000062485	CS	98	97.521	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004108	citrate (Si)-synthase activity	21873635.	IBA	Function
GO:0004108	citrate (Si)-synthase activity	15809022.	ISO	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	15809022.	ISO	Component
GO:0005759	mitochondrial matrix	21873635.	IBA	Component
GO:0005759	mitochondrial matrix	25378300.	IDA	Component
GO:0005759	mitochondrial matrix	-	ISO	Component
GO:0005975	carbohydrate metabolic process	21873635.	IBA	Process
GO:0005975	carbohydrate metabolic process	-	ISO	Process
GO:0006084	acetyl-CoA metabolic process	-	ISO	Process
GO:0006099	tricarboxylic acid cycle	21873635.	IBA	Process
GO:0006099	tricarboxylic acid cycle	-	ISO	Process
GO:0006101	citrate metabolic process	-	ISO	Process
GO:0006107	oxaloacetate metabolic process	-	ISO	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	18729827.	IDA	Function