EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000005698 (Gene tree)
Gene ID: 13018
Gene Symbol: Ctcf
Alias: -
Full Name: CCCTC-binding factor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 46355
Position: chr8: 105636568-105682922
Accession: 109447
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000005841	-	3782	XM_006530644	ENSMUSP00000005841	736 (aa)	XP_006530707	Q61164
ENSMUST00000128510	-	528	-	-	- (aa)	-	-
ENSMUST00000137735	-	469	-	-	- (aa)	-	-
ENSMUST00000132679	-	1554	-	-	- (aa)	-	-
ENSMUST00000156436	-	851	-	-	- (aa)	-	-
ENSMUST00000129388	-	729	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000005698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005698's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000005698	Ctcf	100	97.962	ENSG00000102974	CTCF	100	99.387	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	24105743.	IMP	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000775	chromosome, centromeric region	-	ISO	Component
GO:0000793	condensed chromosome	-	ISO	Component
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	22780989.	IDA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	11743158.12461525.15143173.15340049.	IDA	Function
GO:0003682	chromatin binding	23804403.24105743.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005515	protein binding	16949368.26961175.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	12011441.12075007.15572351.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006306	DNA methylation	12461525.	IDA	Process
GO:0006306	DNA methylation	24105743.	IMP	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006349	regulation of gene expression by genetic imprinting	12461525.15143173.	IDA	Process
GO:0006349	regulation of gene expression by genetic imprinting	14716017.	IMP	Process
GO:0006355	regulation of transcription, DNA-templated	15143173.	IDA	Process
GO:0007059	chromosome segregation	-	IEA	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0009048	dosage compensation by inactivation of X chromosome	11743158.	TAS	Process
GO:0010216	maintenance of DNA methylation	14716017.	IMP	Process
GO:0010628	positive regulation of gene expression	18614575.	IMP	Process
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0010629	negative regulation of gene expression	18614575.	IMP	Process
GO:0016584	nucleosome positioning	-	ISO	Process
GO:0031060	regulation of histone methylation	16951251.	IMP	Process
GO:0035065	regulation of histone acetylation	16951251.	IMP	Process
GO:0040029	regulation of gene expression, epigenetic	-	ISO	Process
GO:0040030	regulation of molecular function, epigenetic	-	ISO	Process
GO:0043035	chromatin insulator sequence binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	12075007.	IDA	Function
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0071459	protein localization to chromosome, centromeric region	-	ISO	Process
GO:1902895	positive regulation of pri-miRNA transcription by RNA polymerase II	-	ISO	Process