EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000005846 (Gene tree)
Gene ID
66409
Gene Symbol
Rsl1d1
Alias
2410005K20Rik
Full Name
ribosomal L1 domain containing 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
10362 bases
Position
chr16:11192970-11203331
Accession
1913659
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000113431Ribosomal_L1PF00687.211.2e-5111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000230002-715-ENSMUSP00000155495238 (aa)-A0A2R8VHW2
ENSMUST00000230232-415-ENSMUSP0000015527933 (aa)-A0A2R8VK65
ENSMUST00000129962-769--- (aa)--
ENSMUST00000124454-764--- (aa)--
ENSMUST00000119953-1945-ENSMUSP00000113431452 (aa)-Q8BVY0
Gene Model
Click here to download ENSMUSG00000005846's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000005846's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000005846Rsl1d19455.940ENSG00000171490RSL1D19971.134Homo_sapiens
ENSMUSG00000005846Rsl1d15446.502ENSAPOG00000004544rsl1d18442.515Acanthochromis_polyacanthus
ENSMUSG00000005846Rsl1d19156.195ENSAMEG00000009570RSL1D19756.133Ailuropoda_melanoleuca
ENSMUSG00000005846Rsl1d15242.857ENSACIG00000006608rsl1d19037.500Amphilophus_citrinellus
ENSMUSG00000005846Rsl1d15247.458ENSAOCG00000001548rsl1d18442.216Amphiprion_ocellaris
ENSMUSG00000005846Rsl1d15247.458ENSAPEG00000003334rsl1d18442.216Amphiprion_percula
ENSMUSG00000005846Rsl1d15246.610ENSATEG00000009247rsl1d18542.814Anabas_testudineus
ENSMUSG00000005846Rsl1d19040.700ENSAPLG00000004451RSL1D19940.700Anas_platyrhynchos
ENSMUSG00000005846Rsl1d19354.989ENSANAG00000028185-9954.262Aotus_nancymaae
ENSMUSG00000005846Rsl1d19950.820ENSANAG00000026520-9951.434Aotus_nancymaae
ENSMUSG00000005846Rsl1d19356.710ENSANAG00000034590-9956.212Aotus_nancymaae
ENSMUSG00000005846Rsl1d17441.916ENSACLG00000017535rsl1d18641.916Astatotilapia_calliptera
ENSMUSG00000005846Rsl1d17540.988ENSAMXG00000008624rsl1d18641.691Astyanax_mexicanus
ENSMUSG00000005846Rsl1d19951.844ENSBTAG00000014588RSL1D19952.977Bos_taurus
ENSMUSG00000005846Rsl1d19156.152ENSCJAG00000042606-9955.672Callithrix_jacchus
ENSMUSG00000005846Rsl1d19155.928ENSCJAG00000008375-9956.092Callithrix_jacchus
ENSMUSG00000005846Rsl1d19357.860ENSCAFG00000018865RSL1D19856.549Canis_familiaris
ENSMUSG00000005846Rsl1d18447.959ENSCAFG00020002457-8747.722Canis_lupus_dingo
ENSMUSG00000005846Rsl1d19359.584ENSCAFG00020024488-9856.513Canis_lupus_dingo
ENSMUSG00000005846Rsl1d19254.967ENSCHIG00000018658-9754.298Capra_hircus
ENSMUSG00000005846Rsl1d19555.505ENSCHIG00000009867-9954.605Capra_hircus
ENSMUSG00000005846Rsl1d19954.658ENSTSYG00000009276RSL1D19954.658Carlito_syrichta
ENSMUSG00000005846Rsl1d19260.870ENSCPOG00000010630RSL1D19361.098Cavia_porcellus
ENSMUSG00000005846Rsl1d19749.130ENSCCAG00000025197-9950.422Cebus_capucinus
ENSMUSG00000005846Rsl1d19954.694ENSCCAG00000017391-9954.694Cebus_capucinus
ENSMUSG00000005846Rsl1d19753.626ENSCCAG00000031641-9553.187Cebus_capucinus
ENSMUSG00000005846Rsl1d19454.299ENSCATG00000031153RSL1D19554.409Cercocebus_atys
ENSMUSG00000005846Rsl1d19658.099ENSCLAG00000010975RSL1D19759.607Chinchilla_lanigera
ENSMUSG00000005846Rsl1d19255.457ENSCSAG00000008255RSL1D19854.947Chlorocebus_sabaeus
ENSMUSG00000005846Rsl1d17763.441ENSCHOG00000010827RSL1D17663.441Choloepus_hoffmanni
ENSMUSG00000005846Rsl1d15354.812ENSCPBG00000004564RSL1D19257.005Chrysemys_picta_bellii
ENSMUSG00000005846Rsl1d15032.895ENSCING00000011810-10032.895Ciona_intestinalis
ENSMUSG00000005846Rsl1d19455.656ENSCANG00000029202RSL1D19954.839Colobus_angolensis_palliatus
ENSMUSG00000005846Rsl1d19669.794ENSCGRG00001014989Rsl1d110071.145Cricetulus_griseus_chok1gshd
ENSMUSG00000005846Rsl1d19669.794ENSCGRG00000001905Rsl1d110071.145Cricetulus_griseus_crigri
ENSMUSG00000005846Rsl1d15545.817ENSCSEG00000019693rsl1d16845.817Cynoglossus_semilaevis
ENSMUSG00000005846Rsl1d15845.693ENSCVAG00000000672rsl1d18341.617Cyprinodon_variegatus
ENSMUSG00000005846Rsl1d16041.758ENSDARG00000055868rsl1d19537.121Danio_rerio
ENSMUSG00000005846Rsl1d19847.844ENSDNOG00000040779-9949.692Dasypus_novemcinctus
ENSMUSG00000005846Rsl1d19848.460ENSDNOG00000004601-9850.308Dasypus_novemcinctus
ENSMUSG00000005846Rsl1d16547.541ENSDNOG00000047567-9047.541Dasypus_novemcinctus
ENSMUSG00000005846Rsl1d19849.327ENSDORG00000013432-9949.327Dipodomys_ordii
ENSMUSG00000005846Rsl1d15245.378ENSEBUG00000005400-5745.378Eptatretus_burgeri
ENSMUSG00000005846Rsl1d19356.371ENSEASG00005011499RSL1D19955.918Equus_asinus_asinus
ENSMUSG00000005846Rsl1d19355.940ENSECAG00000025036RSL1D19955.306Equus_caballus
ENSMUSG00000005846Rsl1d17162.366ENSEEUG00000015569-7962.366Erinaceus_europaeus
ENSMUSG00000005846Rsl1d17441.317ENSELUG00000019243rsl1d18843.798Esox_lucius
ENSMUSG00000005846Rsl1d19856.341ENSFCAG00000010114RSL1D19857.500Felis_catus
ENSMUSG00000005846Rsl1d19240.576ENSFALG00000003869RSL1D19439.827Ficedula_albicollis
ENSMUSG00000005846Rsl1d19759.955ENSFDAG00000011414RSL1D19759.955Fukomys_damarensis
ENSMUSG00000005846Rsl1d15246.610ENSFHEG00000017235rsl1d18140.419Fundulus_heteroclitus
ENSMUSG00000005846Rsl1d15447.131ENSGMOG00000013048rsl1d18647.131Gadus_morhua
ENSMUSG00000005846Rsl1d15453.279ENSGALG00000033690RSL1D19841.722Gallus_gallus
ENSMUSG00000005846Rsl1d15247.458ENSGAFG00000020794rsl1d18640.669Gambusia_affinis
ENSMUSG00000005846Rsl1d15844.403ENSGACG00000004483rsl1d17744.403Gasterosteus_aculeatus
ENSMUSG00000005846Rsl1d19455.292ENSGGOG00000013463RSL1D19855.230Gorilla_gorilla
ENSMUSG00000005846Rsl1d17441.916ENSHBUG00000001551rsl1d18541.317Haplochromis_burtoni
ENSMUSG00000005846Rsl1d19759.594ENSHGLG00000006774RSL1D19660.360Heterocephalus_glaber_female
ENSMUSG00000005846Rsl1d19759.368ENSHGLG00100017781RSL1D19660.135Heterocephalus_glaber_male
ENSMUSG00000005846Rsl1d15343.515ENSHCOG00000015208rsl1d16843.515Hippocampus_comes
ENSMUSG00000005846Rsl1d15945.318ENSIPUG00000001677rsl1d18141.916Ictalurus_punctatus
ENSMUSG00000005846Rsl1d18557.074ENSSTOG00000015400RSL1D19958.513Ictidomys_tridecemlineatus
ENSMUSG00000005846Rsl1d19058.118ENSJJAG00000012115Rsl1d19956.889Jaculus_jaculus
ENSMUSG00000005846Rsl1d15248.101ENSKMAG00000021908rsl1d18442.388Kryptolebias_marmoratus
ENSMUSG00000005846Rsl1d15342.975ENSLBEG00000001076rsl1d19336.512Labrus_bergylta
ENSMUSG00000005846Rsl1d15247.059ENSLOCG00000007416rsl1d15747.059Lepisosteus_oculatus
ENSMUSG00000005846Rsl1d19355.841ENSLAFG00000013664RSL1D19454.343Loxodonta_africana
ENSMUSG00000005846Rsl1d19256.570ENSMFAG00000037288RSL1D19855.789Macaca_fascicularis
ENSMUSG00000005846Rsl1d19256.570ENSMMUG00000019632RSL1D19971.975Macaca_mulatta
ENSMUSG00000005846Rsl1d19256.347ENSMNEG00000044196RSL1D19855.579Macaca_nemestrina
ENSMUSG00000005846Rsl1d19256.582ENSMLEG00000042058RSL1D19856.632Mandrillus_leucophaeus
ENSMUSG00000005846Rsl1d17440.719ENSMAMG00000004385rsl1d18541.617Mastacembelus_armatus
ENSMUSG00000005846Rsl1d15245.763ENSMZEG00005007150rsl1d18641.916Maylandia_zebra
ENSMUSG00000005846Rsl1d18943.796ENSMGAG00000000863RSL1D19543.972Meleagris_gallopavo
ENSMUSG00000005846Rsl1d19753.474ENSMICG00000008229RSL1D19753.669Microcebus_murinus
ENSMUSG00000005846Rsl1d19572.454ENSMOCG00000017724Rsl1d19971.396Microtus_ochrogaster
ENSMUSG00000005846Rsl1d15242.857ENSMMOG00000003730rsl1d18442.460Mola_mola
ENSMUSG00000005846Rsl1d18241.823ENSMODG00000029494-7941.867Monodelphis_domestica
ENSMUSG00000005846Rsl1d18147.895ENSMODG00000004625-9843.601Monodelphis_domestica
ENSMUSG00000005846Rsl1d15246.186ENSMALG00000009531rsl1d18541.617Monopterus_albus
ENSMUSG00000005846Rsl1d110090.728MGP_PahariEiJ_G0016164Rsl1d110092.053Mus_pahari
ENSMUSG00000005846Rsl1d110098.894MGP_SPRETEiJ_G0021352Rsl1d110098.894Mus_spretus
ENSMUSG00000005846Rsl1d19354.274ENSMPUG00000014548RSL1D19855.852Mustela_putorius_furo
ENSMUSG00000005846Rsl1d19856.674ENSMLUG00000000784RSL1D19856.674Myotis_lucifugus
ENSMUSG00000005846Rsl1d19267.209ENSNGAG00000009086-9964.989Nannospalax_galili
ENSMUSG00000005846Rsl1d19263.820ENSNGAG00000013578-9964.944Nannospalax_galili
ENSMUSG00000005846Rsl1d15245.763ENSNBRG00000002777rsl1d18541.317Neolamprologus_brichardi
ENSMUSG00000005846Rsl1d17360.000ENSNLEG00000012149-9659.341Nomascus_leucogenys
ENSMUSG00000005846Rsl1d19256.550ENSNLEG00000010196-9856.667Nomascus_leucogenys
ENSMUSG00000005846Rsl1d19953.928ENSOPRG00000004442-9853.928Ochotona_princeps
ENSMUSG00000005846Rsl1d17340.841ENSONIG00000019757rsl1d18938.439Oreochromis_niloticus
ENSMUSG00000005846Rsl1d18943.541ENSOANG00000009408-9243.826Ornithorhynchus_anatinus
ENSMUSG00000005846Rsl1d19256.763ENSOCUG00000004751RSL1D19755.672Oryctolagus_cuniculus
ENSMUSG00000005846Rsl1d15242.797ENSORLG00000002877rsl1d19136.842Oryzias_latipes
ENSMUSG00000005846Rsl1d18038.227ENSORLG00020006636rsl1d19135.870Oryzias_latipes_hni
ENSMUSG00000005846Rsl1d18038.227ENSORLG00015005427rsl1d19135.870Oryzias_latipes_hsok
ENSMUSG00000005846Rsl1d19955.031ENSOGAG00000015151RSL1D19855.439Otolemur_garnettii
ENSMUSG00000005846Rsl1d19553.333ENSOARG00000006923RSL1D19953.074Ovis_aries
ENSMUSG00000005846Rsl1d19455.940ENSPPAG00000039716RSL1D19855.649Pan_paniscus
ENSMUSG00000005846Rsl1d19357.642ENSPPRG00000005220RSL1D19857.292Panthera_pardus
ENSMUSG00000005846Rsl1d19057.273ENSPTIG00000005526RSL1D19257.727Panthera_tigris_altaica
ENSMUSG00000005846Rsl1d19455.724ENSPTRG00000007777RSL1D19855.439Pan_troglodytes
ENSMUSG00000005846Rsl1d19256.347ENSPANG00000023073RSL1D19855.368Papio_anubis
ENSMUSG00000005846Rsl1d18436.176ENSPKIG00000022687rsl1d19136.434Paramormyrops_kingsleyae
ENSMUSG00000005846Rsl1d15455.328ENSPSIG00000011642RSL1D19642.163Pelodiscus_sinensis
ENSMUSG00000005846Rsl1d15345.228ENSPMGG00000022261rsl1d19840.729Periophthalmus_magnuspinnatus
ENSMUSG00000005846Rsl1d19673.016ENSPEMG00000009523Rsl1d19773.469Peromyscus_maniculatus_bairdii
ENSMUSG00000005846Rsl1d18246.543ENSPCIG00000026851-8746.966Phascolarctos_cinereus
ENSMUSG00000005846Rsl1d17242.515ENSPFOG00000005017rsl1d19241.617Poecilia_formosa
ENSMUSG00000005846Rsl1d17441.916ENSPLAG00000000482rsl1d17241.317Poecilia_latipinna
ENSMUSG00000005846Rsl1d15247.034ENSPMEG00000007032rsl1d18141.018Poecilia_mexicana
ENSMUSG00000005846Rsl1d15246.610ENSPREG00000016619rsl1d18139.489Poecilia_reticulata
ENSMUSG00000005846Rsl1d19156.984ENSPPYG00000007112RSL1D19856.695Pongo_abelii
ENSMUSG00000005846Rsl1d19552.955ENSPPYG00000019335-9653.515Pongo_abelii
ENSMUSG00000005846Rsl1d18050.000ENSPCAG00000011264-8250.000Procavia_capensis
ENSMUSG00000005846Rsl1d17656.983ENSPCOG00000022456RSL1D19956.545Propithecus_coquereli
ENSMUSG00000005846Rsl1d19554.989ENSPVAG00000005014RSL1D19655.699Pteropus_vampyrus
ENSMUSG00000005846Rsl1d15245.763ENSPNYG00000002850rsl1d18541.018Pundamilia_nyererei
ENSMUSG00000005846Rsl1d17941.389ENSPNAG00000011848rsl1d18941.436Pygocentrus_nattereri
ENSMUSG00000005846Rsl1d17173.438ENSRNOG00000032439Rsl1d15273.438Rattus_norvegicus
ENSMUSG00000005846Rsl1d110084.868ENSRNOG00000048608Rsl1d1l19984.868Rattus_norvegicus
ENSMUSG00000005846Rsl1d110084.868ENSRNOG00000061236LOC1083482989984.868Rattus_norvegicus
ENSMUSG00000005846Rsl1d19256.667ENSRBIG00000030317RSL1D19856.421Rhinopithecus_bieti
ENSMUSG00000005846Rsl1d19556.399ENSRROG00000033658RSL1D19856.421Rhinopithecus_roxellana
ENSMUSG00000005846Rsl1d17548.276ENSSBOG00000029329-8848.806Saimiri_boliviensis_boliviensis
ENSMUSG00000005846Rsl1d19156.920ENSSBOG00000035910-9956.008Saimiri_boliviensis_boliviensis
ENSMUSG00000005846Rsl1d19752.301ENSSBOG00000028384-9952.033Saimiri_boliviensis_boliviensis
ENSMUSG00000005846Rsl1d15249.580ENSSFOG00015011354rsl1d16949.580Scleropages_formosus
ENSMUSG00000005846Rsl1d15144.589ENSSMAG00000007957rsl1d16644.589Scophthalmus_maximus
ENSMUSG00000005846Rsl1d15244.915ENSSDUG00000008447rsl1d17841.018Seriola_dumerili
ENSMUSG00000005846Rsl1d15245.339ENSSLDG00000008293rsl1d18440.719Seriola_lalandi_dorsalis
ENSMUSG00000005846Rsl1d19439.957ENSSPUG00000007525RSL1D19939.957Sphenodon_punctatus
ENSMUSG00000005846Rsl1d15246.610ENSSPAG00000009755rsl1d18442.433Stegastes_partitus
ENSMUSG00000005846Rsl1d19254.923ENSSSCG00000023984RSL1D19855.165Sus_scrofa
ENSMUSG00000005846Rsl1d15453.279ENSTGUG00000005174RSL1D19953.279Taeniopygia_guttata
ENSMUSG00000005846Rsl1d15346.091ENSTRUG00000016970rsl1d16846.091Takifugu_rubripes
ENSMUSG00000005846Rsl1d15245.000ENSTNIG00000012925rsl1d16745.000Tetraodon_nigroviridis
ENSMUSG00000005846Rsl1d18048.492ENSTBEG00000014678RSL1D19749.123Tupaia_belangeri
ENSMUSG00000005846Rsl1d19156.706ENSTTRG00000011629RSL1D19455.044Tursiops_truncatus
ENSMUSG00000005846Rsl1d19156.941ENSUAMG00000004470RSL1D19855.094Ursus_americanus
ENSMUSG00000005846Rsl1d18350.673ENSUMAG00000003994RSL1D19752.466Ursus_maritimus
ENSMUSG00000005846Rsl1d19154.739ENSVVUG00000024962-9453.626Vulpes_vulpes
ENSMUSG00000005846Rsl1d19357.860ENSVVUG00000018170-9856.549Vulpes_vulpes
ENSMUSG00000005846Rsl1d17345.783ENSXETG00000033365-9541.611Xenopus_tropicalis
ENSMUSG00000005846Rsl1d15147.414ENSXMAG00000025111rsl1d16747.414Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000470maturation of LSU-rRNA21873635.IBAProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding-ISOFunction
GO:0005515protein binding17158916.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005730nucleolus17158916.IDAComponent
GO:0005730nucleolus-ISOComponent
GO:003068690S preribosome21873635.IBAComponent
GO:0032880regulation of protein localization17158916.ISOProcess
GO:0042981regulation of apoptotic process-ISOProcess
GO:0048027mRNA 5'-UTR binding-ISOFunction
GO:2000772regulation of cellular senescence-ISOProcess

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