EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000006005 (Gene tree)
Gene ID: 108989
Gene Symbol: Tpr
Alias: 2610029M07Rik
Full Name: translocated promoter region%2C nuclear basket protein
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 57098
Position: chr1: 150392838-150449935
Accession: 1922066
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000124484	-	575	-	ENSMUSP00000121991	144 (aa)	-	F6R5D8
ENSMUST00000151563	-	1940	-	ENSMUSP00000116012	611 (aa)	-	F6RX08
ENSMUST00000150752	-	1892	-	-	- (aa)	-	-
ENSMUST00000147769	-	362	-	-	- (aa)	-	-
ENSMUST00000131701	-	572	-	-	- (aa)	-	-
ENSMUST00000141827	-	559	-	-	- (aa)	-	-
ENSMUST00000132257	-	934	-	-	- (aa)	-	-
ENSMUST00000124973	-	7430	XM_006529065	ENSMUSP00000117616	2431 (aa)	XP_006529128	F6ZDS4
ENSMUST00000152967	-	3200	-	-	- (aa)	-	-
ENSMUST00000130779	-	229	-	-	- (aa)	-	-
ENSMUST00000119161	-	7480	-	ENSMUSP00000112606	2357 (aa)	-	Q7M739
ENSMUST00000132522	-	576	-	-	- (aa)	-	-
ENSMUST00000128417	-	1332	-	-	- (aa)	-	-
ENSMUST00000138718	-	470	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000006005's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu05200	Pathways in cancer	KEGG
mmu05216	Thyroid cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000006005's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000006005	Tpr	99	93.492	ENSG00000047410	TPR	99	93.620	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000776	kinetochore	-	IEA	Component
GO:0003682	chromatin binding	-	ISO	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005515	protein binding	12513910.26094769.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	12424524.12513910.	IDA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005643	nuclear pore	21873635.	IBA	Component
GO:0005643	nuclear pore	12513910.	IDA	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005868	cytoplasmic dynein complex	-	ISO	Component
GO:0006404	RNA import into nucleus	-	ISO	Process
GO:0006405	RNA export from nucleus	-	ISO	Process
GO:0006606	protein import into nucleus	-	IEA	Process
GO:0006611	protein export from nucleus	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007094	mitotic spindle assembly checkpoint	21873635.	IBA	Process
GO:0007094	mitotic spindle assembly checkpoint	-	ISO	Process
GO:0010965	regulation of mitotic sister chromatid separation	-	ISO	Process
GO:0015031	protein transport	-	IEA	Process
GO:0015631	tubulin binding	-	ISO	Function
GO:0016020	membrane	-	IEA	Component
GO:0017056	structural constituent of nuclear pore	21873635.	IBA	Function
GO:0017056	structural constituent of nuclear pore	-	ISO	Function
GO:0019898	extrinsic component of membrane	-	ISO	Component
GO:0031072	heat shock protein binding	-	ISO	Function
GO:0031453	positive regulation of heterochromatin assembly	-	ISO	Process
GO:0031965	nuclear membrane	-	ISO	Component
GO:0031990	mRNA export from nucleus in response to heat stress	-	ISO	Process
GO:0032880	regulation of protein localization	-	ISO	Process
GO:0034399	nuclear periphery	22401879.	IDA	Component
GO:0034399	nuclear periphery	-	ISO	Component
GO:0034605	cellular response to heat	-	ISO	Process
GO:0035457	cellular response to interferon-alpha	12513910.	IDA	Process
GO:0042307	positive regulation of protein import into nucleus	-	ISO	Process
GO:0042405	nuclear inclusion body	12513910.	IDA	Component
GO:0042405	nuclear inclusion body	-	ISO	Component
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0044615	nuclear pore nuclear basket	-	ISO	Component
GO:0045947	negative regulation of translational initiation	-	ISO	Process
GO:0046827	positive regulation of protein export from nucleus	-	ISO	Process
GO:0046832	negative regulation of RNA export from nucleus	-	ISO	Process
GO:0051019	mitogen-activated protein kinase binding	-	ISO	Function
GO:0051028	mRNA transport	-	IEA	Process
GO:0051301	cell division	-	IEA	Process
GO:0070840	dynein complex binding	-	ISO	Function
GO:0070849	response to epidermal growth factor	-	ISO	Process
GO:0072686	mitotic spindle	-	ISO	Component
GO:0090267	positive regulation of mitotic cell cycle spindle assembly checkpoint	-	ISO	Process
GO:0090316	positive regulation of intracellular protein transport	-	ISO	Process
GO:1901673	regulation of mitotic spindle assembly	-	ISO	Process