EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000006587 (Gene tree)
Gene ID: 30927
Gene Symbol: Snai3
Alias: Smuc|Snail-related gene from muscle cells|Zfp293
Full Name: snail family zinc finger 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 6526 bases
Position: chr8:122454208-122460733
Accession: 1353563
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000006762	zf-C2H2	PF00096.26	4e-24	1	4
ENSMUSP00000006762	zf-C2H2	PF00096.26	4e-24	2	4
ENSMUSP00000006762	zf-C2H2	PF00096.26	4e-24	3	4
ENSMUSP00000006762	zf-C2H2	PF00096.26	4e-24	4	4
ENSMUSP00000006762	zf-met	PF12874.7	4.1e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000006762	-	1628	XM_006531074	ENSMUSP00000006762	287 (aa)	XP_006531137	Q9QY31

Gene Model

Click here to download ENSMUSG00000006587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000006587's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000006587	Snai3	99	46.552	ENSMUSG00000022676	Snai2	99	46.599
ENSMUSG00000006587	Snai3	100	40.667	ENSMUSG00000042821	Snai1	99	41.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000006587	Snai3	100	71.233	ENSG00000185669	SNAI3	100	73.288	Homo_sapiens
ENSMUSG00000006587	Snai3	99	46.207	ENSANAG00000021163	SNAI2	99	46.939	Aotus_nancymaae
ENSMUSG00000006587	Snai3	100	72.945	ENSANAG00000032748	SNAI3	100	72.945	Aotus_nancymaae
ENSMUSG00000006587	Snai3	99	66.090	ENSBTAG00000017528	SNAI3	99	66.090	Bos_taurus
ENSMUSG00000006587	Snai3	100	64.726	ENSCAFG00000029458	SNAI3	100	66.781	Canis_familiaris
ENSMUSG00000006587	Snai3	100	65.068	ENSCAFG00020004719	SNAI3	100	67.123	Canis_lupus_dingo
ENSMUSG00000006587	Snai3	99	65.744	ENSCHIG00000018087	SNAI3	99	65.744	Capra_hircus
ENSMUSG00000006587	Snai3	91	68.061	ENSTSYG00000025594	SNAI3	91	69.962	Carlito_syrichta
ENSMUSG00000006587	Snai3	100	72.260	ENSCATG00000031714	SNAI3	100	72.260	Cercocebus_atys
ENSMUSG00000006587	Snai3	100	67.466	ENSCSAG00000003047	SNAI3	100	67.466	Chlorocebus_sabaeus
ENSMUSG00000006587	Snai3	99	56.902	ENSCPBG00000023474	SNAI3	99	56.902	Chrysemys_picta_bellii
ENSMUSG00000006587	Snai3	93	70.480	ENSCANG00000031124	SNAI3	83	70.480	Colobus_angolensis_palliatus
ENSMUSG00000006587	Snai3	100	87.456	ENSCGRG00001011389	Snai3	100	87.456	Cricetulus_griseus_chok1gshd
ENSMUSG00000006587	Snai3	100	87.456	ENSCGRG00000014932	Snai3	100	87.456	Cricetulus_griseus_crigri
ENSMUSG00000006587	Snai3	79	48.485	ENSDNOG00000035204	-	100	51.724	Dasypus_novemcinctus
ENSMUSG00000006587	Snai3	92	67.164	ENSEASG00005000614	SNAI3	88	69.403	Equus_asinus_asinus
ENSMUSG00000006587	Snai3	99	68.729	ENSECAG00000012131	SNAI3	99	70.790	Equus_caballus
ENSMUSG00000006587	Snai3	100	61.301	ENSEEUG00000000841	SNAI3	100	61.301	Erinaceus_europaeus
ENSMUSG00000006587	Snai3	99	44.595	ENSELUG00000021795	SNAI2	78	45.608	Esox_lucius
ENSMUSG00000006587	Snai3	99	49.141	ENSELUG00000018742	-	99	49.141	Esox_lucius
ENSMUSG00000006587	Snai3	100	64.605	ENSFCAG00000043885	SNAI3	100	64.605	Felis_catus
ENSMUSG00000006587	Snai3	99	57.143	ENSGAGG00000023571	SNAI3	99	57.143	Gopherus_agassizii
ENSMUSG00000006587	Snai3	100	71.918	ENSGGOG00000012559	SNAI3	100	73.973	Gorilla_gorilla
ENSMUSG00000006587	Snai3	99	45.161	ENSIPUG00000000131	snai2	99	47.931	Ictalurus_punctatus
ENSMUSG00000006587	Snai3	100	77.740	ENSJJAG00000019934	Snai3	100	79.452	Jaculus_jaculus
ENSMUSG00000006587	Snai3	99	46.713	ENSLOCG00000005992	SNAI2	99	47.059	Lepisosteus_oculatus
ENSMUSG00000006587	Snai3	100	66.096	ENSLAFG00000005117	SNAI3	100	67.466	Loxodonta_africana
ENSMUSG00000006587	Snai3	100	72.945	ENSMFAG00000032064	SNAI3	100	72.945	Macaca_fascicularis
ENSMUSG00000006587	Snai3	100	72.945	ENSMMUG00000008716	SNAI3	100	72.945	Macaca_mulatta
ENSMUSG00000006587	Snai3	100	72.945	ENSMNEG00000045515	SNAI3	100	72.945	Macaca_nemestrina
ENSMUSG00000006587	Snai3	91	71.161	ENSMLEG00000033191	SNAI3	91	71.161	Mandrillus_leucophaeus
ENSMUSG00000006587	Snai3	100	87.108	ENSMAUG00000001685	Snai3	100	87.108	Mesocricetus_auratus
ENSMUSG00000006587	Snai3	100	86.760	ENSMOCG00000003536	Snai3	100	86.760	Microtus_ochrogaster
ENSMUSG00000006587	Snai3	99	46.552	MGP_CAROLIEiJ_G0020483	Snai2	99	46.599	Mus_caroli
ENSMUSG00000006587	Snai3	100	98.258	MGP_CAROLIEiJ_G0031662	Snai3	100	98.258	Mus_caroli
ENSMUSG00000006587	Snai3	99	46.552	MGP_PahariEiJ_G0016188	Snai2	99	46.599	Mus_pahari
ENSMUSG00000006587	Snai3	100	95.833	MGP_PahariEiJ_G0023260	Snai3	100	95.833	Mus_pahari
ENSMUSG00000006587	Snai3	100	99.652	MGP_SPRETEiJ_G0032780	Snai3	100	99.652	Mus_spretus
ENSMUSG00000006587	Snai3	99	46.552	MGP_SPRETEiJ_G0021379	Snai2	99	46.599	Mus_spretus
ENSMUSG00000006587	Snai3	100	61.724	ENSMPUG00000008104	SNAI3	100	63.793	Mustela_putorius_furo
ENSMUSG00000006587	Snai3	100	77.288	ENSNGAG00000023039	Snai3	100	77.288	Nannospalax_galili
ENSMUSG00000006587	Snai3	100	72.260	ENSNLEG00000000595	SNAI3	100	74.315	Nomascus_leucogenys
ENSMUSG00000006587	Snai3	100	65.411	ENSOGAG00000000419	SNAI3	100	68.475	Otolemur_garnettii
ENSMUSG00000006587	Snai3	90	46.642	ENSOARG00000013069	-	99	46.642	Ovis_aries
ENSMUSG00000006587	Snai3	100	71.233	ENSPPAG00000043301	SNAI3	100	73.288	Pan_paniscus
ENSMUSG00000006587	Snai3	99	64.460	ENSPPRG00000008511	SNAI3	99	64.460	Panthera_pardus
ENSMUSG00000006587	Snai3	100	71.233	ENSPTRG00000008460	SNAI3	100	73.288	Pan_troglodytes
ENSMUSG00000006587	Snai3	100	72.603	ENSPANG00000000509	SNAI3	100	72.603	Papio_anubis
ENSMUSG00000006587	Snai3	99	49.837	ENSPKIG00000007872	SNAI3	99	49.837	Paramormyrops_kingsleyae
ENSMUSG00000006587	Snai3	76	58.261	ENSPSIG00000004262	SNAI3	91	58.261	Pelodiscus_sinensis
ENSMUSG00000006587	Snai3	100	71.575	ENSPPYG00000007643	SNAI3	100	73.630	Pongo_abelii
ENSMUSG00000006587	Snai3	100	91.638	ENSRNOG00000013586	Snai3	100	91.638	Rattus_norvegicus
ENSMUSG00000006587	Snai3	100	72.945	ENSRBIG00000025770	SNAI3	100	72.945	Rhinopithecus_bieti
ENSMUSG00000006587	Snai3	100	72.603	ENSRROG00000032757	SNAI3	100	72.603	Rhinopithecus_roxellana
ENSMUSG00000006587	Snai3	99	45.638	ENSSFOG00015018025	SNAI2	99	47.458	Scleropages_formosus
ENSMUSG00000006587	Snai3	99	44.444	ENSSFOG00015016115	snai3	93	46.580	Scleropages_formosus
ENSMUSG00000006587	Snai3	99	63.946	ENSTTRG00000006262	SNAI3	99	63.946	Tursiops_truncatus
ENSMUSG00000006587	Snai3	100	66.781	ENSUAMG00000020030	SNAI3	100	68.493	Ursus_americanus
ENSMUSG00000006587	Snai3	100	65.411	ENSVVUG00000003233	SNAI3	100	67.466	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	10606664.	IDA	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	10606664.	IDA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	16735694.	IDA	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	16735694.	IDA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	10606664.	IDA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	10606664.	IDA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	16735694.	IDA	Component
GO:0005667	transcription factor complex	10606664.	IDA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0006355	regulation of transcription, DNA-templated	10606664.	IDA	Process
GO:0006357	regulation of transcription by RNA polymerase II	16735694.	IDA	Process
GO:0046872	metal ion binding	-	IEA	Function