EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000007029 (Gene tree)
Gene ID: 22321
Gene Symbol: Vars
Alias: Bat-6|Bat6|D17H6S56E|G7a|Vars2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 15336 bases
Position: chr17:35000987-35016322
Accession: 90675
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000084572	tRNA-synt_1g	PF09334.11	1.1e-10	1	1
ENSMUSP00000133994	tRNA-synt_1g	PF09334.11	1.2e-10	1	1
ENSMUSP00000084572	Anticodon_1	PF08264.13	4.9e-32	1	1
ENSMUSP00000133994	Anticodon_1	PF08264.13	5.2e-32	1	1
ENSMUSP00000084572	tRNA-synt_1	PF00133.22	2e-201	1	1
ENSMUSP00000133994	tRNA-synt_1	PF00133.22	2.1e-201	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000173584	-	4048	-	ENSMUSP00000133994	1278 (aa)	-	G3UY93
ENSMUST00000173142	-	388	-	ENSMUSP00000134669	130 (aa)	-	G3UZX1
ENSMUST00000174084	-	826	-	-	- (aa)	-	-
ENSMUST00000173336	-	557	-	-	- (aa)	-	-
ENSMUST00000172656	-	475	-	-	- (aa)	-	-
ENSMUST00000172741	-	347	-	-	- (aa)	-	-
ENSMUST00000172570	-	423	-	ENSMUSP00000134245	125 (aa)	-	G3UYW2
ENSMUST00000173302	-	744	-	-	- (aa)	-	-
ENSMUST00000172637	-	3731	-	-	- (aa)	-	-
ENSMUST00000087315	-	4137	XM_017317395	ENSMUSP00000084572	1263 (aa)	XP_017172884	Q9Z1Q9
ENSMUST00000174260	-	819	-	ENSMUSP00000134313	230 (aa)	-	G3UZ22
ENSMUST00000173911	-	746	-	-	- (aa)	-	-
ENSMUST00000172999	-	806	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000007029's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000007029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000007029	Vars	82	50.096	ENSMUSG00000038838	Vars2	92	52.477

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000007029	Vars	100	92.563	ENSG00000204394	VARS	100	93.038	Homo_sapiens
ENSMUSG00000007029	Vars	98	64.366	ENSAPOG00000020691	vars	99	64.045	Acanthochromis_polyacanthus
ENSMUSG00000007029	Vars	98	64.366	ENSAPOG00000020921	vars	99	64.045	Acanthochromis_polyacanthus
ENSMUSG00000007029	Vars	100	93.043	ENSAMEG00000006417	VARS	100	93.202	Ailuropoda_melanoleuca
ENSMUSG00000007029	Vars	100	65.333	ENSACIG00000013752	vars	100	65.224	Amphilophus_citrinellus
ENSMUSG00000007029	Vars	100	64.926	ENSAOCG00000002447	vars	100	64.016	Amphiprion_ocellaris
ENSMUSG00000007029	Vars	100	64.848	ENSAPEG00000010638	vars	99	64.848	Amphiprion_percula
ENSMUSG00000007029	Vars	100	64.882	ENSATEG00000020219	vars	100	64.381	Anabas_testudineus
ENSMUSG00000007029	Vars	90	71.144	ENSACAG00000029133	-	99	71.144	Anolis_carolinensis
ENSMUSG00000007029	Vars	100	92.405	ENSANAG00000015453	VARS	100	92.880	Aotus_nancymaae
ENSMUSG00000007029	Vars	100	64.806	ENSACLG00000025699	vars	97	64.697	Astatotilapia_calliptera
ENSMUSG00000007029	Vars	94	66.611	ENSAMXG00000017716	vars	95	66.611	Astyanax_mexicanus
ENSMUSG00000007029	Vars	100	92.405	ENSBTAG00000005631	VARS	100	92.880	Bos_taurus
ENSMUSG00000007029	Vars	100	92.168	ENSCJAG00000002604	VARS	100	92.642	Callithrix_jacchus
ENSMUSG00000007029	Vars	100	92.405	ENSCAFG00000000636	VARS	100	92.563	Canis_familiaris
ENSMUSG00000007029	Vars	94	92.568	ENSCAFG00020020790	VARS	96	92.736	Canis_lupus_dingo
ENSMUSG00000007029	Vars	100	92.563	ENSCHIG00000011008	VARS	100	93.038	Capra_hircus
ENSMUSG00000007029	Vars	100	92.880	ENSTSYG00000001567	VARS	100	93.354	Carlito_syrichta
ENSMUSG00000007029	Vars	91	90.917	ENSCAPG00000013736	VARS	99	90.571	Cavia_aperea
ENSMUSG00000007029	Vars	100	91.851	ENSCPOG00000000870	VARS	100	91.535	Cavia_porcellus
ENSMUSG00000007029	Vars	100	93.196	ENSCCAG00000035656	VARS	100	94.527	Cebus_capucinus
ENSMUSG00000007029	Vars	100	93.513	ENSCATG00000022394	VARS	100	93.117	Cercocebus_atys
ENSMUSG00000007029	Vars	93	86.860	ENSCLAG00000009470	VARS	98	85.656	Chinchilla_lanigera
ENSMUSG00000007029	Vars	100	93.750	ENSCSAG00000008784	VARS	100	93.354	Chlorocebus_sabaeus
ENSMUSG00000007029	Vars	77	74.333	ENSCPBG00000007943	VARS	96	74.435	Chrysemys_picta_bellii
ENSMUSG00000007029	Vars	100	93.750	ENSCANG00000033570	VARS	100	93.354	Colobus_angolensis_palliatus
ENSMUSG00000007029	Vars	100	94.937	ENSCGRG00001005686	Vars	100	95.332	Cricetulus_griseus_chok1gshd
ENSMUSG00000007029	Vars	92	89.447	ENSCGRG00000013352	Vars	78	89.866	Cricetulus_griseus_crigri
ENSMUSG00000007029	Vars	100	64.478	ENSCSEG00000019652	vars	100	64.399	Cynoglossus_semilaevis
ENSMUSG00000007029	Vars	100	65.630	ENSCVAG00000022398	vars	100	65.630	Cyprinodon_variegatus
ENSMUSG00000007029	Vars	100	65.214	ENSDARG00000044575	vars	100	65.370	Danio_rerio
ENSMUSG00000007029	Vars	84	92.474	ENSDORG00000016433	Vars	95	92.098	Dipodomys_ordii
ENSMUSG00000007029	Vars	68	85.895	ENSETEG00000003824	VARS	76	85.895	Echinops_telfairi
ENSMUSG00000007029	Vars	57	62.363	ENSEBUG00000004637	vars	100	62.637	Eptatretus_burgeri
ENSMUSG00000007029	Vars	50	71.325	ENSEBUG00000007086	vars	84	70.157	Eptatretus_burgeri
ENSMUSG00000007029	Vars	100	93.275	ENSEASG00005015673	VARS	100	93.750	Equus_asinus_asinus
ENSMUSG00000007029	Vars	100	93.123	ENSECAG00000014620	VARS	100	93.834	Equus_caballus
ENSMUSG00000007029	Vars	78	91.696	ENSEEUG00000004116	VARS	80	91.696	Erinaceus_europaeus
ENSMUSG00000007029	Vars	100	64.379	ENSELUG00000006550	vars	97	64.534	Esox_lucius
ENSMUSG00000007029	Vars	100	92.722	ENSFCAG00000004510	VARS	100	93.038	Felis_catus
ENSMUSG00000007029	Vars	82	92.062	ENSFDAG00000011401	VARS	100	92.062	Fukomys_damarensis
ENSMUSG00000007029	Vars	100	65.708	ENSFHEG00000010672	vars	100	65.785	Fundulus_heteroclitus
ENSMUSG00000007029	Vars	92	66.555	ENSGMOG00000014908	vars	97	66.722	Gadus_morhua
ENSMUSG00000007029	Vars	100	65.888	ENSGAFG00000021630	vars	100	65.888	Gambusia_affinis
ENSMUSG00000007029	Vars	92	66.499	ENSGACG00000009601	vars	98	66.138	Gasterosteus_aculeatus
ENSMUSG00000007029	Vars	50	64.715	ENSGAGG00000006508	-	91	64.557	Gopherus_agassizii
ENSMUSG00000007029	Vars	100	93.592	ENSGGOG00000011364	VARS	100	93.196	Gorilla_gorilla
ENSMUSG00000007029	Vars	100	64.806	ENSHBUG00000017151	vars	97	64.697	Haplochromis_burtoni
ENSMUSG00000007029	Vars	100	91.766	ENSHGLG00000011646	VARS	100	91.766	Heterocephalus_glaber_female
ENSMUSG00000007029	Vars	93	83.624	ENSHGLG00100018062	VARS	100	83.458	Heterocephalus_glaber_male
ENSMUSG00000007029	Vars	99	64.875	ENSHCOG00000012198	vars	99	64.977	Hippocampus_comes
ENSMUSG00000007029	Vars	100	65.370	ENSIPUG00000005218	vars	100	65.525	Ictalurus_punctatus
ENSMUSG00000007029	Vars	100	93.992	ENSSTOG00000013112	VARS	100	93.676	Ictidomys_tridecemlineatus
ENSMUSG00000007029	Vars	100	92.162	ENSJJAG00000019749	-	100	92.162	Jaculus_jaculus
ENSMUSG00000007029	Vars	100	72.922	ENSJJAG00000015343	-	99	74.196	Jaculus_jaculus
ENSMUSG00000007029	Vars	100	65.850	ENSKMAG00000009455	vars	100	65.850	Kryptolebias_marmoratus
ENSMUSG00000007029	Vars	100	64.692	ENSLBEG00000010341	vars	100	64.455	Labrus_bergylta
ENSMUSG00000007029	Vars	94	62.284	ENSLACG00000015232	VARS	99	62.695	Latimeria_chalumnae
ENSMUSG00000007029	Vars	100	66.797	ENSLOCG00000004240	vars	100	66.875	Lepisosteus_oculatus
ENSMUSG00000007029	Vars	100	92.637	ENSLAFG00000023090	VARS	100	92.637	Loxodonta_africana
ENSMUSG00000007029	Vars	100	93.750	ENSMFAG00000001032	VARS	100	93.354	Macaca_fascicularis
ENSMUSG00000007029	Vars	100	93.750	ENSMMUG00000006828	VARS	100	93.354	Macaca_mulatta
ENSMUSG00000007029	Vars	100	93.908	ENSMNEG00000042072	VARS	100	93.513	Macaca_nemestrina
ENSMUSG00000007029	Vars	100	93.671	ENSMLEG00000039307	VARS	100	93.275	Mandrillus_leucophaeus
ENSMUSG00000007029	Vars	100	65.183	ENSMAMG00000003949	vars	100	65.027	Mastacembelus_armatus
ENSMUSG00000007029	Vars	100	64.806	ENSMZEG00005018327	vars	100	64.297	Maylandia_zebra
ENSMUSG00000007029	Vars	100	94.304	ENSMAUG00000006715	Vars	100	94.778	Mesocricetus_auratus
ENSMUSG00000007029	Vars	100	92.484	ENSMICG00000003548	VARS	100	94.030	Microcebus_murinus
ENSMUSG00000007029	Vars	100	93.270	ENSMOCG00000015404	Vars	100	93.270	Microtus_ochrogaster
ENSMUSG00000007029	Vars	100	64.201	ENSMMOG00000015801	vars	100	64.044	Mola_mola
ENSMUSG00000007029	Vars	100	86.155	ENSMODG00000015204	-	100	85.680	Monodelphis_domestica
ENSMUSG00000007029	Vars	99	64.833	ENSMALG00000022532	vars	99	64.724	Monopterus_albus
ENSMUSG00000007029	Vars	100	99.446	MGP_CAROLIEiJ_G0021491	Vars	100	99.446	Mus_caroli
ENSMUSG00000007029	Vars	100	98.812	MGP_PahariEiJ_G0020486	Vars	100	98.812	Mus_pahari
ENSMUSG00000007029	Vars	100	99.921	MGP_SPRETEiJ_G0022396	Vars	100	99.921	Mus_spretus
ENSMUSG00000007029	Vars	100	92.801	ENSMPUG00000010821	VARS	100	92.959	Mustela_putorius_furo
ENSMUSG00000007029	Vars	78	92.814	ENSMLUG00000013126	VARS	100	92.814	Myotis_lucifugus
ENSMUSG00000007029	Vars	100	93.824	ENSNGAG00000012151	Vars	100	93.824	Nannospalax_galili
ENSMUSG00000007029	Vars	100	64.574	ENSNBRG00000020520	vars	100	64.463	Neolamprologus_brichardi
ENSMUSG00000007029	Vars	100	92.326	ENSNLEG00000006351	VARS	100	92.801	Nomascus_leucogenys
ENSMUSG00000007029	Vars	100	82.674	ENSMEUG00000011378	VARS	100	83.070	Notamacropus_eugenii
ENSMUSG00000007029	Vars	100	92.880	ENSOPRG00000003607	VARS	100	93.354	Ochotona_princeps
ENSMUSG00000007029	Vars	100	91.766	ENSODEG00000017681	VARS	100	91.766	Octodon_degus
ENSMUSG00000007029	Vars	100	65.364	ENSONIG00000013064	vars	99	68.059	Oreochromis_niloticus
ENSMUSG00000007029	Vars	77	78.954	ENSOANG00000005400	VARS	98	78.478	Ornithorhynchus_anatinus
ENSMUSG00000007029	Vars	100	90.751	ENSOCUG00000022463	VARS	100	90.830	Oryctolagus_cuniculus
ENSMUSG00000007029	Vars	100	65.405	ENSORLG00000013063	vars	100	65.483	Oryzias_latipes
ENSMUSG00000007029	Vars	100	65.865	ENSORLG00020003504	vars	100	65.943	Oryzias_latipes_hni
ENSMUSG00000007029	Vars	100	65.839	ENSORLG00015009001	vars	100	65.839	Oryzias_latipes_hsok
ENSMUSG00000007029	Vars	100	65.761	ENSOMEG00000015016	vars	100	65.761	Oryzias_melastigma
ENSMUSG00000007029	Vars	100	93.354	ENSOGAG00000007515	VARS	100	93.354	Otolemur_garnettii
ENSMUSG00000007029	Vars	100	92.801	ENSPPAG00000034012	VARS	100	93.275	Pan_paniscus
ENSMUSG00000007029	Vars	100	92.880	ENSPPRG00000014855	VARS	100	93.196	Panthera_pardus
ENSMUSG00000007029	Vars	85	92.937	ENSPTIG00000010462	VARS	95	93.315	Panthera_tigris_altaica
ENSMUSG00000007029	Vars	100	92.880	ENSPTRG00000017985	VARS	100	93.354	Pan_troglodytes
ENSMUSG00000007029	Vars	100	92.114	ENSPANG00000014565	VARS	100	91.719	Papio_anubis
ENSMUSG00000007029	Vars	100	63.988	ENSPKIG00000016304	vars	100	63.988	Paramormyrops_kingsleyae
ENSMUSG00000007029	Vars	100	65.825	ENSPMGG00000023909	vars	100	65.746	Periophthalmus_magnuspinnatus
ENSMUSG00000007029	Vars	100	96.519	ENSPEMG00000006639	Vars	100	96.519	Peromyscus_maniculatus_bairdii
ENSMUSG00000007029	Vars	100	85.918	ENSPCIG00000018553	VARS	100	85.443	Phascolarctos_cinereus
ENSMUSG00000007029	Vars	100	65.966	ENSPFOG00000015690	vars	100	65.966	Poecilia_formosa
ENSMUSG00000007029	Vars	100	66.142	ENSPLAG00000009590	vars	100	66.142	Poecilia_latipinna
ENSMUSG00000007029	Vars	100	65.966	ENSPMEG00000004708	vars	100	65.966	Poecilia_mexicana
ENSMUSG00000007029	Vars	100	64.066	ENSPREG00000013264	vars	100	63.451	Poecilia_reticulata
ENSMUSG00000007029	Vars	100	91.851	ENSPPYG00000016460	VARS	100	91.851	Pongo_abelii
ENSMUSG00000007029	Vars	86	91.741	ENSPCAG00000013565	VARS	86	91.741	Procavia_capensis
ENSMUSG00000007029	Vars	100	92.806	ENSPCOG00000010942	VARS	100	93.518	Propithecus_coquereli
ENSMUSG00000007029	Vars	100	89.715	ENSPVAG00000012403	VARS	100	89.320	Pteropus_vampyrus
ENSMUSG00000007029	Vars	100	64.806	ENSPNYG00000022511	vars	100	64.697	Pundamilia_nyererei
ENSMUSG00000007029	Vars	100	65.244	ENSPNAG00000020962	vars	100	65.089	Pygocentrus_nattereri
ENSMUSG00000007029	Vars	100	97.864	ENSRNOG00000000867	Vars	100	97.864	Rattus_norvegicus
ENSMUSG00000007029	Vars	100	93.671	ENSRBIG00000041669	VARS	100	93.275	Rhinopithecus_bieti
ENSMUSG00000007029	Vars	100	93.671	ENSRROG00000045490	VARS	100	93.275	Rhinopithecus_roxellana
ENSMUSG00000007029	Vars	100	92.247	ENSSBOG00000035402	VARS	100	92.722	Saimiri_boliviensis_boliviensis
ENSMUSG00000007029	Vars	100	81.098	ENSSHAG00000006937	VARS	100	80.941	Sarcophilus_harrisii
ENSMUSG00000007029	Vars	100	65.224	ENSSFOG00015014272	vars	97	72.543	Scleropages_formosus
ENSMUSG00000007029	Vars	100	64.053	ENSSMAG00000009596	vars	99	64.053	Scophthalmus_maximus
ENSMUSG00000007029	Vars	100	64.706	ENSSDUG00000014177	vars	100	64.596	Seriola_dumerili
ENSMUSG00000007029	Vars	100	64.706	ENSSLDG00000025316	vars	100	64.596	Seriola_lalandi_dorsalis
ENSMUSG00000007029	Vars	100	64.848	ENSSPAG00000017068	vars	100	64.926	Stegastes_partitus
ENSMUSG00000007029	Vars	100	92.332	ENSSSCG00000038950	VARS	100	93.043	Sus_scrofa
ENSMUSG00000007029	Vars	82	64.587	ENSTRUG00000012307	vars	98	64.532	Takifugu_rubripes
ENSMUSG00000007029	Vars	100	65.098	ENSTNIG00000008011	vars	100	65.098	Tetraodon_nigroviridis
ENSMUSG00000007029	Vars	53	96.255	ENSTBEG00000004728	-	60	96.255	Tupaia_belangeri
ENSMUSG00000007029	Vars	100	85.127	ENSTTRG00000014128	VARS	100	85.047	Tursiops_truncatus
ENSMUSG00000007029	Vars	100	88.915	ENSUAMG00000010424	VARS	100	89.202	Ursus_americanus
ENSMUSG00000007029	Vars	93	91.746	ENSUMAG00000013486	VARS	98	92.063	Ursus_maritimus
ENSMUSG00000007029	Vars	100	92.569	ENSVVUG00000021323	VARS	100	92.727	Vulpes_vulpes
ENSMUSG00000007029	Vars	96	62.834	ENSXETG00000024076	vars	98	62.834	Xenopus_tropicalis
ENSMUSG00000007029	Vars	100	65.800	ENSXCOG00000019172	vars	100	65.800	Xiphophorus_couchianus
ENSMUSG00000007029	Vars	100	65.732	ENSXMAG00000010927	vars	100	65.732	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002161	aminoacyl-tRNA editing activity	-	IEA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004832	valine-tRNA ligase activity	21873635.	IBA	Function
GO:0004832	valine-tRNA ligase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005739	mitochondrion	14651853.	HDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006412	translation	-	IEA	Process
GO:0006418	tRNA aminoacylation for protein translation	-	IEA	Process
GO:0006438	valyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0016874	ligase activity	-	IEA	Function