EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174746	-	627	-	-	- (aa)	-	-
ENSMUST00000174047	-	581	-	ENSMUSP00000134248	120 (aa)	-	G3UYW5
ENSMUST00000173853	-	465	-	ENSMUSP00000133677	59 (aa)	-	G3UXG2
ENSMUST00000174689	-	507	-	-	- (aa)	-	-
ENSMUST00000020562	-	1634	-	ENSMUSP00000020562	509 (aa)	-	G5E839
ENSMUST00000174659	-	489	-	ENSMUSP00000133667	47 (aa)	-	G3UXF3
ENSMUST00000145912	-	596	-	-	- (aa)	-	-
ENSMUST00000174244	-	1736	-	-	- (aa)	-	-
ENSMUST00000173867	-	2484	-	ENSMUSP00000133523	539 (aa)	-	P80315

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000007739	Cct4	95	64.591	WBGene00000379	cct-4	99	63.011	Caenorhabditis_elegans
ENSMUSG00000007739	Cct4	99	68.598	FBgn0032444	CCT4	99	68.598	Drosophila_melanogaster
ENSMUSG00000007739	Cct4	100	96.660	ENSG00000115484	CCT4	100	96.660	Homo_sapiens
ENSMUSG00000007739	Cct4	96	59.195	YDL143W	CCT4	98	59.195	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002199	zona pellucida receptor complex	21880732.	IDA	Component
GO:0005515	protein binding	23872636.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005832	chaperonin-containing T-complex	21873635.	IBA	Component
GO:0005832	chaperonin-containing T-complex	7828721.7953530.	IDA	Component
GO:0005832	chaperonin-containing T-complex	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	-	ISO	Component
GO:0005929	cilium	-	IEA	Component
GO:0006457	protein folding	-	IEA	Process
GO:0007339	binding of sperm to zona pellucida	21880732.	IDA	Process
GO:0032212	positive regulation of telomere maintenance via telomerase	-	ISO	Process
GO:0042995	cell projection	-	IEA	Component
GO:0044297	cell body	21880732.	IDA	Component
GO:0050821	protein stabilization	-	ISO	Process
GO:0051082	unfolded protein binding	-	IEA	Function
GO:0051973	positive regulation of telomerase activity	-	ISO	Process
GO:0090666	scaRNA localization to Cajal body	-	ISO	Process
GO:1901998	toxin transport	23716698.	IMP	Process
GO:1904851	positive regulation of establishment of protein localization to telomere	-	ISO	Process
GO:1904874	positive regulation of telomerase RNA localization to Cajal body	-	ISO	Process