EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000007880 (Gene tree)
Gene ID: 93760
Gene Symbol: Arid1a
Alias: 1110030E03Rik|BAF250a|Osa1|Smarcf1
Full Name: AT rich interactive domain 1A (SWI-like)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 77762
Position: chr4: 133679008-133756769
Accession: 1935147
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139709	-	1262	-	ENSMUSP00000131950	140 (aa)	-	E9Q495
ENSMUST00000008024	-	6486	XM_006539327	ENSMUSP00000008024	1902 (aa)	XP_006539390	A2BH40
ENSMUST00000168582	-	521	-	-	- (aa)	-	-
ENSMUST00000138473	-	3964	-	-	- (aa)	-	-
ENSMUST00000145664	-	8187	XM_006539325	ENSMUSP00000122354	2287 (aa)	XP_006539388	E9QAQ7
ENSMUST00000105897	-	8175	-	ENSMUSP00000101517	2283 (aa)	-	A2BH40

Gene Model

Click here to download ENSMUSG00000007880's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04714	Thermogenesis	KEGG
mmu05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000007880's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000007880	Arid1a	100	95.331	ENSG00000117713	ARID1A	100	95.902	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	23129809.	IDA	Process
GO:0000790	nuclear chromatin	23129809.	IDA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0001704	formation of primary germ layer	18448678.	IMP	Process
GO:0001843	neural tube closure	23129809.	IMP	Process
GO:0003205	cardiac chamber development	23129809.	IMP	Process
GO:0003408	optic cup formation involved in camera-type eye development	23129809.	IMP	Process
GO:0003677	DNA binding	-	ISO	Function
GO:0005515	protein binding	11988099.16287714.23540691.23698369.24335282.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006325	chromatin organization	11318604.	IPI	Process
GO:0006337	nucleosome disassembly	-	ISO	Process
GO:0006338	chromatin remodeling	18448678.	IMP	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006344	maintenance of chromatin silencing	24335282.	IMP	Process
GO:0007369	gastrulation	18448678.	IMP	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0007566	embryo implantation	18448678.	IMP	Process
GO:0016514	SWI/SNF complex	11318604.16287714.	IDA	Component
GO:0016514	SWI/SNF complex	-	ISO	Component
GO:0016922	nuclear receptor binding	-	ISO	Function
GO:0019827	stem cell population maintenance	18448678.	IMP	Process
GO:0030520	intracellular estrogen receptor signaling pathway	-	ISO	Process
GO:0030521	androgen receptor signaling pathway	-	ISO	Process
GO:0030900	forebrain development	23129809.	IMP	Process
GO:0031491	nucleosome binding	23129809.	IDA	Function
GO:0042921	glucocorticoid receptor signaling pathway	-	ISO	Process
GO:0043044	ATP-dependent chromatin remodeling	23129809.	IDA	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0055007	cardiac muscle cell differentiation	24335282.	IMP	Process
GO:0060674	placenta blood vessel development	23129809.	IMP	Process
GO:0071564	npBAF complex	17640523.	IDA	Component
GO:0071565	nBAF complex	17640523.	IDA	Component
GO:1901998	toxin transport	23716698.	IMP	Process