EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000008348 (Gene tree)
Gene ID: 22190
Gene Symbol: Ubc
Alias: 2700054O04Rik
Full Name: ubiquitin C
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 4238
Position: chr5: 125385965-125390202
Accession: 98889
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156249	-	2581	-	ENSMUSP00000115578	734 (aa)	-	P0CG50
ENSMUST00000136312	-	2618	-	ENSMUSP00000114180	734 (aa)	-	P0CG50
ENSMUST00000108707	-	693	-	ENSMUSP00000104347	201 (aa)	-	E9Q5F6

Gene Model

Click here to download ENSMUSG00000008348's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03320	PPAR signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000008348's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000008348	Ubc	100	98.684	WBGene00006727	ubq-1	99	98.684	Caenorhabditis_elegans
ENSMUSG00000008348	Ubc	100	100.000	ENSG00000150991	UBC	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002020	protease binding	-	ISO	Function
GO:0005515	protein binding	22079573.22974638.27822540.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0019941	modification-dependent protein catabolic process	21873635.	IBA	Process
GO:0031386	protein tag	21873635.	IBA	Function
GO:0031625	ubiquitin protein ligase binding	21873635.	IBA	Function
GO:0043209	myelin sheath	17634366.	HDA	Component