EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000008373 (Gene tree)
Gene ID: 68988
Gene Symbol: Prpf31
Alias: 1500019O16Rik|2810404O06Rik|PRP31|RP11
Full Name: pre-mRNA processing factor 31
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 12502 bases
Position: chr7:3629985-3642486
Accession: 1916238
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000008517	Prp31_C	PF09785.9	2.3e-45	1	1
ENSMUSP00000104276	Prp31_C	PF09785.9	2.3e-45	1	1
ENSMUSP00000136031	Prp31_C	PF09785.9	2.3e-45	1	1
ENSMUSP00000008517	Nop	PF01798.18	1.3e-83	1	1
ENSMUSP00000104276	Nop	PF01798.18	1.1e-79	1	1
ENSMUSP00000136031	Nop	PF01798.18	1.1e-79	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000134047	-	660	-	-	- (aa)	-	-
ENSMUST00000125782	-	2731	-	ENSMUSP00000146017	65 (aa)	-	Q8CCF0
ENSMUST00000108636	-	1798	-	ENSMUSP00000104276	493 (aa)	-	Q8CCF0
ENSMUST00000008517	-	3144	-	ENSMUSP00000008517	499 (aa)	-	Q8CCF0
ENSMUST00000179769	-	3125	-	ENSMUSP00000136031	493 (aa)	-	Q8CCF0
ENSMUST00000143231	-	827	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000008373's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000008373's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000008373	Prpf31	100	98.998	ENSG00000105618	PRPF31	100	98.998	Homo_sapiens
ENSMUSG00000008373	Prpf31	93	85.529	ENSAPOG00000020310	prpf31	97	85.529	Acanthochromis_polyacanthus
ENSMUSG00000008373	Prpf31	100	98.998	ENSAMEG00000004502	PRPF31	100	98.998	Ailuropoda_melanoleuca
ENSMUSG00000008373	Prpf31	99	82.970	ENSACIG00000006591	prpf31	91	85.961	Amphilophus_citrinellus
ENSMUSG00000008373	Prpf31	99	83.570	ENSAOCG00000021333	prpf31	93	85.435	Amphiprion_ocellaris
ENSMUSG00000008373	Prpf31	99	83.570	ENSAPEG00000008035	prpf31	93	85.435	Amphiprion_percula
ENSMUSG00000008373	Prpf31	99	82.772	ENSATEG00000022705	prpf31	91	85.529	Anabas_testudineus
ENSMUSG00000008373	Prpf31	96	94.572	ENSACAG00000016061	PRPF31	94	95.319	Anolis_carolinensis
ENSMUSG00000008373	Prpf31	84	99.284	ENSANAG00000020822	PRPF31	100	99.284	Aotus_nancymaae
ENSMUSG00000008373	Prpf31	99	83.333	ENSACLG00000021238	prpf31	91	85.745	Astatotilapia_calliptera
ENSMUSG00000008373	Prpf31	99	82.961	ENSAMXG00000012329	prpf31	93	84.017	Astyanax_mexicanus
ENSMUSG00000008373	Prpf31	100	98.998	ENSBTAG00000007757	PRPF31	100	98.998	Bos_taurus
ENSMUSG00000008373	Prpf31	94	46.473	WBGene00022458	prp-31	91	47.174	Caenorhabditis_elegans
ENSMUSG00000008373	Prpf31	100	98.998	ENSCJAG00000018525	PRPF31	100	98.998	Callithrix_jacchus
ENSMUSG00000008373	Prpf31	100	99.198	ENSCAFG00000002700	PRPF31	100	99.198	Canis_familiaris
ENSMUSG00000008373	Prpf31	100	99.198	ENSCAFG00020018376	PRPF31	100	99.198	Canis_lupus_dingo
ENSMUSG00000008373	Prpf31	94	95.106	ENSCHIG00000021020	PRPF31	94	95.106	Capra_hircus
ENSMUSG00000008373	Prpf31	100	98.998	ENSTSYG00000013569	PRPF31	100	98.998	Carlito_syrichta
ENSMUSG00000008373	Prpf31	100	98.597	ENSCAPG00000013797	PRPF31	100	98.597	Cavia_aperea
ENSMUSG00000008373	Prpf31	100	98.597	ENSCPOG00000011507	PRPF31	100	98.597	Cavia_porcellus
ENSMUSG00000008373	Prpf31	100	98.998	ENSCCAG00000020552	-	100	98.998	Cebus_capucinus
ENSMUSG00000008373	Prpf31	92	88.017	ENSCCAG00000022236	-	98	88.017	Cebus_capucinus
ENSMUSG00000008373	Prpf31	100	98.798	ENSCATG00000006020	PRPF31	100	98.798	Cercocebus_atys
ENSMUSG00000008373	Prpf31	100	97.996	ENSCLAG00000001700	PRPF31	100	97.996	Chinchilla_lanigera
ENSMUSG00000008373	Prpf31	100	98.998	ENSCSAG00000001903	PRPF31	100	98.998	Chlorocebus_sabaeus
ENSMUSG00000008373	Prpf31	89	95.034	ENSCPBG00000011670	PRPF31	92	95.034	Chrysemys_picta_bellii
ENSMUSG00000008373	Prpf31	98	62.970	ENSCSAVG00000010862	-	87	64.026	Ciona_savignyi
ENSMUSG00000008373	Prpf31	100	98.798	ENSCANG00000029967	PRPF31	100	98.798	Colobus_angolensis_palliatus
ENSMUSG00000008373	Prpf31	100	99.599	ENSCGRG00001004873	Prpf31	100	99.599	Cricetulus_griseus_chok1gshd
ENSMUSG00000008373	Prpf31	94	99.143	ENSCGRG00000012910	Prpf31	100	99.143	Cricetulus_griseus_crigri
ENSMUSG00000008373	Prpf31	98	82.200	ENSCSEG00000018961	prpf31	91	84.816	Cynoglossus_semilaevis
ENSMUSG00000008373	Prpf31	99	84.787	ENSCVAG00000000226	prpf31	93	85.714	Cyprinodon_variegatus
ENSMUSG00000008373	Prpf31	99	82.411	ENSDARG00000095904	prpf31	91	85.560	Danio_rerio
ENSMUSG00000008373	Prpf31	100	98.798	ENSDNOG00000032884	PRPF31	99	98.798	Dasypus_novemcinctus
ENSMUSG00000008373	Prpf31	100	98.798	ENSDORG00000008022	Prpf31	100	98.798	Dipodomys_ordii
ENSMUSG00000008373	Prpf31	98	60.040	FBgn0036487	Prp31	89	63.029	Drosophila_melanogaster
ENSMUSG00000008373	Prpf31	83	98.291	ENSETEG00000017891	PRPF31	82	98.291	Echinops_telfairi
ENSMUSG00000008373	Prpf31	77	55.729	ENSEBUG00000004819	prpf31	90	55.820	Eptatretus_burgeri
ENSMUSG00000008373	Prpf31	100	99.198	ENSEASG00005021593	PRPF31	100	99.198	Equus_asinus_asinus
ENSMUSG00000008373	Prpf31	100	99.198	ENSECAG00000020667	PRPF31	100	99.198	Equus_caballus
ENSMUSG00000008373	Prpf31	77	90.625	ENSEEUG00000006128	PRPF31	100	90.625	Erinaceus_europaeus
ENSMUSG00000008373	Prpf31	99	82.072	ENSELUG00000014820	prpf31	94	82.839	Esox_lucius
ENSMUSG00000008373	Prpf31	100	99.198	ENSFCAG00000014037	PRPF31	100	99.198	Felis_catus
ENSMUSG00000008373	Prpf31	100	98.397	ENSFDAG00000011961	PRPF31	100	98.397	Fukomys_damarensis
ENSMUSG00000008373	Prpf31	82	89.944	ENSFHEG00000003642	prpf31	66	88.268	Fundulus_heteroclitus
ENSMUSG00000008373	Prpf31	99	81.584	ENSGMOG00000005345	prpf31	89	83.983	Gadus_morhua
ENSMUSG00000008373	Prpf31	99	84.381	ENSGAFG00000013128	prpf31	94	85.498	Gambusia_affinis
ENSMUSG00000008373	Prpf31	99	81.386	ENSGACG00000011464	prpf31	91	84.233	Gasterosteus_aculeatus
ENSMUSG00000008373	Prpf31	96	94.561	ENSGAGG00000000670	PRPF31	94	95.532	Gopherus_agassizii
ENSMUSG00000008373	Prpf31	100	98.998	ENSGGOG00000016516	PRPF31	100	98.998	Gorilla_gorilla
ENSMUSG00000008373	Prpf31	99	83.135	ENSHBUG00000005311	prpf31	91	85.529	Haplochromis_burtoni
ENSMUSG00000008373	Prpf31	100	97.796	ENSHGLG00000010504	PRPF31	100	97.796	Heterocephalus_glaber_female
ENSMUSG00000008373	Prpf31	100	86.815	ENSHGLG00100005911	PRPF31	100	86.815	Heterocephalus_glaber_male
ENSMUSG00000008373	Prpf31	99	81.386	ENSHCOG00000020890	prpf31	91	84.233	Hippocampus_comes
ENSMUSG00000008373	Prpf31	99	81.584	ENSIPUG00000000171	prpf31	91	84.233	Ictalurus_punctatus
ENSMUSG00000008373	Prpf31	100	98.998	ENSSTOG00000001287	PRPF31	100	98.998	Ictidomys_tridecemlineatus
ENSMUSG00000008373	Prpf31	100	99.198	ENSJJAG00000015594	Prpf31	100	99.198	Jaculus_jaculus
ENSMUSG00000008373	Prpf31	99	82.178	ENSKMAG00000004967	prpf31	91	85.097	Kryptolebias_marmoratus
ENSMUSG00000008373	Prpf31	99	82.574	ENSLBEG00000017225	prpf31	91	85.097	Labrus_bergylta
ENSMUSG00000008373	Prpf31	93	81.169	ENSLACG00000009449	PRPF31	93	81.169	Latimeria_chalumnae
ENSMUSG00000008373	Prpf31	99	76.200	ENSLOCG00000000007	prpf31	90	79.787	Lepisosteus_oculatus
ENSMUSG00000008373	Prpf31	100	98.998	ENSLAFG00000004559	PRPF31	100	98.998	Loxodonta_africana
ENSMUSG00000008373	Prpf31	100	98.998	ENSMFAG00000001108	PRPF31	100	98.998	Macaca_fascicularis
ENSMUSG00000008373	Prpf31	100	98.998	ENSMMUG00000022297	PRPF31	100	98.998	Macaca_mulatta
ENSMUSG00000008373	Prpf31	100	98.998	ENSMNEG00000035943	PRPF31	100	98.998	Macaca_nemestrina
ENSMUSG00000008373	Prpf31	100	98.998	ENSMLEG00000031953	PRPF31	100	98.998	Mandrillus_leucophaeus
ENSMUSG00000008373	Prpf31	99	82.970	ENSMAMG00000019433	prpf31	91	85.498	Mastacembelus_armatus
ENSMUSG00000008373	Prpf31	99	83.333	ENSMZEG00005016314	prpf31	91	85.745	Maylandia_zebra
ENSMUSG00000008373	Prpf31	100	99.399	ENSMAUG00000011581	Prpf31	100	99.399	Mesocricetus_auratus
ENSMUSG00000008373	Prpf31	100	98.998	ENSMICG00000002355	PRPF31	100	98.998	Microcebus_murinus
ENSMUSG00000008373	Prpf31	100	99.599	ENSMOCG00000002128	Prpf31	100	99.599	Microtus_ochrogaster
ENSMUSG00000008373	Prpf31	99	80.990	ENSMMOG00000016451	prpf31	91	84.449	Mola_mola
ENSMUSG00000008373	Prpf31	100	96.794	ENSMODG00000004098	PRPF31	100	96.794	Monodelphis_domestica
ENSMUSG00000008373	Prpf31	99	82.389	ENSMALG00000009251	prpf31	93	83.731	Monopterus_albus
ENSMUSG00000008373	Prpf31	100	99.599	MGP_CAROLIEiJ_G0029094	Prpf31	100	99.599	Mus_caroli
ENSMUSG00000008373	Prpf31	100	99.599	MGP_PahariEiJ_G0020963	Prpf31	100	99.599	Mus_pahari
ENSMUSG00000008373	Prpf31	99	99.595	MGP_SPRETEiJ_G0030147	Prpf31	99	99.595	Mus_spretus
ENSMUSG00000008373	Prpf31	100	99.198	ENSMPUG00000010341	PRPF31	100	99.198	Mustela_putorius_furo
ENSMUSG00000008373	Prpf31	99	96.386	ENSMLUG00000016862	PRPF31	94	96.588	Myotis_lucifugus
ENSMUSG00000008373	Prpf31	100	98.998	ENSNGAG00000024131	Prpf31	100	98.998	Nannospalax_galili
ENSMUSG00000008373	Prpf31	99	83.135	ENSNBRG00000002354	prpf31	91	85.529	Neolamprologus_brichardi
ENSMUSG00000008373	Prpf31	85	91.962	ENSNLEG00000006261	-	91	92.381	Nomascus_leucogenys
ENSMUSG00000008373	Prpf31	79	88.636	ENSMEUG00000002943	PRPF31	93	88.636	Notamacropus_eugenii
ENSMUSG00000008373	Prpf31	58	98.616	ENSOPRG00000000055	PRPF31	100	98.616	Ochotona_princeps
ENSMUSG00000008373	Prpf31	100	98.397	ENSODEG00000000855	PRPF31	100	98.397	Octodon_degus
ENSMUSG00000008373	Prpf31	99	83.333	ENSONIG00000006574	prpf31	92	84.894	Oreochromis_niloticus
ENSMUSG00000008373	Prpf31	81	77.193	ENSOANG00000009386	-	93	78.005	Ornithorhynchus_anatinus
ENSMUSG00000008373	Prpf31	94	89.809	ENSOCUG00000002027	PRPF31	94	89.809	Oryctolagus_cuniculus
ENSMUSG00000008373	Prpf31	99	84.008	ENSORLG00000011189	prpf31	93	85.281	Oryzias_latipes
ENSMUSG00000008373	Prpf31	99	83.773	ENSORLG00020007965	prpf31	93	85.217	Oryzias_latipes_hni
ENSMUSG00000008373	Prpf31	99	81.657	ENSORLG00015013676	prpf31	91	85.281	Oryzias_latipes_hsok
ENSMUSG00000008373	Prpf31	99	81.460	ENSOMEG00000010384	prpf31	91	84.881	Oryzias_melastigma
ENSMUSG00000008373	Prpf31	62	99.674	ENSOGAG00000006936	PRPF31	100	99.674	Otolemur_garnettii
ENSMUSG00000008373	Prpf31	94	86.207	ENSOARG00000003033	PRPF31	95	86.207	Ovis_aries
ENSMUSG00000008373	Prpf31	100	98.998	ENSPPAG00000032209	PRPF31	100	98.998	Pan_paniscus
ENSMUSG00000008373	Prpf31	100	99.198	ENSPPRG00000011686	PRPF31	100	99.198	Panthera_pardus
ENSMUSG00000008373	Prpf31	100	99.198	ENSPTIG00000008467	PRPF31	100	99.198	Panthera_tigris_altaica
ENSMUSG00000008373	Prpf31	100	98.998	ENSPTRG00000045480	-	100	98.998	Pan_troglodytes
ENSMUSG00000008373	Prpf31	100	98.998	ENSPTRG00000011443	PRPF31	100	98.998	Pan_troglodytes
ENSMUSG00000008373	Prpf31	100	98.998	ENSPANG00000025402	PRPF31	100	98.998	Papio_anubis
ENSMUSG00000008373	Prpf31	99	81.996	ENSPKIG00000011812	prpf31	92	85.470	Paramormyrops_kingsleyae
ENSMUSG00000008373	Prpf31	65	95.046	ENSPSIG00000003405	PRPF31	98	95.046	Pelodiscus_sinensis
ENSMUSG00000008373	Prpf31	100	94.389	ENSPEMG00000011678	Prpf31	100	94.389	Peromyscus_maniculatus_bairdii
ENSMUSG00000008373	Prpf31	100	96.794	ENSPCIG00000014820	PRPF31	100	96.794	Phascolarctos_cinereus
ENSMUSG00000008373	Prpf31	99	82.970	ENSPFOG00000008822	prpf31	91	85.745	Poecilia_formosa
ENSMUSG00000008373	Prpf31	99	82.376	ENSPLAG00000013314	prpf31	91	85.097	Poecilia_latipinna
ENSMUSG00000008373	Prpf31	99	84.787	ENSPMEG00000017707	prpf31	93	85.931	Poecilia_mexicana
ENSMUSG00000008373	Prpf31	99	82.376	ENSPREG00000007764	prpf31	91	85.097	Poecilia_reticulata
ENSMUSG00000008373	Prpf31	100	98.998	ENSPPYG00000010371	PRPF31	100	98.998	Pongo_abelii
ENSMUSG00000008373	Prpf31	100	74.749	ENSPCAG00000011872	PRPF31	100	74.749	Procavia_capensis
ENSMUSG00000008373	Prpf31	100	98.998	ENSPCOG00000020393	PRPF31	100	98.998	Propithecus_coquereli
ENSMUSG00000008373	Prpf31	100	98.397	ENSPVAG00000015562	PRPF31	100	98.397	Pteropus_vampyrus
ENSMUSG00000008373	Prpf31	99	82.937	ENSPNYG00000002232	prpf31	91	85.313	Pundamilia_nyererei
ENSMUSG00000008373	Prpf31	99	81.496	ENSPNAG00000003485	prpf31	91	84.764	Pygocentrus_nattereri
ENSMUSG00000008373	Prpf31	100	99.599	ENSRNOG00000061039	Prpf31	100	99.599	Rattus_norvegicus
ENSMUSG00000008373	Prpf31	100	98.798	ENSRBIG00000034963	PRPF31	100	98.798	Rhinopithecus_bieti
ENSMUSG00000008373	Prpf31	100	98.798	ENSRROG00000038740	PRPF31	100	98.798	Rhinopithecus_roxellana
ENSMUSG00000008373	Prpf31	66	31.356	YGR091W	-	71	31.356	Saccharomyces_cerevisiae
ENSMUSG00000008373	Prpf31	100	98.998	ENSSBOG00000028915	PRPF31	100	98.998	Saimiri_boliviensis_boliviensis
ENSMUSG00000008373	Prpf31	100	96.794	ENSSHAG00000009065	PRPF31	100	96.794	Sarcophilus_harrisii
ENSMUSG00000008373	Prpf31	99	82.387	ENSSFOG00015000288	prpf31	92	85.470	Scleropages_formosus
ENSMUSG00000008373	Prpf31	99	82.178	ENSSMAG00000013211	prpf31	91	84.881	Scophthalmus_maximus
ENSMUSG00000008373	Prpf31	99	83.838	ENSSDUG00000008360	prpf31	93	84.881	Seriola_dumerili
ENSMUSG00000008373	Prpf31	99	74.549	ENSSLDG00000002851	prpf31	91	77.024	Seriola_lalandi_dorsalis
ENSMUSG00000008373	Prpf31	96	93.737	ENSSPUG00000008622	PRPF31	94	94.468	Sphenodon_punctatus
ENSMUSG00000008373	Prpf31	99	78.571	ENSSPAG00000022547	prpf31	92	81.020	Stegastes_partitus
ENSMUSG00000008373	Prpf31	100	98.798	ENSSSCG00000003263	PRPF31	100	98.798	Sus_scrofa
ENSMUSG00000008373	Prpf31	99	80.952	ENSTRUG00000015769	prpf31	91	84.199	Takifugu_rubripes
ENSMUSG00000008373	Prpf31	99	81.065	ENSTNIG00000008083	prpf31	91	84.086	Tetraodon_nigroviridis
ENSMUSG00000008373	Prpf31	94	85.775	ENSTTRG00000006566	PRPF31	94	85.775	Tursiops_truncatus
ENSMUSG00000008373	Prpf31	100	99.198	ENSUAMG00000005241	PRPF31	100	99.198	Ursus_americanus
ENSMUSG00000008373	Prpf31	100	99.198	ENSUMAG00000011212	PRPF31	100	99.198	Ursus_maritimus
ENSMUSG00000008373	Prpf31	100	99.198	ENSVVUG00000008257	PRPF31	100	99.198	Vulpes_vulpes
ENSMUSG00000008373	Prpf31	95	91.350	ENSXETG00000010916	prpf31	94	92.505	Xenopus_tropicalis
ENSMUSG00000008373	Prpf31	99	84.178	ENSXCOG00000019456	prpf31	94	85.065	Xiphophorus_couchianus
ENSMUSG00000008373	Prpf31	99	84.381	ENSXMAG00000012272	prpf31	94	85.281	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	11867543.	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	11867543.	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	-	ISO	Component
GO:0005690	U4atac snRNP	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	11867543.	ISO	Component
GO:0016607	nuclear speck	11867543.	ISO	Component
GO:0030621	U4 snRNA binding	-	ISO	Function
GO:0030622	U4atac snRNA binding	-	ISO	Function
GO:0043021	ribonucleoprotein complex binding	11867543.	ISO	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	11867543.	ISO	Component
GO:0070990	snRNP binding	-	ISO	Function
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071166	ribonucleoprotein complex localization	-	ISO	Process
GO:0071339	MLL1 complex	-	ISO	Component