EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000008658 (Gene tree)
Gene ID: 268859
Gene Symbol: Rbfox1
Alias: A2bp|A2bp1|FOX1|HRNBP1
Full Name: RNA binding protein%2C fox-1 homolog (C. elegans) 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 1526172 bases
Position: chr16:5885355-7411526
Accession: 1926224
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000155799	Fox-1_C	PF12414.8	2.1e-42	1	1
ENSMUSP00000049970	Fox-1_C	PF12414.8	2.5e-42	1	1
ENSMUSP00000111507	Fox-1_C	PF12414.8	2.5e-42	1	1
ENSMUSP00000155321	Fox-1_C	PF12414.8	2.5e-42	1	1
ENSMUSP00000155364	Fox-1_C	PF12414.8	2.9e-40	1	1
ENSMUSP00000154916	Fox-1_C	PF12414.8	5.9e-36	1	1
ENSMUSP00000155069	Fox-1_C	PF12414.8	4e-14	1	1
ENSMUSP00000155069	RRM_1	PF00076.22	4.6e-18	1	1
ENSMUSP00000155799	RRM_1	PF00076.22	6.1e-18	1	1
ENSMUSP00000155364	RRM_1	PF00076.22	7e-18	1	1
ENSMUSP00000049970	RRM_1	PF00076.22	7.2e-18	1	1
ENSMUSP00000111507	RRM_1	PF00076.22	7.2e-18	1	1
ENSMUSP00000155321	RRM_1	PF00076.22	7.3e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000056416	-	3061	XM_006522155	ENSMUSP00000049970	396 (aa)	XP_006522218	Q9JJ43
ENSMUST00000230336	-	629	-	-	- (aa)	-	-
ENSMUST00000231031	-	558	-	ENSMUSP00000154916	133 (aa)	-	A0A2R8VHB5
ENSMUST00000115841	-	1191	-	ENSMUSP00000111507	396 (aa)	-	Q9JJ43
ENSMUST00000231088	-	1295	XM_006522192	ENSMUSP00000155799	358 (aa)	XP_006522255	A0A2R8VI79
ENSMUST00000231194	-	1451	XM_006522184	ENSMUSP00000155321	396 (aa)	XP_006522247	A0A2R8VK79
ENSMUST00000229741	-	1407	XM_006522173	ENSMUSP00000155364	417 (aa)	XP_006522236	Q9JJ43
ENSMUST00000230658	-	1504	-	ENSMUSP00000155069	289 (aa)	-	A0A2R8W6K5

Gene Model

Click here to download ENSMUSG00000008658's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000008658's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000008658	Rbfox1	99	64.626	ENSMUSG00000033565	Rbfox2	100	62.287
ENSMUSG00000008658	Rbfox1	96	66.189	ENSMUSG00000025576	Rbfox3	100	71.930

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000008658	Rbfox1	100	99.248	ENSG00000078328	RBFOX1	100	98.237	Homo_sapiens
ENSMUSG00000008658	Rbfox1	99	88.636	ENSAPOG00000003197	rbfox1	100	76.145	Acanthochromis_polyacanthus
ENSMUSG00000008658	Rbfox1	77	93.722	ENSAMEG00000008605	RBFOX1	100	94.000	Ailuropoda_melanoleuca
ENSMUSG00000008658	Rbfox1	69	75.124	ENSACIG00000005478	rbfox1	68	66.308	Amphilophus_citrinellus
ENSMUSG00000008658	Rbfox1	95	69.048	ENSAOCG00000008283	rbfox1	98	69.872	Amphiprion_ocellaris
ENSMUSG00000008658	Rbfox1	99	81.061	ENSAPEG00000010636	rbfox1	100	71.053	Amphiprion_percula
ENSMUSG00000008658	Rbfox1	95	67.905	ENSATEG00000007513	rbfox1	97	68.489	Anabas_testudineus
ENSMUSG00000008658	Rbfox1	98	93.573	ENSAPLG00000013263	RBFOX1	98	93.350	Anas_platyrhynchos
ENSMUSG00000008658	Rbfox1	99	90.909	ENSACAG00000004013	RBFOX1	100	86.466	Anolis_carolinensis
ENSMUSG00000008658	Rbfox1	100	98.496	ENSANAG00000029527	RBFOX1	98	97.194	Aotus_nancymaae
ENSMUSG00000008658	Rbfox1	77	87.387	ENSAMXG00000002431	rbfox1	65	87.500	Astyanax_mexicanus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSBTAG00000007210	RBFOX1	98	96.939	Bos_taurus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSCJAG00000017351	RBFOX1	100	97.129	Callithrix_jacchus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSCAFG00000019082	RBFOX1	100	97.608	Canis_familiaris
ENSMUSG00000008658	Rbfox1	93	97.026	ENSCAFG00020024881	RBFOX1	83	96.959	Canis_lupus_dingo
ENSMUSG00000008658	Rbfox1	100	98.496	ENSCHIG00000023549	RBFOX1	98	96.939	Capra_hircus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSTSYG00000005334	RBFOX1	100	97.429	Carlito_syrichta
ENSMUSG00000008658	Rbfox1	100	99.248	ENSCAPG00000017669	RBFOX1	100	97.165	Cavia_aperea
ENSMUSG00000008658	Rbfox1	100	99.248	ENSCPOG00000011314	RBFOX1	100	97.229	Cavia_porcellus
ENSMUSG00000008658	Rbfox1	100	98.496	ENSCCAG00000023031	RBFOX1	100	97.129	Cebus_capucinus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSCATG00000033816	RBFOX1	100	97.608	Cercocebus_atys
ENSMUSG00000008658	Rbfox1	100	99.248	ENSCLAG00000012761	RBFOX1	100	97.229	Chinchilla_lanigera
ENSMUSG00000008658	Rbfox1	99	96.503	ENSCSAG00000008739	RBFOX1	89	95.224	Chlorocebus_sabaeus
ENSMUSG00000008658	Rbfox1	100	75.598	ENSCHOG00000012843	RBFOX1	100	75.598	Choloepus_hoffmanni
ENSMUSG00000008658	Rbfox1	99	95.455	ENSCPBG00000026626	RBFOX1	98	93.112	Chrysemys_picta_bellii
ENSMUSG00000008658	Rbfox1	100	99.248	ENSCANG00000033125	RBFOX1	100	97.608	Colobus_angolensis_palliatus
ENSMUSG00000008658	Rbfox1	100	100.000	ENSCGRG00001013729	Rbfox1	100	99.520	Cricetulus_griseus_chok1gshd
ENSMUSG00000008658	Rbfox1	100	100.000	ENSCGRG00000003272	Rbfox1	100	99.520	Cricetulus_griseus_crigri
ENSMUSG00000008658	Rbfox1	99	80.303	ENSCSEG00000008840	rbfox1	100	72.823	Cynoglossus_semilaevis
ENSMUSG00000008658	Rbfox1	99	86.364	ENSDARG00000014746	rbfox1	100	85.854	Danio_rerio
ENSMUSG00000008658	Rbfox1	98	97.423	ENSDNOG00000043612	RBFOX1	94	97.179	Dasypus_novemcinctus
ENSMUSG00000008658	Rbfox1	99	94.430	ENSDORG00000010024	Rbfox1	100	93.052	Dipodomys_ordii
ENSMUSG00000008658	Rbfox1	100	98.496	ENSETEG00000003771	RBFOX1	100	78.417	Echinops_telfairi
ENSMUSG00000008658	Rbfox1	100	100.000	ENSEASG00005011599	RBFOX1	98	97.704	Equus_asinus_asinus
ENSMUSG00000008658	Rbfox1	100	100.000	ENSECAG00000012667	RBFOX1	98	97.284	Equus_caballus
ENSMUSG00000008658	Rbfox1	96	72.656	ENSELUG00000013096	rbfox1	100	52.393	Esox_lucius
ENSMUSG00000008658	Rbfox1	100	97.586	ENSFCAG00000025322	RBFOX1	90	97.187	Felis_catus
ENSMUSG00000008658	Rbfox1	98	90.559	ENSFALG00000004027	RBFOX1	100	91.291	Ficedula_albicollis
ENSMUSG00000008658	Rbfox1	100	99.248	ENSFDAG00000007388	RBFOX1	100	97.733	Fukomys_damarensis
ENSMUSG00000008658	Rbfox1	99	93.939	ENSGALG00000034325	RBFOX1	100	92.344	Gallus_gallus
ENSMUSG00000008658	Rbfox1	99	95.455	ENSGAGG00000023681	RBFOX1	100	93.899	Gopherus_agassizii
ENSMUSG00000008658	Rbfox1	100	99.248	ENSGGOG00000016871	-	100	97.608	Gorilla_gorilla
ENSMUSG00000008658	Rbfox1	100	99.248	ENSHGLG00000016944	RBFOX1	100	97.481	Heterocephalus_glaber_female
ENSMUSG00000008658	Rbfox1	100	99.248	ENSHGLG00100003272	RBFOX1	100	97.481	Heterocephalus_glaber_male
ENSMUSG00000008658	Rbfox1	91	70.803	ENSHCOG00000016419	rbfox1	91	72.644	Hippocampus_comes
ENSMUSG00000008658	Rbfox1	99	87.121	ENSIPUG00000015215	rbfox1	100	84.358	Ictalurus_punctatus
ENSMUSG00000008658	Rbfox1	100	100.000	ENSSTOG00000000322	RBFOX1	100	97.481	Ictidomys_tridecemlineatus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSJJAG00000002575	Rbfox1	100	94.484	Jaculus_jaculus
ENSMUSG00000008658	Rbfox1	99	80.303	ENSLBEG00000014659	rbfox1	99	72.705	Labrus_bergylta
ENSMUSG00000008658	Rbfox1	99	87.879	ENSLOCG00000006675	rbfox1	99	86.005	Lepisosteus_oculatus
ENSMUSG00000008658	Rbfox1	100	100.000	ENSLAFG00000011480	RBFOX1	100	98.701	Loxodonta_africana
ENSMUSG00000008658	Rbfox1	100	99.248	ENSMFAG00000036447	RBFOX1	100	97.368	Macaca_fascicularis
ENSMUSG00000008658	Rbfox1	100	99.248	ENSMMUG00000003458	RBFOX1	100	97.368	Macaca_mulatta
ENSMUSG00000008658	Rbfox1	100	99.248	ENSMNEG00000032034	RBFOX1	100	97.368	Macaca_nemestrina
ENSMUSG00000008658	Rbfox1	100	99.248	ENSMLEG00000015382	RBFOX1	100	97.608	Mandrillus_leucophaeus
ENSMUSG00000008658	Rbfox1	98	83.206	ENSMAMG00000003142	rbfox1	100	76.738	Mastacembelus_armatus
ENSMUSG00000008658	Rbfox1	97	87.900	ENSMGAG00000008606	RBFOX1	97	87.900	Meleagris_gallopavo
ENSMUSG00000008658	Rbfox1	96	63.768	ENSMAUG00000020570	Rbfox1	99	57.722	Mesocricetus_auratus
ENSMUSG00000008658	Rbfox1	100	97.241	ENSMICG00000034286	RBFOX1	100	88.586	Microcebus_murinus
ENSMUSG00000008658	Rbfox1	100	100.000	ENSMOCG00000020932	Rbfox1	100	99.520	Microtus_ochrogaster
ENSMUSG00000008658	Rbfox1	93	73.529	ENSMMOG00000009716	rbfox1	86	72.586	Mola_mola
ENSMUSG00000008658	Rbfox1	93	96.296	ENSMODG00000005826	RBFOX1	90	94.357	Monodelphis_domestica
ENSMUSG00000008658	Rbfox1	99	86.364	ENSMALG00000003337	rbfox1	100	75.795	Monopterus_albus
ENSMUSG00000008658	Rbfox1	100	100.000	MGP_CAROLIEiJ_G0020427	Rbfox1	100	99.760	Mus_caroli
ENSMUSG00000008658	Rbfox1	100	100.000	MGP_PahariEiJ_G0016135	Rbfox1	100	99.760	Mus_pahari
ENSMUSG00000008658	Rbfox1	100	100.000	MGP_SPRETEiJ_G0021321	Rbfox1	100	99.760	Mus_spretus
ENSMUSG00000008658	Rbfox1	98	97.173	ENSMPUG00000014822	RBFOX1	91	93.333	Mustela_putorius_furo
ENSMUSG00000008658	Rbfox1	99	93.939	ENSMLUG00000015896	RBFOX1	100	99.023	Myotis_lucifugus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSNGAG00000023276	Rbfox1	100	98.325	Nannospalax_galili
ENSMUSG00000008658	Rbfox1	99	68.345	ENSNBRG00000011084	rbfox1	98	59.070	Neolamprologus_brichardi
ENSMUSG00000008658	Rbfox1	100	99.248	ENSNLEG00000010017	-	100	97.368	Nomascus_leucogenys
ENSMUSG00000008658	Rbfox1	100	79.904	ENSMEUG00000012525	RBFOX1	100	79.904	Notamacropus_eugenii
ENSMUSG00000008658	Rbfox1	84	95.918	ENSOPRG00000006199	-	100	77.990	Ochotona_princeps
ENSMUSG00000008658	Rbfox1	100	99.248	ENSODEG00000013166	RBFOX1	100	96.725	Octodon_degus
ENSMUSG00000008658	Rbfox1	97	93.571	ENSOANG00000002379	RBFOX1	89	92.239	Ornithorhynchus_anatinus
ENSMUSG00000008658	Rbfox1	78	92.444	ENSOCUG00000001205	-	100	92.444	Oryctolagus_cuniculus
ENSMUSG00000008658	Rbfox1	100	96.222	ENSOGAG00000025535	RBFOX1	100	96.222	Otolemur_garnettii
ENSMUSG00000008658	Rbfox1	86	83.936	ENSOARG00000005135	RBFOX1	100	83.200	Ovis_aries
ENSMUSG00000008658	Rbfox1	100	97.931	ENSPPAG00000036238	-	100	98.196	Pan_paniscus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSPPRG00000006546	RBFOX1	100	97.368	Panthera_pardus
ENSMUSG00000008658	Rbfox1	100	85.390	ENSPTIG00000021154	RBFOX1	100	84.949	Panthera_tigris_altaica
ENSMUSG00000008658	Rbfox1	100	99.248	ENSPTRG00000007744	RBFOX1	100	97.608	Pan_troglodytes
ENSMUSG00000008658	Rbfox1	100	99.248	ENSPANG00000026500	RBFOX1	100	97.608	Papio_anubis
ENSMUSG00000008658	Rbfox1	96	82.310	ENSPKIG00000019353	rbfox1	86	83.448	Paramormyrops_kingsleyae
ENSMUSG00000008658	Rbfox1	99	86.364	ENSPKIG00000009667	-	95	84.571	Paramormyrops_kingsleyae
ENSMUSG00000008658	Rbfox1	99	92.875	ENSPSIG00000006523	RBFOX1	99	91.919	Pelodiscus_sinensis
ENSMUSG00000008658	Rbfox1	100	100.000	ENSPEMG00000017607	Rbfox1	100	99.760	Peromyscus_maniculatus_bairdii
ENSMUSG00000008658	Rbfox1	99	83.582	ENSPCIG00000026887	RBFOX1	100	92.069	Phascolarctos_cinereus
ENSMUSG00000008658	Rbfox1	98	97.173	ENSPPYG00000007079	-	91	93.611	Pongo_abelii
ENSMUSG00000008658	Rbfox1	96	86.643	ENSPCAG00000002630	RBFOX1	100	89.153	Procavia_capensis
ENSMUSG00000008658	Rbfox1	100	99.248	ENSPCOG00000025687	RBFOX1	100	97.129	Propithecus_coquereli
ENSMUSG00000008658	Rbfox1	100	93.062	ENSPVAG00000013467	RBFOX1	100	93.062	Pteropus_vampyrus
ENSMUSG00000008658	Rbfox1	99	87.879	ENSPNAG00000023109	rbfox1	100	82.275	Pygocentrus_nattereri
ENSMUSG00000008658	Rbfox1	100	97.122	ENSRNOG00000002827	Rbfox1	100	97.122	Rattus_norvegicus
ENSMUSG00000008658	Rbfox1	98	98.196	ENSRBIG00000044478	RBFOX1	100	98.196	Rhinopithecus_bieti
ENSMUSG00000008658	Rbfox1	100	99.248	ENSRROG00000044411	RBFOX1	100	97.608	Rhinopithecus_roxellana
ENSMUSG00000008658	Rbfox1	100	97.586	ENSSBOG00000033726	RBFOX1	99	95.707	Saimiri_boliviensis_boliviensis
ENSMUSG00000008658	Rbfox1	100	91.940	ENSSHAG00000009257	RBFOX1	100	91.940	Sarcophilus_harrisii
ENSMUSG00000008658	Rbfox1	100	71.866	ENSSFOG00015023675	rbfox1	93	87.778	Scleropages_formosus
ENSMUSG00000008658	Rbfox1	96	69.965	ENSSFOG00015009955	-	87	68.085	Scleropages_formosus
ENSMUSG00000008658	Rbfox1	99	87.121	ENSSMAG00000015505	rbfox1	93	75.980	Scophthalmus_maximus
ENSMUSG00000008658	Rbfox1	99	81.061	ENSSDUG00000016413	rbfox1	99	74.046	Seriola_dumerili
ENSMUSG00000008658	Rbfox1	98	70.530	ENSSLDG00000009353	rbfox1	97	71.726	Seriola_lalandi_dorsalis
ENSMUSG00000008658	Rbfox1	76	93.069	ENSSARG00000004936	-	70	98.551	Sorex_araneus
ENSMUSG00000008658	Rbfox1	91	84.270	ENSSPUG00000009732	RBFOX1	87	83.851	Sphenodon_punctatus
ENSMUSG00000008658	Rbfox1	99	87.121	ENSSPAG00000009723	rbfox1	100	75.616	Stegastes_partitus
ENSMUSG00000008658	Rbfox1	97	96.790	ENSSSCG00000007917	RBFOX1	98	96.790	Sus_scrofa
ENSMUSG00000008658	Rbfox1	98	93.814	ENSTGUG00000004562	RBFOX1	100	93.573	Taeniopygia_guttata
ENSMUSG00000008658	Rbfox1	99	86.364	ENSTRUG00000020940	rbfox1	100	74.817	Takifugu_rubripes
ENSMUSG00000008658	Rbfox1	67	62.051	ENSTNIG00000002567	rbfox1	100	59.797	Tetraodon_nigroviridis
ENSMUSG00000008658	Rbfox1	81	86.207	ENSTBEG00000009169	-	81	86.207	Tupaia_belangeri
ENSMUSG00000008658	Rbfox1	100	99.248	ENSTTRG00000005700	RBFOX1	100	96.890	Tursiops_truncatus
ENSMUSG00000008658	Rbfox1	98	97.173	ENSUAMG00000024633	RBFOX1	100	93.593	Ursus_americanus
ENSMUSG00000008658	Rbfox1	100	82.620	ENSUMAG00000003579	RBFOX1	100	82.620	Ursus_maritimus
ENSMUSG00000008658	Rbfox1	100	99.248	ENSVPAG00000001284	RBFOX1	81	98.701	Vicugna_pacos
ENSMUSG00000008658	Rbfox1	98	97.686	ENSVVUG00000017311	RBFOX1	90	97.187	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	23300487.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	21177649.22357600.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	22357600.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005802	trans-Golgi network	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007399	nervous system development	21873635.	IBA	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0050885	neuromuscular process controlling balance	22357600.	IGI	Process
GO:2001014	regulation of skeletal muscle cell differentiation	23349951.	IMP	Process