EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000210096	-	517	-	-	- (aa)	-	-
ENSMUST00000179233	-	1423	-	ENSMUSP00000136273	284 (aa)	-	J3QMG3
ENSMUST00000211222	-	4174	-	-	- (aa)	-	-
ENSMUST00000009036	-	1354	-	ENSMUSP00000009036	283 (aa)	-	Q60931

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04020	Calcium signaling pathway	KEGG
mmu04022	cGMP-PKG signaling pathway	KEGG
mmu04216	Ferroptosis	KEGG
mmu04217	Necroptosis	KEGG
mmu04218	Cellular senescence	KEGG
mmu04621	NOD-like receptor signaling pathway	KEGG
mmu04979	Cholesterol metabolism	KEGG
mmu05012	Parkinson disease	KEGG
mmu05016	Huntington disease	KEGG
mmu05161	Hepatitis B	KEGG
mmu05166	Human T-cell leukemia virus 1 infection	KEGG
mmu05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000008892	Vdac3	98	39.286	WBGene00019900	vdac-1	98	39.286	Caenorhabditis_elegans
ENSMUSG00000008892	Vdac3	100	73.852	ENSG00000165637	VDAC2	96	73.852	Homo_sapiens
ENSMUSG00000008892	Vdac3	100	67.491	ENSG00000213585	VDAC1	100	67.491	Homo_sapiens
ENSMUSG00000008892	Vdac3	100	73.145	ENSMUSG00000021771	Vdac2	100	73.145	Mus_musculus
ENSMUSG00000008892	Vdac3	100	67.491	ENSMUSG00000020402	Vdac1	100	67.491	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001662	behavioral fear response	11907043.	IMP	Process
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	23028046.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005741	mitochondrial outer membrane	21873635.	IBA	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005791	rough endoplasmic reticulum	-	ISO	Component
GO:0006811	ion transport	-	IEA	Process
GO:0007268	chemical synaptic transmission	11907043.	IMP	Process
GO:0007270	neuron-neuron synaptic transmission	11907043.	IMP	Process
GO:0007612	learning	11907043.	IMP	Process
GO:0008021	synaptic vesicle	-	ISO	Component
GO:0008308	voltage-gated anion channel activity	21873635.	IBA	Function
GO:0015288	porin activity	-	IEA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0046930	pore complex	-	IEA	Component
GO:0055085	transmembrane transport	-	IEA	Process
GO:0098656	anion transmembrane transport	-	IEA	Process
GO:1902017	regulation of cilium assembly	-	IEA	Process