EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000009090 (Gene tree)
Gene ID: 11764
Gene Symbol: Ap1b1
Alias: Adtb1|b2b1660Clo|beta-prime adaptin
Full Name: adaptor protein complex AP-1%2C beta 1 subunit
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 55968
Position: chr11: 4986824-5042791
Accession: 1096368
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137292	-	382	-	-	- (aa)	-	-
ENSMUST00000133007	-	818	-	-	- (aa)	-	-
ENSMUST00000145704	-	717	-	-	- (aa)	-	-
ENSMUST00000009234	-	4085	-	ENSMUSP00000009234	943 (aa)	-	O35643
ENSMUST00000133014	-	563	-	-	- (aa)	-	-
ENSMUST00000109897	-	3942	-	ENSMUSP00000105523	916 (aa)	-	Q5SVG5
ENSMUST00000144426	-	361	-	-	- (aa)	-	-
ENSMUST00000142325	-	847	-	-	- (aa)	-	-
ENSMUST00000101613	-	3735	XM_006514461	ENSMUSP00000099134	923 (aa)	XP_006514525	Q5SVG4

Gene Model

Click here to download ENSMUSG00000009090's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04142	Lysosome	KEGG
mmu05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000009090's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000009090	Ap1b1	100	96.925	ENSG00000100280	AP1B1	100	99.827	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	9733768.11106728.	IPI	Function
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005802	trans-Golgi network	9714600.	TAS	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006886	intracellular protein transport	9714600.	TAS	Process
GO:0007368	determination of left/right symmetry	25807483.	IMP	Process
GO:0007507	heart development	25807483.	IMP	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	9714600.	TAS	Process
GO:0019901	protein kinase binding	21307259.	IPI	Function
GO:0030117	membrane coat	-	IEA	Component
GO:0030131	clathrin adaptor complex	-	IEA	Component
GO:0030276	clathrin binding	-	IEA	Function
GO:0031410	cytoplasmic vesicle	-	IEA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0048268	clathrin coat assembly	-	ISO	Process