EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000009575 (Gene tree)
Gene ID: 12419
Gene Symbol: Cbx5
Alias: 2610029O15Rik|HP1|Hp1a|Hp1alpha|heterochromatin protein 1 alpha
Full Name: chromobox 5
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 48273
Position: chr15: 103191544-103239816
Accession: 109372
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000108813	-	3661	XM_006520376	ENSMUSP00000104441	191 (aa)	XP_006520439	Q61686
ENSMUST00000127191	-	376	-	ENSMUSP00000120837	42 (aa)	-	D3Z0U2
ENSMUST00000122182	-	1146	XM_006520374	ENSMUSP00000113158	191 (aa)	XP_006520437	Q61686
ENSMUST00000118152	-	8803	XM_006520372	ENSMUSP00000113157	191 (aa)	XP_006520435	Q61686

Gene Model

Click here to download ENSMUSG00000009575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000009575's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000118	histone deacetylase complex	12242305.	IDA	Component
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000776	kinetochore	14519686.	IDA	Component
GO:0000784	nuclear chromosome, telomeric region	20110566.	IDA	Component
GO:0000792	heterochromatin	15998811.	IDA	Component
GO:0003682	chromatin binding	10318760.	IDA	Function
GO:0005515	protein binding	8978696.10562550.15322135.17222401.18418073.22388734.24735877.	IPI	Function
GO:0005634	nucleus	10318760.17284516.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005720	nuclear heterochromatin	10318760.14730304.15070898.	IDA	Component
GO:0005721	pericentric heterochromatin	20110566.	IDA	Component
GO:0005730	nucleolus	10318760.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0010369	chromocenter	17284516.20219459.22101327.	IDA	Component
GO:0016605	PML body	-	ISO	Component
GO:0017053	transcriptional repressor complex	12242305.	IDA	Component
GO:0030674	protein binding, bridging	12242305.	IPI	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0035064	methylated histone binding	16127177.	IPI	Function
GO:0035064	methylated histone binding	-	ISO	Function
GO:0035097	histone methyltransferase complex	12242305.	IDA	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0042803	protein homodimerization activity	8978696.	IPI	Function
GO:0042826	histone deacetylase binding	12242305.	IPI	Function
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	10562550.	IDA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0070491	repressing transcription factor binding	12242305.	IPI	Function
GO:0090734	site of DNA damage	-	ISO	Component
GO:1990904	ribonucleoprotein complex	-	ISO	Component