EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000009585 (Gene tree)
Gene ID: 80287
Gene Symbol: Apobec3
Alias: CEM15|Gm20117|Rfv-3|Rfv3
Full Name: apolipoprotein B mRNA editing enzyme%2C catalytic polypeptide 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 24248 bases
Position: chr15:79891659-79915906
Accession: 1933111
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000132391	APOBEC_N	PF08210.11	1.1e-81	1	2
ENSMUSP00000132391	APOBEC_N	PF08210.11	1.1e-81	2	2
ENSMUSP00000135358	APOBEC_N	PF08210.11	1.2e-81	1	2
ENSMUSP00000135358	APOBEC_N	PF08210.11	1.2e-81	2	2
ENSMUSP00000105249	APOBEC_N	PF08210.11	1.6e-81	1	2
ENSMUSP00000105249	APOBEC_N	PF08210.11	1.6e-81	2	2
ENSMUSP00000134838	APOBEC_N	PF08210.11	1.6e-81	1	2
ENSMUSP00000134838	APOBEC_N	PF08210.11	1.6e-81	2	2
ENSMUSP00000135027	APOBEC_N	PF08210.11	1.7e-81	1	2
ENSMUSP00000135027	APOBEC_N	PF08210.11	1.7e-81	2	2
ENSMUSP00000023054	APOBEC_N	PF08210.11	1.1e-59	1	2
ENSMUSP00000023054	APOBEC_N	PF08210.11	1.1e-59	2	2
ENSMUSP00000135011	APOBEC_N	PF08210.11	2.8e-27	1	1
ENSMUSP00000134938	APOBEC_N	PF08210.11	3.6e-26	1	1
ENSMUSP00000135502	APOBEC_N	PF08210.11	4e-24	1	1
ENSMUSP00000155852	APOBEC_N	PF08210.11	1.5e-14	1	1
ENSMUSP00000023054	APOBEC_C	PF05240.14	1.3e-53	1	2
ENSMUSP00000023054	APOBEC_C	PF05240.14	1.3e-53	2	2
ENSMUSP00000132391	APOBEC_C	PF05240.14	2.8e-53	1	2
ENSMUSP00000132391	APOBEC_C	PF05240.14	2.8e-53	2	2
ENSMUSP00000135358	APOBEC_C	PF05240.14	3.1e-53	1	2
ENSMUSP00000135358	APOBEC_C	PF05240.14	3.1e-53	2	2
ENSMUSP00000105249	APOBEC_C	PF05240.14	3.6e-53	1	2
ENSMUSP00000105249	APOBEC_C	PF05240.14	3.6e-53	2	2
ENSMUSP00000134838	APOBEC_C	PF05240.14	3.7e-53	1	2
ENSMUSP00000134838	APOBEC_C	PF05240.14	3.7e-53	2	2
ENSMUSP00000135027	APOBEC_C	PF05240.14	4e-53	1	2
ENSMUSP00000135027	APOBEC_C	PF05240.14	4e-53	2	2
ENSMUSP00000135011	APOBEC_C	PF05240.14	1.5e-27	1	1
ENSMUSP00000134938	APOBEC_C	PF05240.14	1.9e-27	1	1
ENSMUSP00000135502	APOBEC_C	PF05240.14	4.7e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000176904	-	650	-	ENSMUSP00000135502	85 (aa)	-	H3BKS1
ENSMUST00000177483	-	826	-	ENSMUSP00000135011	151 (aa)	-	H3BJJ6
ENSMUST00000165537	-	2360	XM_017316807	ENSMUSP00000132391	396 (aa)	XP_017172296	Q3U5C5
ENSMUST00000176868	-	699	-	ENSMUSP00000135706	79 (aa)	-	H3BL97
ENSMUST00000175849	-	1693	-	-	- (aa)	-	-
ENSMUST00000109620	-	2459	-	ENSMUSP00000105249	429 (aa)	-	E9QMH1
ENSMUST00000177350	-	759	-	ENSMUSP00000134938	166 (aa)	-	H3BJD1
ENSMUST00000176644	-	2087	-	-	- (aa)	-	-
ENSMUST00000175714	-	1953	-	ENSMUSP00000135027	440 (aa)	-	Q99J72
ENSMUST00000175827	-	721	-	-	- (aa)	-	-
ENSMUST00000230741	-	420	-	ENSMUSP00000155418	62 (aa)	-	A0A2R8VHT8
ENSMUST00000023054	-	1842	XM_006521551	ENSMUSP00000023054	297 (aa)	XP_006521614	Q3TI69
ENSMUST00000176823	-	600	-	-	- (aa)	-	-
ENSMUST00000230410	-	3053	-	-	- (aa)	-	-
ENSMUST00000230135	-	599	-	ENSMUSP00000155852	97 (aa)	-	A0A2R8VKS7
ENSMUST00000177006	-	1217	-	ENSMUSP00000135507	46 (aa)	-	H3BKS5
ENSMUST00000175801	-	739	-	-	- (aa)	-	-
ENSMUST00000177098	-	2225	XM_017316806	ENSMUSP00000135079	392 (aa)	XP_017172295	Q99J72
ENSMUST00000175752	-	1977	-	ENSMUSP00000135358	407 (aa)	-	Q99J72
ENSMUST00000176325	-	2765	-	ENSMUSP00000134838	430 (aa)	-	Q99J72

Gene Model

Click here to download ENSMUSG00000009585's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000009585's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000009585	Apobec3	98	33.721	ENSMUSG00000040694	Apobec2	77	33.898
ENSMUSG00000009585	Apobec3	96	40.964	ENSMUSG00000040627	Aicda	91	39.344
ENSMUSG00000009585	Apobec3	96	35.366	ENSMUSG00000040613	Apobec1	74	35.789

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000009585	Apobec3	99	43.434	ENSG00000100298	APOBEC3H	99	47.590	Homo_sapiens
ENSMUSG00000009585	Apobec3	100	50.476	ENSAMEG00000010818	-	99	40.773	Ailuropoda_melanoleuca
ENSMUSG00000009585	Apobec3	99	46.078	ENSANAG00000025410	APOBEC3H	93	44.019	Aotus_nancymaae
ENSMUSG00000009585	Apobec3	98	53.012	ENSBTAG00000007755	APOBEC3H	91	47.955	Bos_taurus
ENSMUSG00000009585	Apobec3	99	46.465	ENSCJAG00000012524	APOBEC3H	99	49.359	Callithrix_jacchus
ENSMUSG00000009585	Apobec3	100	51.000	ENSCAFG00000001361	APOBEC3Z3	100	47.959	Canis_familiaris
ENSMUSG00000009585	Apobec3	100	51.000	ENSCAFG00020002584	-	100	47.283	Canis_lupus_dingo
ENSMUSG00000009585	Apobec3	98	50.602	ENSCHIG00000026580	-	97	46.866	Capra_hircus
ENSMUSG00000009585	Apobec3	99	49.000	ENSTSYG00000032894	-	94	50.909	Carlito_syrichta
ENSMUSG00000009585	Apobec3	98	50.526	ENSCPOG00000009257	-	93	46.447	Cavia_porcellus
ENSMUSG00000009585	Apobec3	99	44.554	ENSCCAG00000008525	APOBEC3H	95	47.317	Cebus_capucinus
ENSMUSG00000009585	Apobec3	97	47.423	ENSCATG00000030302	APOBEC3H	98	46.988	Cercocebus_atys
ENSMUSG00000009585	Apobec3	97	51.546	ENSCLAG00000016615	-	97	49.239	Chinchilla_lanigera
ENSMUSG00000009585	Apobec3	99	46.040	ENSCSAG00000006371	APOBEC3H	95	46.040	Chlorocebus_sabaeus
ENSMUSG00000009585	Apobec3	100	68.000	ENSCGRG00001022976	Apobec3	100	66.908	Cricetulus_griseus_chok1gshd
ENSMUSG00000009585	Apobec3	100	68.000	ENSCGRG00000005621	Apobec3	100	66.908	Cricetulus_griseus_crigri
ENSMUSG00000009585	Apobec3	100	56.471	ENSDORG00000027271	-	100	54.082	Dipodomys_ordii
ENSMUSG00000009585	Apobec3	98	48.889	ENSECAG00000007726	APOBEC3H	98	47.692	Equus_caballus
ENSMUSG00000009585	Apobec3	100	49.000	ENSFCAG00000005251	APOBEC3Z3	99	49.490	Felis_catus
ENSMUSG00000009585	Apobec3	100	44.340	ENSSTOG00000007125	-	86	47.399	Ictidomys_tridecemlineatus
ENSMUSG00000009585	Apobec3	97	55.789	ENSJJAG00000016840	-	99	48.522	Jaculus_jaculus
ENSMUSG00000009585	Apobec3	96	47.917	ENSLAFG00000027404	-	96	42.663	Loxodonta_africana
ENSMUSG00000009585	Apobec3	99	46.535	ENSMFAG00000031827	APOBEC3H	95	46.535	Macaca_fascicularis
ENSMUSG00000009585	Apobec3	99	46.535	ENSMMUG00000001016	APOBEC3H	95	44.776	Macaca_mulatta
ENSMUSG00000009585	Apobec3	99	46.535	ENSMNEG00000039259	APOBEC3H	95	46.535	Macaca_nemestrina
ENSMUSG00000009585	Apobec3	99	46.535	ENSMLEG00000033417	APOBEC3H	95	46.535	Mandrillus_leucophaeus
ENSMUSG00000009585	Apobec3	100	67.110	ENSMAUG00000011683	Apobec3	100	65.783	Mesocricetus_auratus
ENSMUSG00000009585	Apobec3	100	66.667	ENSMOCG00000021576	Apobec3	100	63.208	Microtus_ochrogaster
ENSMUSG00000009585	Apobec3	100	91.919	MGP_CAROLIEiJ_G0020029	Apobec3	100	91.919	Mus_caroli
ENSMUSG00000009585	Apobec3	100	87.342	MGP_PahariEiJ_G0020031	-	100	87.342	Mus_pahari
ENSMUSG00000009585	Apobec3	100	96.212	MGP_SPRETEiJ_G0020927	Apobec3	100	96.069	Mus_spretus
ENSMUSG00000009585	Apobec3	100	48.000	ENSMPUG00000013239	-	96	44.357	Mustela_putorius_furo
ENSMUSG00000009585	Apobec3	98	62.651	ENSNGAG00000018998	Apobec3	99	60.759	Nannospalax_galili
ENSMUSG00000009585	Apobec3	97	48.454	ENSNLEG00000015218	-	95	45.545	Nomascus_leucogenys
ENSMUSG00000009585	Apobec3	98	54.217	ENSOCUG00000023913	-	100	41.191	Oryctolagus_cuniculus
ENSMUSG00000009585	Apobec3	98	51.807	ENSOARG00000016290	APOBEC3F	95	47.778	Ovis_aries
ENSMUSG00000009585	Apobec3	97	45.361	ENSPPAG00000036522	APOBEC3H	100	43.784	Pan_paniscus
ENSMUSG00000009585	Apobec3	100	50.000	ENSPPRG00000003941	-	99	51.020	Panthera_pardus
ENSMUSG00000009585	Apobec3	98	45.783	ENSPPRG00000003675	-	94	46.465	Panthera_pardus
ENSMUSG00000009585	Apobec3	100	52.000	ENSPTIG00000010283	-	99	51.020	Panthera_tigris_altaica
ENSMUSG00000009585	Apobec3	97	45.361	ENSPTRG00000014390	APOBEC3H	100	43.784	Pan_troglodytes
ENSMUSG00000009585	Apobec3	97	48.454	ENSPANG00000010774	APOBEC3H	95	44.444	Papio_anubis
ENSMUSG00000009585	Apobec3	98	69.880	ENSPEMG00000000456	Apobec3	99	62.812	Peromyscus_maniculatus_bairdii
ENSMUSG00000009585	Apobec3	97	46.392	ENSPPYG00000011834	-	96	45.854	Pongo_abelii
ENSMUSG00000009585	Apobec3	98	39.759	ENSPCAG00000015655	-	99	40.580	Procavia_capensis
ENSMUSG00000009585	Apobec3	94	47.368	ENSPVAG00000009462	-	100	48.765	Pteropus_vampyrus
ENSMUSG00000009585	Apobec3	98	45.783	ENSPVAG00000024267	-	100	44.444	Pteropus_vampyrus
ENSMUSG00000009585	Apobec3	98	49.398	ENSPVAG00000024161	-	95	48.485	Pteropus_vampyrus
ENSMUSG00000009585	Apobec3	100	69.697	ENSRNOG00000016852	Apobec3	100	70.707	Rattus_norvegicus
ENSMUSG00000009585	Apobec3	97	49.485	ENSRBIG00000029088	APOBEC3H	96	47.590	Rhinopithecus_bieti
ENSMUSG00000009585	Apobec3	97	49.485	ENSRROG00000024699	APOBEC3H	96	47.590	Rhinopithecus_roxellana
ENSMUSG00000009585	Apobec3	99	49.505	ENSSBOG00000030005	APOBEC3H	100	51.049	Saimiri_boliviensis_boliviensis
ENSMUSG00000009585	Apobec3	97	47.423	ENSSSCG00000000091	APOBEC3B	98	41.190	Sus_scrofa
ENSMUSG00000009585	Apobec3	98	42.169	ENSTBEG00000001532	-	100	46.584	Tupaia_belangeri
ENSMUSG00000009585	Apobec3	97	48.980	ENSTTRG00000001266	-	99	46.988	Tursiops_truncatus
ENSMUSG00000009585	Apobec3	100	49.074	ENSUAMG00000004427	-	88	48.901	Ursus_americanus
ENSMUSG00000009585	Apobec3	100	51.485	ENSUMAG00000014435	-	99	50.761	Ursus_maritimus
ENSMUSG00000009585	Apobec3	88	45.333	ENSVPAG00000011108	-	98	46.847	Vicugna_pacos

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002244	hematopoietic progenitor cell differentiation	24029230.	IGI	Process
GO:0002376	immune system process	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004126	cytidine deaminase activity	21873635.	IBA	Function
GO:0005515	protein binding	18509452.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	16527742.	IDA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010529	negative regulation of transposition	16527742.	IDA	Process
GO:0010529	negative regulation of transposition	-	ISO	Process
GO:0016554	cytidine to uridine editing	21873635.	IBA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0045071	negative regulation of viral genome replication	16378963.	IDA	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0047844	deoxycytidine deaminase activity	-	ISO	Function
GO:0050688	regulation of defense response to virus	293683.	IMP	Process
GO:0051607	defense response to virus	-	ISO	Process
GO:0080111	DNA demethylation	21873635.	IBA	Process
GO:1903900	regulation of viral life cycle	293683.	IMP	Process