EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000009907 (Gene tree)
Gene ID: 20479
Gene Symbol: Vps4b
Alias: 8030489C12Rik|Skd1
Full Name: vacuolar protein sorting 4B
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 32658
Position: chr1: 106764071-106796728
Accession: 1100499
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000126057	-	847	-	-	- (aa)	-	-
ENSMUST00000127606	-	314	-	-	- (aa)	-	-
ENSMUST00000147705	-	709	-	-	- (aa)	-	-
ENSMUST00000094646	-	4633	-	ENSMUSP00000092230	444 (aa)	-	P46467
ENSMUST00000112736	-	4539	-	ENSMUSP00000108356	444 (aa)	-	P46467
ENSMUST00000190531	-	791	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000009907's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04144	Endocytosis	KEGG
mmu04217	Necroptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000009907's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000922	spindle pole	-	ISO	Component
GO:0005515	protein binding	12594041.15173323.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005768	endosome	11563910.	ISO	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005829	cytosol	10637304.15173323.16757520.	IDA	Component
GO:0006813	potassium ion transport	8082782.	IDA	Process
GO:0006997	nucleus organization	-	ISO	Process
GO:0007032	endosome organization	10637304.	IMP	Process
GO:0007033	vacuole organization	21873635.	IBA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007080	mitotic metaphase plate congression	-	ISO	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0010008	endosome membrane	-	ISO	Component
GO:0010824	regulation of centrosome duplication	-	ISO	Process
GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	-	ISO	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016197	endosomal transport	11563910.	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	21873635.	IBA	Function
GO:0016887	ATPase activity	11563910.	ISO	Function
GO:0019076	viral release from host cell	-	ISO	Process
GO:0030301	cholesterol transport	10637304.	IMP	Process
GO:0032510	endosome to lysosome transport via multivesicular body sorting pathway	-	ISO	Process
GO:0033993	response to lipid	-	ISO	Process
GO:0036258	multivesicular body assembly	21238931.	IMP	Process
GO:0039702	viral budding via host ESCRT complex	-	ISO	Process
GO:0042623	ATPase activity, coupled	-	ISO	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043162	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	-	ISO	Process
GO:0048524	positive regulation of viral process	17940959.	IMP	Process
GO:0048524	positive regulation of viral process	-	ISO	Process
GO:0050792	regulation of viral process	-	ISO	Process
GO:0051261	protein depolymerization	-	ISO	Process
GO:0051301	cell division	-	IEA	Process
GO:0060548	negative regulation of cell death	-	ISO	Process
GO:0061738	late endosomal microautophagy	21238931.	IMP	Process
GO:0061952	midbody abscission	-	ISO	Process
GO:0090543	Flemming body	-	ISO	Component
GO:0090611	ubiquitin-independent protein catabolic process via the multivesicular body sorting pathway	-	ISO	Process
GO:1901673	regulation of mitotic spindle assembly	-	ISO	Process
GO:1902188	positive regulation of viral release from host cell	-	ISO	Process
GO:1903542	negative regulation of exosomal secretion	-	ISO	Process
GO:1903543	positive regulation of exosomal secretion	-	ISO	Process
GO:1903724	positive regulation of centriole elongation	-	ISO	Process
GO:1903902	positive regulation of viral life cycle	-	ISO	Process