EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000010205 (Gene tree)
Gene ID: 71766
Gene Symbol: Raver1
Alias: 1300006N24Rik
Full Name: ribonucleoprotein%2C PTB-binding 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 17851 bases
Position: chr9:21074158-21092008
Accession: 1919016
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000111150	RRM_1	PF00076.22	5.9e-28	1	2
ENSMUSP00000111150	RRM_1	PF00076.22	5.9e-28	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000115487	-	3470	-	ENSMUSP00000111150	748 (aa)	-	Q9CW46

Gene Model

Click here to download ENSMUSG00000010205's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000010205's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000010205	Raver1	66	45.341	ENSMUSG00000035275	Raver2	76	54.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000010205	Raver1	100	87.968	ENSG00000161847	RAVER1	100	87.433	Homo_sapiens
ENSMUSG00000010205	Raver1	100	87.433	ENSAMEG00000011738	RAVER1	98	87.299	Ailuropoda_melanoleuca
ENSMUSG00000010205	Raver1	78	62.338	ENSAPEG00000010854	raver1	83	62.338	Amphiprion_percula
ENSMUSG00000010205	Raver1	97	50.000	ENSATEG00000021004	raver1	91	49.049	Anabas_testudineus
ENSMUSG00000010205	Raver1	84	58.537	ENSACAG00000008386	-	91	59.309	Anolis_carolinensis
ENSMUSG00000010205	Raver1	100	87.299	ENSANAG00000028226	RAVER1	98	87.299	Aotus_nancymaae
ENSMUSG00000010205	Raver1	74	87.500	ENSACLG00000018492	raver1	76	87.500	Astatotilapia_calliptera
ENSMUSG00000010205	Raver1	77	80.000	ENSAMXG00000005132	raver1	81	75.000	Astyanax_mexicanus
ENSMUSG00000010205	Raver1	100	86.765	ENSBTAG00000015721	RAVER1	97	93.506	Bos_taurus
ENSMUSG00000010205	Raver1	100	87.433	ENSCJAG00000005671	RAVER1	98	87.433	Callithrix_jacchus
ENSMUSG00000010205	Raver1	100	86.765	ENSCAFG00000017861	RAVER1	98	87.032	Canis_familiaris
ENSMUSG00000010205	Raver1	100	86.765	ENSCAFG00020024449	RAVER1	100	87.032	Canis_lupus_dingo
ENSMUSG00000010205	Raver1	100	86.364	ENSCHIG00000006718	RAVER1	100	86.497	Capra_hircus
ENSMUSG00000010205	Raver1	91	82.749	ENSTSYG00000027107	RAVER1	100	82.310	Carlito_syrichta
ENSMUSG00000010205	Raver1	90	86.370	ENSCAPG00000002269	RAVER1	100	86.815	Cavia_aperea
ENSMUSG00000010205	Raver1	100	88.235	ENSCPOG00000001008	RAVER1	100	88.770	Cavia_porcellus
ENSMUSG00000010205	Raver1	100	87.701	ENSCCAG00000031723	RAVER1	98	87.032	Cebus_capucinus
ENSMUSG00000010205	Raver1	100	88.636	ENSCATG00000043863	RAVER1	98	88.102	Cercocebus_atys
ENSMUSG00000010205	Raver1	100	89.319	ENSCLAG00000009336	RAVER1	100	88.785	Chinchilla_lanigera
ENSMUSG00000010205	Raver1	100	88.770	ENSCSAG00000007317	RAVER1	84	88.235	Chlorocebus_sabaeus
ENSMUSG00000010205	Raver1	96	61.874	ENSCPBG00000005349	-	96	60.540	Chrysemys_picta_bellii
ENSMUSG00000010205	Raver1	100	88.904	ENSCANG00000008337	RAVER1	98	88.369	Colobus_angolensis_palliatus
ENSMUSG00000010205	Raver1	100	96.390	ENSCGRG00001013260	-	100	96.390	Cricetulus_griseus_chok1gshd
ENSMUSG00000010205	Raver1	100	96.390	ENSCGRG00000015138	-	100	96.390	Cricetulus_griseus_crigri
ENSMUSG00000010205	Raver1	72	80.769	ENSCSEG00000021092	raver1	76	80.769	Cynoglossus_semilaevis
ENSMUSG00000010205	Raver1	98	49.471	ENSCVAG00000013971	raver1	81	61.616	Cyprinodon_variegatus
ENSMUSG00000010205	Raver1	100	80.784	ENSDORG00000010106	-	100	79.739	Dipodomys_ordii
ENSMUSG00000010205	Raver1	67	73.171	ENSETEG00000008201	-	74	87.437	Echinops_telfairi
ENSMUSG00000010205	Raver1	66	91.932	ENSEASG00005010544	-	90	87.927	Equus_asinus_asinus
ENSMUSG00000010205	Raver1	100	89.973	ENSECAG00000024966	RAVER1	98	89.973	Equus_caballus
ENSMUSG00000010205	Raver1	98	50.870	ENSELUG00000023287	raver1	92	51.425	Esox_lucius
ENSMUSG00000010205	Raver1	100	89.037	ENSFCAG00000009435	RAVER1	98	89.037	Felis_catus
ENSMUSG00000010205	Raver1	100	88.117	ENSFDAG00000015113	RAVER1	100	87.984	Fukomys_damarensis
ENSMUSG00000010205	Raver1	81	60.825	ENSGMOG00000003649	raver1	81	60.825	Gadus_morhua
ENSMUSG00000010205	Raver1	66	44.554	ENSGALG00000050608	-	52	44.135	Gallus_gallus
ENSMUSG00000010205	Raver1	96	62.119	ENSGAGG00000011748	-	95	76.685	Gopherus_agassizii
ENSMUSG00000010205	Raver1	100	87.701	ENSGGOG00000006015	RAVER1	98	87.166	Gorilla_gorilla
ENSMUSG00000010205	Raver1	74	84.314	ENSHBUG00000021210	raver1	76	84.314	Haplochromis_burtoni
ENSMUSG00000010205	Raver1	100	88.385	ENSHGLG00000015460	RAVER1	100	87.850	Heterocephalus_glaber_female
ENSMUSG00000010205	Raver1	100	88.385	ENSHGLG00100000812	RAVER1	100	87.850	Heterocephalus_glaber_male
ENSMUSG00000010205	Raver1	98	49.933	ENSHCOG00000000449	raver1	89	49.658	Hippocampus_comes
ENSMUSG00000010205	Raver1	80	60.784	ENSIPUG00000013153	raver1	81	60.784	Ictalurus_punctatus
ENSMUSG00000010205	Raver1	100	89.706	ENSSTOG00000003241	RAVER1	100	89.171	Ictidomys_tridecemlineatus
ENSMUSG00000010205	Raver1	100	90.387	ENSJJAG00000018219	-	100	90.254	Jaculus_jaculus
ENSMUSG00000010205	Raver1	97	49.800	ENSKMAG00000017355	raver1	91	47.638	Kryptolebias_marmoratus
ENSMUSG00000010205	Raver1	89	49.057	ENSLBEG00000008268	raver1	68	56.410	Labrus_bergylta
ENSMUSG00000010205	Raver1	90	60.000	ENSLACG00000005809	-	99	60.340	Latimeria_chalumnae
ENSMUSG00000010205	Raver1	96	55.836	ENSLOCG00000007500	raver1	92	54.437	Lepisosteus_oculatus
ENSMUSG00000010205	Raver1	100	88.117	ENSLAFG00000003664	-	100	88.385	Loxodonta_africana
ENSMUSG00000010205	Raver1	100	88.235	ENSMFAG00000037977	RAVER1	98	87.701	Macaca_fascicularis
ENSMUSG00000010205	Raver1	100	88.503	ENSMMUG00000014897	RAVER1	98	87.968	Macaca_mulatta
ENSMUSG00000010205	Raver1	100	88.503	ENSMNEG00000028390	RAVER1	98	87.968	Macaca_nemestrina
ENSMUSG00000010205	Raver1	100	88.503	ENSMLEG00000041959	RAVER1	98	87.968	Mandrillus_leucophaeus
ENSMUSG00000010205	Raver1	75	79.245	ENSMAMG00000012059	raver1	57	79.245	Mastacembelus_armatus
ENSMUSG00000010205	Raver1	74	87.500	ENSMZEG00005019002	raver1	76	87.500	Maylandia_zebra
ENSMUSG00000010205	Raver1	100	95.187	ENSMAUG00000017948	-	100	95.053	Mesocricetus_auratus
ENSMUSG00000010205	Raver1	99	86.479	ENSMICG00000010326	RAVER1	99	86.345	Microcebus_murinus
ENSMUSG00000010205	Raver1	100	95.722	ENSMOCG00000015553	-	100	95.722	Microtus_ochrogaster
ENSMUSG00000010205	Raver1	99	50.200	ENSMMOG00000012093	raver1	79	59.000	Mola_mola
ENSMUSG00000010205	Raver1	97	74.110	ENSMODG00000005584	-	89	73.699	Monodelphis_domestica
ENSMUSG00000010205	Raver1	100	99.198	MGP_CAROLIEiJ_G0031860	-	100	99.198	Mus_caroli
ENSMUSG00000010205	Raver1	100	97.606	MGP_PahariEiJ_G0014726	-	100	97.606	Mus_pahari
ENSMUSG00000010205	Raver1	100	99.866	MGP_SPRETEiJ_G0032984	-	100	99.866	Mus_spretus
ENSMUSG00000010205	Raver1	100	88.770	ENSMPUG00000006712	RAVER1	98	88.636	Mustela_putorius_furo
ENSMUSG00000010205	Raver1	100	85.695	ENSMLUG00000012328	RAVER1	100	86.096	Myotis_lucifugus
ENSMUSG00000010205	Raver1	100	90.521	ENSNGAG00000001260	-	100	90.521	Nannospalax_galili
ENSMUSG00000010205	Raver1	68	47.860	ENSNBRG00000010139	raver1	65	49.503	Neolamprologus_brichardi
ENSMUSG00000010205	Raver1	100	88.102	ENSNLEG00000012181	RAVER1	98	87.567	Nomascus_leucogenys
ENSMUSG00000010205	Raver1	90	73.460	ENSMEUG00000003281	-	100	72.141	Notamacropus_eugenii
ENSMUSG00000010205	Raver1	50	85.156	ENSOPRG00000005855	-	51	85.156	Ochotona_princeps
ENSMUSG00000010205	Raver1	100	88.652	ENSODEG00000016260	RAVER1	100	88.117	Octodon_degus
ENSMUSG00000010205	Raver1	78	63.750	ENSONIG00000001559	raver1	99	50.611	Oreochromis_niloticus
ENSMUSG00000010205	Raver1	100	81.818	ENSOCUG00000020918	RAVER1	98	82.353	Oryctolagus_cuniculus
ENSMUSG00000010205	Raver1	70	61.609	ENSORLG00000005458	raver1	67	64.677	Oryzias_latipes
ENSMUSG00000010205	Raver1	70	61.379	ENSORLG00020004392	raver1	67	64.428	Oryzias_latipes_hni
ENSMUSG00000010205	Raver1	70	61.149	ENSORLG00015017222	raver1	67	64.179	Oryzias_latipes_hsok
ENSMUSG00000010205	Raver1	75	83.673	ENSOMEG00000023956	raver1	67	83.673	Oryzias_melastigma
ENSMUSG00000010205	Raver1	100	87.166	ENSOGAG00000011071	RAVER1	98	86.765	Otolemur_garnettii
ENSMUSG00000010205	Raver1	100	84.759	ENSOARG00000015886	RAVER1	98	84.759	Ovis_aries
ENSMUSG00000010205	Raver1	100	87.968	ENSPPAG00000002611	RAVER1	98	87.433	Pan_paniscus
ENSMUSG00000010205	Raver1	100	89.439	ENSPPRG00000009912	RAVER1	98	89.439	Panthera_pardus
ENSMUSG00000010205	Raver1	100	87.968	ENSPTRG00000010466	RAVER1	98	87.433	Pan_troglodytes
ENSMUSG00000010205	Raver1	100	88.503	ENSPANG00000004122	RAVER1	98	87.968	Papio_anubis
ENSMUSG00000010205	Raver1	100	95.995	ENSPEMG00000016411	-	100	95.995	Peromyscus_maniculatus_bairdii
ENSMUSG00000010205	Raver1	100	75.762	ENSPCIG00000018695	-	99	79.605	Phascolarctos_cinereus
ENSMUSG00000010205	Raver1	63	66.578	ENSPLAG00000020793	raver1	79	56.093	Poecilia_latipinna
ENSMUSG00000010205	Raver1	99	51.467	ENSPMEG00000011220	raver1	91	50.204	Poecilia_mexicana
ENSMUSG00000010205	Raver1	74	90.698	ENSPREG00000006864	raver1	77	90.698	Poecilia_reticulata
ENSMUSG00000010205	Raver1	100	87.299	ENSPPYG00000010514	RAVER1	84	86.898	Pongo_abelii
ENSMUSG00000010205	Raver1	100	88.133	ENSPCOG00000026605	RAVER1	98	88.267	Propithecus_coquereli
ENSMUSG00000010205	Raver1	100	87.701	ENSPVAG00000003689	RAVER1	100	87.834	Pteropus_vampyrus
ENSMUSG00000010205	Raver1	64	84.314	ENSPNYG00000013284	raver1	65	84.314	Pundamilia_nyererei
ENSMUSG00000010205	Raver1	98	51.200	ENSPNAG00000015476	raver1	91	51.084	Pygocentrus_nattereri
ENSMUSG00000010205	Raver1	100	96.658	ENSRNOG00000020710	Raver1	100	96.658	Rattus_norvegicus
ENSMUSG00000010205	Raver1	100	87.834	ENSRBIG00000034702	RAVER1	98	87.968	Rhinopithecus_bieti
ENSMUSG00000010205	Raver1	100	86.230	ENSRROG00000031186	RAVER1	98	85.561	Rhinopithecus_roxellana
ENSMUSG00000010205	Raver1	100	85.160	ENSSBOG00000023423	RAVER1	98	84.358	Saimiri_boliviensis_boliviensis
ENSMUSG00000010205	Raver1	90	74.085	ENSSHAG00000008181	-	90	73.353	Sarcophilus_harrisii
ENSMUSG00000010205	Raver1	98	50.660	ENSSDUG00000021063	raver1	84	55.492	Seriola_dumerili
ENSMUSG00000010205	Raver1	68	57.663	ENSSLDG00000014505	raver1	66	56.582	Seriola_lalandi_dorsalis
ENSMUSG00000010205	Raver1	79	61.905	ENSSPAG00000000688	raver1	82	57.658	Stegastes_partitus
ENSMUSG00000010205	Raver1	100	89.305	ENSSSCG00000013650	-	98	89.439	Sus_scrofa
ENSMUSG00000010205	Raver1	97	50.270	ENSTRUG00000025641	raver1	78	59.000	Takifugu_rubripes
ENSMUSG00000010205	Raver1	100	87.834	ENSTTRG00000009552	RAVER1	100	88.235	Tursiops_truncatus
ENSMUSG00000010205	Raver1	100	89.171	ENSUAMG00000020385	RAVER1	98	89.037	Ursus_americanus
ENSMUSG00000010205	Raver1	100	86.765	ENSVVUG00000028976	RAVER1	98	87.032	Vulpes_vulpes
ENSMUSG00000010205	Raver1	98	55.962	ENSXETG00000011622	raver1	95	55.540	Xenopus_tropicalis
ENSMUSG00000010205	Raver1	99	50.663	ENSXCOG00000016368	raver1	68	63.462	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component