EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000010608 (Gene tree)
Gene ID: 67039
Gene Symbol: Rbm25
Alias: 2600011C06Rik|2610015J01Rik|A130095G20Rik
Full Name: RNA binding motif protein 25
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 51888 bases
Position: chr12:83631236-83683123
Accession: 1914289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000138565	RRM_1	PF00076.22	2e-09	1	1
ENSMUSP00000138665	RRM_1	PF00076.22	8.5e-09	1	1
ENSMUSP00000138572	RRM_1	PF00076.22	1.1e-08	1	1
ENSMUSP00000048470	RRM_1	PF00076.22	1.6e-08	1	1
ENSMUSP00000048470	PWI	PF01480.17	1.4e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000181983	-	2046	-	ENSMUSP00000138572	585 (aa)	-	S4R2B0
ENSMUST00000183181	-	609	-	-	- (aa)	-	-
ENSMUST00000182450	-	2994	-	ENSMUSP00000138416	163 (aa)	-	S4R1X9
ENSMUST00000182347	-	548	-	ENSMUSP00000138410	37 (aa)	-	S4R1X5
ENSMUST00000182618	-	765	-	ENSMUSP00000138665	174 (aa)	-	S4R2J1
ENSMUST00000183039	-	444	-	-	- (aa)	-	-
ENSMUST00000182004	-	503	-	ENSMUSP00000138573	84 (aa)	-	S4R2B1
ENSMUST00000182032	-	3806	-	-	- (aa)	-	-
ENSMUST00000182840	-	518	-	-	- (aa)	-	-
ENSMUST00000048155	-	4226	XM_006516164	ENSMUSP00000048470	838 (aa)	XP_006516227	B2RY56
ENSMUST00000182036	-	788	-	ENSMUSP00000138565	194 (aa)	-	S4R2A4
ENSMUST00000182255	-	4672	-	-	- (aa)	-	-
ENSMUST00000183154	-	608	-	ENSMUSP00000138669	102 (aa)	-	S4R2J4
ENSMUST00000183282	-	278	-	-	- (aa)	-	-
ENSMUST00000182633	-	1116	-	ENSMUSP00000138625	194 (aa)	-	S4R2F7
ENSMUST00000182881	-	4608	-	-	- (aa)	-	-
ENSMUST00000183242	-	1060	-	-	- (aa)	-	-
ENSMUST00000183128	-	576	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000010608's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000010608's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000010608	Rbm25	100	99.170	ENSG00000119707	RBM25	100	99.213	Homo_sapiens
ENSMUSG00000010608	Rbm25	94	74.457	ENSAPOG00000017757	rbm25a	54	76.794	Acanthochromis_polyacanthus
ENSMUSG00000010608	Rbm25	100	99.051	ENSAMEG00000016270	RBM25	100	99.051	Ailuropoda_melanoleuca
ENSMUSG00000010608	Rbm25	93	72.928	ENSACIG00000014178	rbm25b	53	68.027	Amphilophus_citrinellus
ENSMUSG00000010608	Rbm25	93	73.626	ENSAOCG00000019308	rbm25b	53	76.202	Amphiprion_ocellaris
ENSMUSG00000010608	Rbm25	94	74.457	ENSAOCG00000013695	rbm25a	52	77.831	Amphiprion_ocellaris
ENSMUSG00000010608	Rbm25	93	73.626	ENSAPEG00000009666	rbm25b	57	72.500	Amphiprion_percula
ENSMUSG00000010608	Rbm25	94	74.457	ENSAPEG00000007514	rbm25a	53	77.831	Amphiprion_percula
ENSMUSG00000010608	Rbm25	78	94.118	ENSAPLG00000006643	RBM25	52	96.296	Anas_platyrhynchos
ENSMUSG00000010608	Rbm25	100	99.288	ENSANAG00000028295	RBM25	100	99.288	Aotus_nancymaae
ENSMUSG00000010608	Rbm25	99	86.525	ENSAMXG00000024525	rbm25b	53	74.886	Astyanax_mexicanus
ENSMUSG00000010608	Rbm25	100	99.051	ENSBTAG00000017177	RBM25	100	99.051	Bos_taurus
ENSMUSG00000010608	Rbm25	100	99.051	ENSCJAG00000014441	-	100	99.051	Callithrix_jacchus
ENSMUSG00000010608	Rbm25	80	98.726	ENSCAFG00000016809	-	98	98.544	Canis_familiaris
ENSMUSG00000010608	Rbm25	100	98.974	ENSTSYG00000003024	RBM25	100	98.814	Carlito_syrichta
ENSMUSG00000010608	Rbm25	50	97.701	ENSCAPG00000005239	RBM25	57	98.837	Cavia_aperea
ENSMUSG00000010608	Rbm25	100	98.974	ENSCPOG00000002479	RBM25	100	98.932	Cavia_porcellus
ENSMUSG00000010608	Rbm25	100	99.051	ENSCATG00000039651	RBM25	100	99.051	Cercocebus_atys
ENSMUSG00000010608	Rbm25	100	98.851	ENSCLAG00000003977	RBM25	100	98.814	Chinchilla_lanigera
ENSMUSG00000010608	Rbm25	100	99.051	ENSCSAG00000012801	RBM25	100	99.051	Chlorocebus_sabaeus
ENSMUSG00000010608	Rbm25	93	77.778	ENSCHOG00000008903	RBM25	63	99.412	Choloepus_hoffmanni
ENSMUSG00000010608	Rbm25	100	98.462	ENSCANG00000043874	RBM25	99	98.621	Colobus_angolensis_palliatus
ENSMUSG00000010608	Rbm25	100	99.659	ENSCGRG00000017595	Rbm25	100	99.642	Cricetulus_griseus_crigri
ENSMUSG00000010608	Rbm25	96	71.123	ENSCSEG00000020737	rbm25b	52	73.913	Cynoglossus_semilaevis
ENSMUSG00000010608	Rbm25	99	71.649	ENSCVAG00000003478	rbm25b	54	68.552	Cyprinodon_variegatus
ENSMUSG00000010608	Rbm25	91	65.193	ENSDARG00000039266	rbm25a	98	94.872	Danio_rerio
ENSMUSG00000010608	Rbm25	100	98.974	ENSDNOG00000004959	RBM25	100	98.932	Dasypus_novemcinctus
ENSMUSG00000010608	Rbm25	100	96.441	ENSDORG00000013247	Rbm25	100	96.441	Dipodomys_ordii
ENSMUSG00000010608	Rbm25	100	95.957	ENSETEG00000015941	RBM25	100	95.957	Echinops_telfairi
ENSMUSG00000010608	Rbm25	64	57.803	ENSEBUG00000002963	rbm25b	55	65.116	Eptatretus_burgeri
ENSMUSG00000010608	Rbm25	100	97.949	ENSEEUG00000007350	RBM25	100	90.071	Erinaceus_europaeus
ENSMUSG00000010608	Rbm25	100	99.051	ENSFCAG00000011716	RBM25	100	99.051	Felis_catus
ENSMUSG00000010608	Rbm25	100	96.944	ENSFALG00000005445	RBM25	70	96.944	Ficedula_albicollis
ENSMUSG00000010608	Rbm25	100	98.974	ENSFDAG00000006542	RBM25	100	98.932	Fukomys_damarensis
ENSMUSG00000010608	Rbm25	93	76.374	ENSFHEG00000005318	rbm25a	50	70.433	Fundulus_heteroclitus
ENSMUSG00000010608	Rbm25	76	74.510	ENSGMOG00000014070	rbm25a	85	72.684	Gadus_morhua
ENSMUSG00000010608	Rbm25	88	80.714	ENSGMOG00000014097	rbm25b	89	67.331	Gadus_morhua
ENSMUSG00000010608	Rbm25	100	94.898	ENSGALG00000047486	-	62	89.619	Gallus_gallus
ENSMUSG00000010608	Rbm25	100	67.840	ENSGAFG00000001092	rbm25b	50	72.639	Gambusia_affinis
ENSMUSG00000010608	Rbm25	99	74.872	ENSGAFG00000018036	rbm25a	52	77.273	Gambusia_affinis
ENSMUSG00000010608	Rbm25	100	99.170	ENSGGOG00000002415	RBM25	100	99.170	Gorilla_gorilla
ENSMUSG00000010608	Rbm25	92	72.626	ENSHBUG00000016908	rbm25a	51	78.554	Haplochromis_burtoni
ENSMUSG00000010608	Rbm25	100	98.974	ENSHGLG00000014745	RBM25	100	98.695	Heterocephalus_glaber_female
ENSMUSG00000010608	Rbm25	100	98.974	ENSHGLG00100018236	-	100	98.974	Heterocephalus_glaber_male
ENSMUSG00000010608	Rbm25	100	66.983	ENSHCOG00000000142	rbm25b	52	75.980	Hippocampus_comes
ENSMUSG00000010608	Rbm25	100	66.471	ENSIPUG00000021051	rbm25b	52	77.590	Ictalurus_punctatus
ENSMUSG00000010608	Rbm25	100	99.051	ENSSTOG00000011117	RBM25	100	99.051	Ictidomys_tridecemlineatus
ENSMUSG00000010608	Rbm25	94	70.652	ENSKMAG00000018826	rbm25b	52	74.334	Kryptolebias_marmoratus
ENSMUSG00000010608	Rbm25	98	68.229	ENSKMAG00000016242	rbm25a	54	76.867	Kryptolebias_marmoratus
ENSMUSG00000010608	Rbm25	100	68.706	ENSLBEG00000010667	rbm25b	52	77.240	Labrus_bergylta
ENSMUSG00000010608	Rbm25	95	87.097	ENSLACG00000011845	RBM25	50	91.133	Latimeria_chalumnae
ENSMUSG00000010608	Rbm25	95	84.946	ENSLOCG00000014196	rbm25b	51	84.541	Lepisosteus_oculatus
ENSMUSG00000010608	Rbm25	100	99.051	ENSMFAG00000040040	RBM25	100	99.051	Macaca_fascicularis
ENSMUSG00000010608	Rbm25	100	99.051	ENSMMUG00000002332	RBM25	100	99.365	Macaca_mulatta
ENSMUSG00000010608	Rbm25	100	96.679	ENSMNEG00000032922	RBM25	100	96.679	Macaca_nemestrina
ENSMUSG00000010608	Rbm25	100	99.051	ENSMLEG00000035157	RBM25	100	99.051	Mandrillus_leucophaeus
ENSMUSG00000010608	Rbm25	92	66.667	ENSMAMG00000000165	rbm25a	51	78.030	Mastacembelus_armatus
ENSMUSG00000010608	Rbm25	93	73.077	ENSMZEG00005011183	rbm25a	54	78.554	Maylandia_zebra
ENSMUSG00000010608	Rbm25	100	99.051	ENSMICG00000034082	RBM25	100	99.051	Microcebus_murinus
ENSMUSG00000010608	Rbm25	100	97.500	ENSMOCG00000001935	Rbm25	100	97.500	Microtus_ochrogaster
ENSMUSG00000010608	Rbm25	78	84.884	ENSMMOG00000009065	rbm25a	53	77.938	Mola_mola
ENSMUSG00000010608	Rbm25	95	86.232	ENSMMOG00000015545	rbm25b	53	85.211	Mola_mola
ENSMUSG00000010608	Rbm25	100	96.410	ENSMODG00000006820	RBM25	99	98.216	Monodelphis_domestica
ENSMUSG00000010608	Rbm25	100	100.000	MGP_CAROLIEiJ_G0017921	Rbm25	100	100.000	Mus_caroli
ENSMUSG00000010608	Rbm25	100	100.000	MGP_PahariEiJ_G0029677	Rbm25	100	100.000	Mus_pahari
ENSMUSG00000010608	Rbm25	100	100.000	MGP_SPRETEiJ_G0018766	-	100	100.000	Mus_spretus
ENSMUSG00000010608	Rbm25	100	94.359	ENSMLUG00000024167	-	50	92.346	Myotis_lucifugus
ENSMUSG00000010608	Rbm25	100	98.462	ENSMLUG00000015434	-	100	93.817	Myotis_lucifugus
ENSMUSG00000010608	Rbm25	100	99.524	ENSNGAG00000018465	Rbm25	100	99.524	Nannospalax_galili
ENSMUSG00000010608	Rbm25	92	72.626	ENSNBRG00000003761	rbm25a	52	82.222	Neolamprologus_brichardi
ENSMUSG00000010608	Rbm25	100	98.974	ENSNLEG00000002701	RBM25	100	98.932	Nomascus_leucogenys
ENSMUSG00000010608	Rbm25	74	97.902	ENSOPRG00000016744	-	66	97.931	Ochotona_princeps
ENSMUSG00000010608	Rbm25	100	96.323	ENSOANG00000001056	RBM25	98	96.323	Ornithorhynchus_anatinus
ENSMUSG00000010608	Rbm25	100	98.932	ENSOCUG00000013737	RBM25	100	98.932	Oryctolagus_cuniculus
ENSMUSG00000010608	Rbm25	65	74.803	ENSORLG00000024690	-	98	74.803	Oryzias_latipes
ENSMUSG00000010608	Rbm25	98	71.354	ENSORLG00020016422	rbm25b	51	75.545	Oryzias_latipes_hni
ENSMUSG00000010608	Rbm25	93	75.824	ENSORLG00015022499	rbm25a	56	81.343	Oryzias_latipes_hsok
ENSMUSG00000010608	Rbm25	100	94.662	ENSOGAG00000014986	RBM25	100	94.662	Otolemur_garnettii
ENSMUSG00000010608	Rbm25	100	99.051	ENSOARG00000000319	RBM25	100	99.051	Ovis_aries
ENSMUSG00000010608	Rbm25	100	99.170	ENSPPAG00000039402	RBM25	100	99.170	Pan_paniscus
ENSMUSG00000010608	Rbm25	100	99.051	ENSPPRG00000017374	RBM25	100	99.051	Panthera_pardus
ENSMUSG00000010608	Rbm25	100	99.051	ENSPTIG00000017309	RBM25	100	99.051	Panthera_tigris_altaica
ENSMUSG00000010608	Rbm25	100	99.170	ENSPTRG00000006509	RBM25	100	99.170	Pan_troglodytes
ENSMUSG00000010608	Rbm25	100	99.051	ENSPANG00000018212	RBM25	100	99.051	Papio_anubis
ENSMUSG00000010608	Rbm25	95	82.258	ENSPKIG00000003203	rbm25b	54	79.954	Paramormyrops_kingsleyae
ENSMUSG00000010608	Rbm25	100	97.274	ENSPSIG00000006058	RBM25	100	96.786	Pelodiscus_sinensis
ENSMUSG00000010608	Rbm25	94	93.273	ENSPCIG00000011166	RBM25	70	93.273	Phascolarctos_cinereus
ENSMUSG00000010608	Rbm25	99	73.469	ENSPLAG00000018338	rbm25a	52	78.365	Poecilia_latipinna
ENSMUSG00000010608	Rbm25	99	73.469	ENSPMEG00000024470	rbm25a	52	78.365	Poecilia_mexicana
ENSMUSG00000010608	Rbm25	94	74.457	ENSPMEG00000019161	rbm25b	50	72.182	Poecilia_mexicana
ENSMUSG00000010608	Rbm25	99	73.980	ENSPREG00000009228	rbm25a	53	77.885	Poecilia_reticulata
ENSMUSG00000010608	Rbm25	100	98.974	ENSPCAG00000006226	RBM25	83	99.561	Procavia_capensis
ENSMUSG00000010608	Rbm25	100	98.462	ENSPCOG00000023107	RBM25	100	98.814	Propithecus_coquereli
ENSMUSG00000010608	Rbm25	100	95.730	ENSPVAG00000003931	RBM25	100	95.730	Pteropus_vampyrus
ENSMUSG00000010608	Rbm25	94	66.304	ENSPNYG00000022596	rbm25a	52	78.554	Pundamilia_nyererei
ENSMUSG00000010608	Rbm25	94	81.622	ENSPNAG00000012024	rbm25b	53	74.771	Pygocentrus_nattereri
ENSMUSG00000010608	Rbm25	100	100.000	ENSRNOG00000002871	Rbm25l1	100	96.901	Rattus_norvegicus
ENSMUSG00000010608	Rbm25	100	99.051	ENSRBIG00000039904	RBM25	100	99.051	Rhinopithecus_bieti
ENSMUSG00000010608	Rbm25	100	99.051	ENSRROG00000035556	RBM25	100	99.051	Rhinopithecus_roxellana
ENSMUSG00000010608	Rbm25	100	96.410	ENSSHAG00000012859	RBM25	100	97.867	Sarcophilus_harrisii
ENSMUSG00000010608	Rbm25	94	70.109	ENSSMAG00000002520	rbm25b	55	61.915	Scophthalmus_maximus
ENSMUSG00000010608	Rbm25	100	99.051	ENSSARG00000002327	RBM25	100	99.051	Sorex_araneus
ENSMUSG00000010608	Rbm25	99	94.330	ENSSPUG00000000970	-	99	88.660	Sphenodon_punctatus
ENSMUSG00000010608	Rbm25	100	98.974	ENSSSCG00000039876	RBM25	100	98.833	Sus_scrofa
ENSMUSG00000010608	Rbm25	99	96.752	ENSTGUG00000011246	-	70	96.752	Taeniopygia_guttata
ENSMUSG00000010608	Rbm25	94	73.224	ENSTRUG00000017964	rbm25b	52	77.724	Takifugu_rubripes
ENSMUSG00000010608	Rbm25	90	65.375	ENSTNIG00000012222	rbm25b	66	77.590	Tetraodon_nigroviridis
ENSMUSG00000010608	Rbm25	67	98.485	ENSTBEG00000010538	-	67	98.485	Tupaia_belangeri
ENSMUSG00000010608	Rbm25	80	98.726	ENSUAMG00000007707	RBM25	100	99.365	Ursus_americanus
ENSMUSG00000010608	Rbm25	100	94.872	ENSVPAG00000009052	RBM25	100	92.527	Vicugna_pacos
ENSMUSG00000010608	Rbm25	100	99.051	ENSVVUG00000004426	RBM25	98	99.051	Vulpes_vulpes
ENSMUSG00000010608	Rbm25	95	72.807	ENSXETG00000021857	rbm25	53	87.654	Xenopus_tropicalis
ENSMUSG00000010608	Rbm25	93	75.824	ENSXCOG00000002222	rbm25b	52	72.705	Xiphophorus_couchianus
ENSMUSG00000010608	Rbm25	98	73.469	ENSXCOG00000004043	RBM25	53	78.469	Xiphophorus_couchianus
ENSMUSG00000010608	Rbm25	99	73.196	ENSXMAG00000009077	RBM25	51	74.402	Xiphophorus_maculatus
ENSMUSG00000010608	Rbm25	95	74.194	ENSXMAG00000017290	rbm25b	52	72.488	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006915	apoptotic process	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process