EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000012535 (Gene tree)
Gene ID: 320938
Gene Symbol: Tnpo3
Alias: 5730544L10Rik|C430013M08Rik|D6Ertd313e
Full Name: transportin 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 69061 bases
Position: chr6:29540827-29609887
Accession: 1196412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000110906	Xpo1	PF08389.12	4e-28	1	1
ENSMUSP00000012679	Xpo1	PF08389.12	4.5e-28	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000170350	-	3590	-	ENSMUSP00000131411	42 (aa)	-	E9Q0H8
ENSMUST00000012679	-	4251	XM_017321650	ENSMUSP00000012679	923 (aa)	-	Q6P2B1
ENSMUST00000169302	-	2615	-	-	- (aa)	-	-
ENSMUST00000201797	-	3086	-	-	- (aa)	-	-
ENSMUST00000115251	-	3989	XM_006505119	ENSMUSP00000110906	929 (aa)	XP_006505182	Q6P2B1
ENSMUST00000170647	-	1664	-	ENSMUSP00000133115	247 (aa)	-	F6TDZ2
ENSMUST00000166844	-	456	-	-	- (aa)	-	-
ENSMUST00000171865	-	515	-	-	- (aa)	-	-
ENSMUST00000167056	-	447	-	-	- (aa)	-	-
ENSMUST00000170634	-	3143	-	-	- (aa)	-	-
ENSMUST00000164325	-	3396	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000012535's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000012535's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000012535	Tnpo3	100	99.350	ENSG00000064419	TNPO3	100	99.350	Homo_sapiens
ENSMUSG00000012535	Tnpo3	100	86.349	ENSAPOG00000018347	tnpo3	100	86.349	Acanthochromis_polyacanthus
ENSMUSG00000012535	Tnpo3	99	95.903	ENSAMEG00000005135	TNPO3	98	95.903	Ailuropoda_melanoleuca
ENSMUSG00000012535	Tnpo3	96	83.918	ENSACIG00000005897	tnpo3	99	83.918	Amphilophus_citrinellus
ENSMUSG00000012535	Tnpo3	100	86.457	ENSAOCG00000008264	tnpo3	100	86.457	Amphiprion_ocellaris
ENSMUSG00000012535	Tnpo3	96	86.410	ENSAPEG00000024300	tnpo3	100	86.410	Amphiprion_percula
ENSMUSG00000012535	Tnpo3	100	85.482	ENSATEG00000003197	tnpo3	100	85.482	Anabas_testudineus
ENSMUSG00000012535	Tnpo3	72	92.453	ENSAPLG00000005946	TNPO3	91	92.453	Anas_platyrhynchos
ENSMUSG00000012535	Tnpo3	82	92.641	ENSACAG00000013470	TNPO3	95	92.641	Anolis_carolinensis
ENSMUSG00000012535	Tnpo3	100	99.133	ENSANAG00000037940	TNPO3	100	99.133	Aotus_nancymaae
ENSMUSG00000012535	Tnpo3	100	85.699	ENSACLG00000005561	tnpo3	100	85.699	Astatotilapia_calliptera
ENSMUSG00000012535	Tnpo3	100	85.915	ENSAMXG00000016236	tnpo3	100	85.915	Astyanax_mexicanus
ENSMUSG00000012535	Tnpo3	100	98.700	ENSBTAG00000004992	TNPO3	100	98.700	Bos_taurus
ENSMUSG00000012535	Tnpo3	100	99.350	ENSCJAG00000018085	TNPO3	100	99.350	Callithrix_jacchus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSCAFG00000001543	TNPO3	100	99.458	Canis_familiaris
ENSMUSG00000012535	Tnpo3	100	99.458	ENSCAFG00020022462	TNPO3	99	99.027	Canis_lupus_dingo
ENSMUSG00000012535	Tnpo3	100	98.700	ENSCHIG00000011721	TNPO3	100	98.700	Capra_hircus
ENSMUSG00000012535	Tnpo3	100	99.242	ENSTSYG00000002989	TNPO3	100	99.242	Carlito_syrichta
ENSMUSG00000012535	Tnpo3	71	97.849	ENSCAPG00000005843	TNPO3	91	97.849	Cavia_aperea
ENSMUSG00000012535	Tnpo3	100	98.808	ENSCPOG00000039784	TNPO3	100	98.808	Cavia_porcellus
ENSMUSG00000012535	Tnpo3	100	99.242	ENSCCAG00000033826	TNPO3	100	99.242	Cebus_capucinus
ENSMUSG00000012535	Tnpo3	100	99.350	ENSCATG00000030018	TNPO3	100	99.350	Cercocebus_atys
ENSMUSG00000012535	Tnpo3	100	98.382	ENSCLAG00000016298	TNPO3	100	98.382	Chinchilla_lanigera
ENSMUSG00000012535	Tnpo3	100	99.242	ENSCSAG00000009966	TNPO3	100	99.242	Chlorocebus_sabaeus
ENSMUSG00000012535	Tnpo3	93	96.154	ENSCHOG00000011547	TNPO3	93	96.154	Choloepus_hoffmanni
ENSMUSG00000012535	Tnpo3	93	94.516	ENSCPBG00000017497	TNPO3	100	94.516	Chrysemys_picta_bellii
ENSMUSG00000012535	Tnpo3	99	48.911	ENSCING00000005042	-	99	48.911	Ciona_intestinalis
ENSMUSG00000012535	Tnpo3	99	47.110	ENSCSAVG00000008623	-	94	54.182	Ciona_savignyi
ENSMUSG00000012535	Tnpo3	100	99.350	ENSCANG00000033070	TNPO3	100	99.350	Colobus_angolensis_palliatus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSCGRG00001015925	Tnpo3	100	99.458	Cricetulus_griseus_chok1gshd
ENSMUSG00000012535	Tnpo3	100	99.458	ENSCGRG00000010379	Tnpo3	100	99.458	Cricetulus_griseus_crigri
ENSMUSG00000012535	Tnpo3	100	84.724	ENSCSEG00000005952	tnpo3	100	84.724	Cynoglossus_semilaevis
ENSMUSG00000012535	Tnpo3	100	85.482	ENSCVAG00000020285	tnpo3	100	85.482	Cyprinodon_variegatus
ENSMUSG00000012535	Tnpo3	100	85.590	ENSDARG00000045680	tnpo3	100	85.590	Danio_rerio
ENSMUSG00000012535	Tnpo3	100	99.350	ENSDNOG00000002556	TNPO3	100	99.350	Dasypus_novemcinctus
ENSMUSG00000012535	Tnpo3	62	97.064	ENSDORG00000002433	Tnpo3	95	97.064	Dipodomys_ordii
ENSMUSG00000012535	Tnpo3	99	42.626	FBgn0031456	Tnpo-SR	99	42.626	Drosophila_melanogaster
ENSMUSG00000012535	Tnpo3	95	99.341	ENSETEG00000002101	TNPO3	90	99.341	Echinops_telfairi
ENSMUSG00000012535	Tnpo3	100	71.181	ENSEBUG00000016931	tnpo3	100	71.181	Eptatretus_burgeri
ENSMUSG00000012535	Tnpo3	100	99.242	ENSEASG00005008677	TNPO3	100	99.242	Equus_asinus_asinus
ENSMUSG00000012535	Tnpo3	100	99.242	ENSECAG00000012815	TNPO3	100	99.242	Equus_caballus
ENSMUSG00000012535	Tnpo3	61	32.701	ENSEEUG00000011681	IPO13	73	30.493	Erinaceus_europaeus
ENSMUSG00000012535	Tnpo3	99	93.191	ENSEEUG00000005178	TNPO3	98	93.191	Erinaceus_europaeus
ENSMUSG00000012535	Tnpo3	99	86.616	ENSELUG00000012153	tnpo3	99	86.616	Esox_lucius
ENSMUSG00000012535	Tnpo3	100	99.458	ENSFCAG00000018186	TNPO3	100	99.458	Felis_catus
ENSMUSG00000012535	Tnpo3	96	89.409	ENSFALG00000010667	TNPO3	100	89.409	Ficedula_albicollis
ENSMUSG00000012535	Tnpo3	100	98.703	ENSFDAG00000019578	TNPO3	100	98.703	Fukomys_damarensis
ENSMUSG00000012535	Tnpo3	100	85.590	ENSFHEG00000012859	tnpo3	100	85.590	Fundulus_heteroclitus
ENSMUSG00000012535	Tnpo3	100	85.374	ENSGMOG00000007324	tnpo3	100	85.374	Gadus_morhua
ENSMUSG00000012535	Tnpo3	61	94.128	ENSGALG00000039420	TNPO3	98	94.128	Gallus_gallus
ENSMUSG00000012535	Tnpo3	100	85.590	ENSGACG00000000699	tnpo3	100	85.590	Gasterosteus_aculeatus
ENSMUSG00000012535	Tnpo3	93	94.399	ENSGAGG00000006777	TNPO3	100	94.399	Gopherus_agassizii
ENSMUSG00000012535	Tnpo3	100	99.350	ENSGGOG00000008339	TNPO3	100	99.350	Gorilla_gorilla
ENSMUSG00000012535	Tnpo3	100	85.699	ENSHBUG00000008351	tnpo3	100	85.699	Haplochromis_burtoni
ENSMUSG00000012535	Tnpo3	100	99.242	ENSHGLG00000004463	TNPO3	100	99.242	Heterocephalus_glaber_female
ENSMUSG00000012535	Tnpo3	100	99.242	ENSHGLG00100005509	TNPO3	100	99.242	Heterocephalus_glaber_male
ENSMUSG00000012535	Tnpo3	100	84.940	ENSHCOG00000007221	tnpo3	100	84.940	Hippocampus_comes
ENSMUSG00000012535	Tnpo3	100	84.832	ENSIPUG00000014979	TNPO3	99	84.832	Ictalurus_punctatus
ENSMUSG00000012535	Tnpo3	100	99.350	ENSSTOG00000004885	TNPO3	100	99.350	Ictidomys_tridecemlineatus
ENSMUSG00000012535	Tnpo3	100	91.909	ENSJJAG00000013530	Tnpo3	100	91.909	Jaculus_jaculus
ENSMUSG00000012535	Tnpo3	100	85.807	ENSKMAG00000010497	tnpo3	100	85.807	Kryptolebias_marmoratus
ENSMUSG00000012535	Tnpo3	96	81.653	ENSLBEG00000011988	-	99	81.653	Labrus_bergylta
ENSMUSG00000012535	Tnpo3	96	84.258	ENSLBEG00000016595	tnpo3	100	84.258	Labrus_bergylta
ENSMUSG00000012535	Tnpo3	84	90.270	ENSLACG00000002351	TNPO3	99	90.270	Latimeria_chalumnae
ENSMUSG00000012535	Tnpo3	100	87.432	ENSLOCG00000015556	tnpo3	100	87.432	Lepisosteus_oculatus
ENSMUSG00000012535	Tnpo3	100	98.708	ENSLAFG00000002738	TNPO3	100	98.708	Loxodonta_africana
ENSMUSG00000012535	Tnpo3	100	99.350	ENSMFAG00000032385	TNPO3	100	99.350	Macaca_fascicularis
ENSMUSG00000012535	Tnpo3	100	99.350	ENSMMUG00000004311	TNPO3	100	99.350	Macaca_mulatta
ENSMUSG00000012535	Tnpo3	100	99.350	ENSMNEG00000045277	TNPO3	100	99.350	Macaca_nemestrina
ENSMUSG00000012535	Tnpo3	100	99.350	ENSMLEG00000037881	TNPO3	100	99.350	Mandrillus_leucophaeus
ENSMUSG00000012535	Tnpo3	100	86.024	ENSMAMG00000021096	tnpo3	100	86.024	Mastacembelus_armatus
ENSMUSG00000012535	Tnpo3	100	85.699	ENSMZEG00005015084	tnpo3	100	85.699	Maylandia_zebra
ENSMUSG00000012535	Tnpo3	78	89.103	ENSMGAG00000002839	TNPO3	99	89.103	Meleagris_gallopavo
ENSMUSG00000012535	Tnpo3	100	99.350	ENSMAUG00000013463	Tnpo3	100	99.350	Mesocricetus_auratus
ENSMUSG00000012535	Tnpo3	68	35.659	ENSMICG00000011003	IPO13	77	33.136	Microcebus_murinus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSMICG00000000140	TNPO3	100	99.458	Microcebus_murinus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSMOCG00000013264	Tnpo3	100	99.458	Microtus_ochrogaster
ENSMUSG00000012535	Tnpo3	100	85.157	ENSMMOG00000005887	tnpo3	100	85.157	Mola_mola
ENSMUSG00000012535	Tnpo3	100	97.400	ENSMODG00000014700	TNPO3	100	97.400	Monodelphis_domestica
ENSMUSG00000012535	Tnpo3	100	85.482	ENSMALG00000006675	tnpo3	100	85.482	Monopterus_albus
ENSMUSG00000012535	Tnpo3	100	100.000	MGP_CAROLIEiJ_G0028176	Tnpo3	100	100.000	Mus_caroli
ENSMUSG00000012535	Tnpo3	100	99.892	MGP_PahariEiJ_G0021934	Tnpo3	100	99.892	Mus_pahari
ENSMUSG00000012535	Tnpo3	100	99.892	MGP_SPRETEiJ_G0029176	Tnpo3	100	99.892	Mus_spretus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSMPUG00000006021	TNPO3	100	99.458	Mustela_putorius_furo
ENSMUSG00000012535	Tnpo3	100	88.949	ENSMLUG00000000947	TNPO3	100	88.949	Myotis_lucifugus
ENSMUSG00000012535	Tnpo3	100	99.567	ENSNGAG00000008722	Tnpo3	100	99.567	Nannospalax_galili
ENSMUSG00000012535	Tnpo3	100	84.074	ENSNBRG00000019001	tnpo3	100	85.344	Neolamprologus_brichardi
ENSMUSG00000012535	Tnpo3	100	95.611	ENSNLEG00000012491	TNPO3	100	95.611	Nomascus_leucogenys
ENSMUSG00000012535	Tnpo3	92	80.551	ENSMEUG00000002445	TNPO3	91	80.551	Notamacropus_eugenii
ENSMUSG00000012535	Tnpo3	91	99.457	ENSOPRG00000006163	TNPO3	90	99.457	Ochotona_princeps
ENSMUSG00000012535	Tnpo3	98	98.891	ENSODEG00000012826	TNPO3	100	98.891	Octodon_degus
ENSMUSG00000012535	Tnpo3	100	85.915	ENSONIG00000007604	tnpo3	100	85.915	Oreochromis_niloticus
ENSMUSG00000012535	Tnpo3	95	92.942	ENSOANG00000011451	TNPO3	100	92.942	Ornithorhynchus_anatinus
ENSMUSG00000012535	Tnpo3	99	95.483	ENSOCUG00000010105	TNPO3	99	95.483	Oryctolagus_cuniculus
ENSMUSG00000012535	Tnpo3	100	84.724	ENSORLG00000029369	tnpo3	100	84.724	Oryzias_latipes
ENSMUSG00000012535	Tnpo3	100	84.724	ENSORLG00020003464	tnpo3	100	84.724	Oryzias_latipes_hni
ENSMUSG00000012535	Tnpo3	100	84.832	ENSORLG00015002610	tnpo3	100	84.832	Oryzias_latipes_hsok
ENSMUSG00000012535	Tnpo3	100	84.940	ENSOMEG00000021006	tnpo3	100	84.940	Oryzias_melastigma
ENSMUSG00000012535	Tnpo3	100	99.242	ENSOGAG00000015340	TNPO3	100	99.242	Otolemur_garnettii
ENSMUSG00000012535	Tnpo3	100	98.483	ENSOARG00000004026	TNPO3	100	98.483	Ovis_aries
ENSMUSG00000012535	Tnpo3	100	99.350	ENSPPAG00000034975	TNPO3	100	99.350	Pan_paniscus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSPPRG00000002050	TNPO3	100	99.458	Panthera_pardus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSPTIG00000016167	TNPO3	100	99.458	Panthera_tigris_altaica
ENSMUSG00000012535	Tnpo3	100	99.350	ENSPTRG00000019676	TNPO3	100	99.350	Pan_troglodytes
ENSMUSG00000012535	Tnpo3	98	99.227	ENSPANG00000022226	TNPO3	99	99.227	Papio_anubis
ENSMUSG00000012535	Tnpo3	100	80.562	ENSPKIG00000008628	-	100	80.562	Paramormyrops_kingsleyae
ENSMUSG00000012535	Tnpo3	100	83.424	ENSPKIG00000023234	tnpo3	100	83.424	Paramormyrops_kingsleyae
ENSMUSG00000012535	Tnpo3	62	79.577	ENSPMGG00000009763	tnpo3	99	79.577	Periophthalmus_magnuspinnatus
ENSMUSG00000012535	Tnpo3	100	99.350	ENSPEMG00000000422	Tnpo3	100	99.350	Peromyscus_maniculatus_bairdii
ENSMUSG00000012535	Tnpo3	95	72.707	ENSPMAG00000008621	tnpo3	100	72.707	Petromyzon_marinus
ENSMUSG00000012535	Tnpo3	100	96.858	ENSPCIG00000011366	TNPO3	100	96.858	Phascolarctos_cinereus
ENSMUSG00000012535	Tnpo3	100	85.265	ENSPFOG00000013592	tnpo3	99	85.265	Poecilia_formosa
ENSMUSG00000012535	Tnpo3	100	85.265	ENSPLAG00000010188	tnpo3	100	85.265	Poecilia_latipinna
ENSMUSG00000012535	Tnpo3	100	85.374	ENSPMEG00000022731	tnpo3	100	85.374	Poecilia_mexicana
ENSMUSG00000012535	Tnpo3	100	99.350	ENSPPYG00000017990	TNPO3	100	99.350	Pongo_abelii
ENSMUSG00000012535	Tnpo3	99	88.143	ENSPCAG00000010158	TNPO3	98	88.143	Procavia_capensis
ENSMUSG00000012535	Tnpo3	88	99.342	ENSPCOG00000023901	TNPO3	97	99.342	Propithecus_coquereli
ENSMUSG00000012535	Tnpo3	99	92.332	ENSPVAG00000015757	TNPO3	98	92.332	Pteropus_vampyrus
ENSMUSG00000012535	Tnpo3	100	85.699	ENSPNYG00000002349	tnpo3	100	85.699	Pundamilia_nyererei
ENSMUSG00000012535	Tnpo3	100	86.674	ENSPNAG00000001142	tnpo3	100	86.674	Pygocentrus_nattereri
ENSMUSG00000012535	Tnpo3	100	99.783	ENSRNOG00000021758	Tnpo3	100	99.783	Rattus_norvegicus
ENSMUSG00000012535	Tnpo3	100	99.242	ENSRBIG00000042549	TNPO3	100	99.242	Rhinopithecus_bieti
ENSMUSG00000012535	Tnpo3	100	99.242	ENSRROG00000039264	TNPO3	100	99.242	Rhinopithecus_roxellana
ENSMUSG00000012535	Tnpo3	94	95.082	ENSSBOG00000029642	TNPO3	100	95.082	Saimiri_boliviensis_boliviensis
ENSMUSG00000012535	Tnpo3	96	97.622	ENSSHAG00000006837	TNPO3	100	97.622	Sarcophilus_harrisii
ENSMUSG00000012535	Tnpo3	100	80.769	ENSSFOG00015004256	tnpo3	100	80.769	Scleropages_formosus
ENSMUSG00000012535	Tnpo3	100	84.507	ENSSFOG00015001474	tnpo3	100	84.507	Scleropages_formosus
ENSMUSG00000012535	Tnpo3	100	86.024	ENSSMAG00000010422	tnpo3	97	86.024	Scophthalmus_maximus
ENSMUSG00000012535	Tnpo3	100	86.457	ENSSDUG00000004850	tnpo3	100	86.457	Seriola_dumerili
ENSMUSG00000012535	Tnpo3	100	86.457	ENSSLDG00000016927	tnpo3	100	86.457	Seriola_lalandi_dorsalis
ENSMUSG00000012535	Tnpo3	95	85.919	ENSSARG00000013893	TNPO3	98	85.919	Sorex_araneus
ENSMUSG00000012535	Tnpo3	99	87.446	ENSSPUG00000007457	TNPO3	99	87.365	Sphenodon_punctatus
ENSMUSG00000012535	Tnpo3	79	87.466	ENSSPAG00000014209	tnpo3	99	87.466	Stegastes_partitus
ENSMUSG00000012535	Tnpo3	100	99.350	ENSSSCG00000016572	TNPO3	100	99.417	Sus_scrofa
ENSMUSG00000012535	Tnpo3	100	83.801	ENSTNIG00000003347	tnpo3	100	83.801	Tetraodon_nigroviridis
ENSMUSG00000012535	Tnpo3	88	99.353	ENSTBEG00000007220	TNPO3	90	99.353	Tupaia_belangeri
ENSMUSG00000012535	Tnpo3	93	100.000	ENSTTRG00000014618	TNPO3	93	100.000	Tursiops_truncatus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSUAMG00000021281	TNPO3	100	99.458	Ursus_americanus
ENSMUSG00000012535	Tnpo3	100	99.458	ENSUMAG00000006882	TNPO3	100	99.458	Ursus_maritimus
ENSMUSG00000012535	Tnpo3	85	83.922	ENSVPAG00000006166	TNPO3	88	83.922	Vicugna_pacos
ENSMUSG00000012535	Tnpo3	100	99.458	ENSVVUG00000011004	TNPO3	100	99.323	Vulpes_vulpes
ENSMUSG00000012535	Tnpo3	100	82.505	ENSXETG00000015009	tnpo3	100	82.505	Xenopus_tropicalis
ENSMUSG00000012535	Tnpo3	100	85.049	ENSXMAG00000013062	tnpo3	100	85.049	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0006606	protein import into nucleus	-	ISO	Process
GO:0008565	protein transporter activity	21873635.	IBA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component