EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000013415 (Gene tree)
Gene ID: 140486
Gene Symbol: Igf2bp1
Alias: CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Zbp1
Full Name: insulin-like growth factor 2 mRNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 48778 bases
Position: chr11:95957163-96005940
Accession: 1890357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000013559	KH_1	PF00013.29	6.2e-56	1	4
ENSMUSP00000013559	KH_1	PF00013.29	6.2e-56	2	4
ENSMUSP00000013559	KH_1	PF00013.29	6.2e-56	3	4
ENSMUSP00000013559	KH_1	PF00013.29	6.2e-56	4	4
ENSMUSP00000013559	RRM_1	PF00076.22	2.6e-16	1	2
ENSMUSP00000013559	RRM_1	PF00076.22	2.6e-16	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000013559	-	8378	-	ENSMUSP00000013559	577 (aa)	-	O88477
ENSMUST00000146586	-	599	-	-	- (aa)	-	-
ENSMUST00000138513	-	690	-	-	- (aa)	-	-
ENSMUST00000141515	-	1108	-	-	- (aa)	-	-
ENSMUST00000152896	-	576	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000013415's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05206	MicroRNAs in cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000013415's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000013415	Igf2bp1	59	30.597	ENSMUSG00000023495	Pcbp4	87	31.061
ENSMUSG00000013415	Igf2bp1	62	32.353	ENSMUSG00000056851	Pcbp2	95	32.353
ENSMUSG00000013415	Igf2bp1	60	33.333	ENSMUSG00000001120	Pcbp3	66	33.582
ENSMUSG00000013415	Igf2bp1	100	64.677	ENSMUSG00000033581	Igf2bp2	100	65.047
ENSMUSG00000013415	Igf2bp1	100	72.727	ENSMUSG00000029814	Igf2bp3	100	72.727

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSG00000159217	IGF2BP1	100	100.000	Homo_sapiens
ENSMUSG00000013415	Igf2bp1	100	98.614	ENSAMEG00000005087	IGF2BP1	97	98.614	Ailuropoda_melanoleuca
ENSMUSG00000013415	Igf2bp1	90	94.434	ENSAPLG00000012620	IGF2BP1	100	94.434	Anas_platyrhynchos
ENSMUSG00000013415	Igf2bp1	100	94.107	ENSACAG00000006199	IGF2BP1	100	94.107	Anolis_carolinensis
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSANAG00000022606	IGF2BP1	100	100.000	Aotus_nancymaae
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSBTAG00000011736	IGF2BP1	100	99.133	Bos_taurus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSCJAG00000007258	IGF2BP1	100	100.000	Callithrix_jacchus
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSCAFG00000016907	IGF2BP1	100	99.133	Canis_familiaris
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSCAFG00020023369	IGF2BP1	100	99.133	Canis_lupus_dingo
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSCHIG00000022316	IGF2BP1	100	99.133	Capra_hircus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSTSYG00000003912	IGF2BP1	100	100.000	Carlito_syrichta
ENSMUSG00000013415	Igf2bp1	76	97.959	ENSCAPG00000008985	IGF2BP1	100	97.959	Cavia_aperea
ENSMUSG00000013415	Igf2bp1	95	98.172	ENSCPOG00000020174	IGF2BP1	100	98.172	Cavia_porcellus
ENSMUSG00000013415	Igf2bp1	100	96.014	ENSCCAG00000031817	IGF2BP1	100	96.014	Cebus_capucinus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSCATG00000041707	IGF2BP1	100	100.000	Cercocebus_atys
ENSMUSG00000013415	Igf2bp1	100	97.747	ENSCLAG00000015853	IGF2BP1	100	97.747	Chinchilla_lanigera
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSCSAG00000002487	IGF2BP1	100	99.307	Chlorocebus_sabaeus
ENSMUSG00000013415	Igf2bp1	84	80.705	ENSCHOG00000002349	IGF2BP1	100	80.705	Choloepus_hoffmanni
ENSMUSG00000013415	Igf2bp1	100	84.575	ENSCPBG00000027315	IGF2BP1	100	84.229	Chrysemys_picta_bellii
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSCANG00000032567	IGF2BP1	100	100.000	Colobus_angolensis_palliatus
ENSMUSG00000013415	Igf2bp1	90	88.654	ENSCGRG00001006706	-	97	84.964	Cricetulus_griseus_chok1gshd
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSCGRG00001000282	-	100	99.307	Cricetulus_griseus_chok1gshd
ENSMUSG00000013415	Igf2bp1	76	84.354	ENSCGRG00001003571	-	100	86.621	Cricetulus_griseus_chok1gshd
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSCGRG00000014555	Igf2bp1	100	99.307	Cricetulus_griseus_crigri
ENSMUSG00000013415	Igf2bp1	100	96.014	ENSDNOG00000006801	IGF2BP1	100	96.014	Dasypus_novemcinctus
ENSMUSG00000013415	Igf2bp1	100	90.815	ENSDORG00000014371	Igf2bp1	100	90.815	Dipodomys_ordii
ENSMUSG00000013415	Igf2bp1	90	80.116	ENSETEG00000003370	IGF2BP1	100	79.151	Echinops_telfairi
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSEASG00005000301	IGF2BP1	100	98.960	Equus_asinus_asinus
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSECAG00000009723	IGF2BP1	100	98.960	Equus_caballus
ENSMUSG00000013415	Igf2bp1	100	84.922	ENSEEUG00000010947	IGF2BP1	100	84.922	Erinaceus_europaeus
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSFCAG00000002454	IGF2BP1	100	100.000	Felis_catus
ENSMUSG00000013415	Igf2bp1	87	61.404	ENSFALG00000011366	IGF2BP1	100	62.406	Ficedula_albicollis
ENSMUSG00000013415	Igf2bp1	97	93.506	ENSFDAG00000017420	IGF2BP1	100	93.506	Fukomys_damarensis
ENSMUSG00000013415	Igf2bp1	100	94.454	ENSGALG00000041204	IGF2BP1	100	94.454	Gallus_gallus
ENSMUSG00000013415	Igf2bp1	76	85.235	ENSGAGG00000021663	IGF2BP1	100	85.235	Gopherus_agassizii
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSGGOG00000008872	IGF2BP1	100	100.000	Gorilla_gorilla
ENSMUSG00000013415	Igf2bp1	100	98.267	ENSHGLG00000010492	IGF2BP1	100	98.267	Heterocephalus_glaber_female
ENSMUSG00000013415	Igf2bp1	100	98.267	ENSHGLG00100006606	IGF2BP1	100	98.267	Heterocephalus_glaber_male
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSSTOG00000010643	IGF2BP1	100	99.133	Ictidomys_tridecemlineatus
ENSMUSG00000013415	Igf2bp1	100	98.267	ENSJJAG00000002687	Igf2bp1	100	98.267	Jaculus_jaculus
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSLAFG00000002048	IGF2BP1	100	98.960	Loxodonta_africana
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSMFAG00000001613	IGF2BP1	100	100.000	Macaca_fascicularis
ENSMUSG00000013415	Igf2bp1	86	100.000	ENSMMUG00000011533	IGF2BP1	100	100.000	Macaca_mulatta
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSMNEG00000033825	IGF2BP1	100	100.000	Macaca_nemestrina
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSMLEG00000026086	IGF2BP1	100	100.000	Mandrillus_leucophaeus
ENSMUSG00000013415	Igf2bp1	81	95.054	ENSMGAG00000002497	IGF2BP1	100	95.054	Meleagris_gallopavo
ENSMUSG00000013415	Igf2bp1	77	80.180	ENSMICG00000043511	-	99	80.180	Microcebus_murinus
ENSMUSG00000013415	Igf2bp1	100	92.548	ENSMICG00000013324	-	100	99.259	Microcebus_murinus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSMOCG00000010232	Igf2bp1	100	99.307	Microtus_ochrogaster
ENSMUSG00000013415	Igf2bp1	100	97.227	ENSMODG00000012268	IGF2BP1	100	97.227	Monodelphis_domestica
ENSMUSG00000013415	Igf2bp1	100	100.000	MGP_CAROLIEiJ_G0017016	Igf2bp1	100	100.000	Mus_caroli
ENSMUSG00000013415	Igf2bp1	100	100.000	MGP_SPRETEiJ_G0017862	Igf2bp1	100	100.000	Mus_spretus
ENSMUSG00000013415	Igf2bp1	87	94.071	ENSMPUG00000015358	IGF2BP1	100	94.071	Mustela_putorius_furo
ENSMUSG00000013415	Igf2bp1	83	73.542	ENSMLUG00000023642	-	100	73.542	Myotis_lucifugus
ENSMUSG00000013415	Igf2bp1	71	95.086	ENSMLUG00000016891	-	100	95.086	Myotis_lucifugus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSNGAG00000015679	Igf2bp1	100	99.307	Nannospalax_galili
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSNLEG00000002786	IGF2BP1	100	100.000	Nomascus_leucogenys
ENSMUSG00000013415	Igf2bp1	79	98.404	ENSMEUG00000002152	-	84	98.404	Notamacropus_eugenii
ENSMUSG00000013415	Igf2bp1	90	94.208	ENSOPRG00000010207	IGF2BP1	100	94.208	Ochotona_princeps
ENSMUSG00000013415	Igf2bp1	100	98.614	ENSODEG00000016991	-	100	98.614	Octodon_degus
ENSMUSG00000013415	Igf2bp1	86	78.958	ENSODEG00000014533	-	92	78.958	Octodon_degus
ENSMUSG00000013415	Igf2bp1	63	82.920	ENSOANG00000014859	-	100	82.920	Ornithorhynchus_anatinus
ENSMUSG00000013415	Igf2bp1	99	98.772	ENSOCUG00000004411	IGF2BP1	100	98.772	Oryctolagus_cuniculus
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSOGAG00000001270	IGF2BP1	100	98.960	Otolemur_garnettii
ENSMUSG00000013415	Igf2bp1	100	98.787	ENSOARG00000006509	IGF2BP1	100	98.787	Ovis_aries
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSPPAG00000040224	IGF2BP1	100	99.259	Pan_paniscus
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSPPRG00000008067	IGF2BP1	100	100.000	Panthera_pardus
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSPTIG00000013291	IGF2BP1	100	100.000	Panthera_tigris_altaica
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSPTRG00000009368	IGF2BP1	100	99.259	Pan_troglodytes
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSPANG00000022833	IGF2BP1	100	100.000	Papio_anubis
ENSMUSG00000013415	Igf2bp1	86	81.873	ENSPSIG00000005175	IGF2BP1	100	81.873	Pelodiscus_sinensis
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSPEMG00000021974	Igf2bp1	100	98.960	Peromyscus_maniculatus_bairdii
ENSMUSG00000013415	Igf2bp1	100	97.227	ENSPCIG00000013111	IGF2BP1	100	97.227	Phascolarctos_cinereus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSPPYG00000008913	IGF2BP1	100	99.307	Pongo_abelii
ENSMUSG00000013415	Igf2bp1	100	90.468	ENSPCAG00000016601	IGF2BP1	100	90.468	Procavia_capensis
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSPCOG00000006475	IGF2BP1	100	99.259	Propithecus_coquereli
ENSMUSG00000013415	Igf2bp1	100	79.066	ENSPVAG00000001718	IGF2BP1	100	79.066	Pteropus_vampyrus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSRNOG00000006122	Igf2bp1	100	99.307	Rattus_norvegicus
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSRBIG00000035739	IGF2BP1	100	100.000	Rhinopithecus_bieti
ENSMUSG00000013415	Igf2bp1	100	99.307	ENSRROG00000039581	IGF2BP1	100	100.000	Rhinopithecus_roxellana
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSSBOG00000020973	IGF2BP1	100	99.259	Saimiri_boliviensis_boliviensis
ENSMUSG00000013415	Igf2bp1	100	97.054	ENSSHAG00000014259	IGF2BP1	100	97.054	Sarcophilus_harrisii
ENSMUSG00000013415	Igf2bp1	66	90.461	ENSSARG00000013201	-	73	90.461	Sorex_araneus
ENSMUSG00000013415	Igf2bp1	100	91.869	ENSSPUG00000006526	IGF2BP1	100	91.869	Sphenodon_punctatus
ENSMUSG00000013415	Igf2bp1	100	67.647	ENSSSCG00000001827	-	100	67.647	Sus_scrofa
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSSSCG00000023128	-	100	98.960	Sus_scrofa
ENSMUSG00000013415	Igf2bp1	100	80.069	ENSTBEG00000004254	IGF2BP1	100	80.069	Tupaia_belangeri
ENSMUSG00000013415	Igf2bp1	100	95.667	ENSTTRG00000007197	IGF2BP1	100	95.667	Tursiops_truncatus
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSUAMG00000023269	IGF2BP1	100	99.133	Ursus_americanus
ENSMUSG00000013415	Igf2bp1	100	98.960	ENSUMAG00000015682	IGF2BP1	100	98.960	Ursus_maritimus
ENSMUSG00000013415	Igf2bp1	78	87.832	ENSVPAG00000007657	IGF2BP1	83	87.832	Vicugna_pacos
ENSMUSG00000013415	Igf2bp1	100	99.133	ENSVVUG00000003451	IGF2BP1	100	99.133	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006403	RNA localization	-	ISO	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0010610	regulation of mRNA stability involved in response to stress	-	ISO	Process
GO:0017148	negative regulation of translation	-	ISO	Process
GO:0022013	pallium cell proliferation in forebrain	24192035.	IMP	Process
GO:0030425	dendrite	-	ISO	Component
GO:0042995	cell projection	-	IEA	Component
GO:0045182	translation regulator activity	-	ISO	Function
GO:0048027	mRNA 5'-UTR binding	-	ISO	Function
GO:0051028	mRNA transport	-	IEA	Process
GO:0070934	CRD-mediated mRNA stabilization	-	ISO	Process
GO:0070937	CRD-mediated mRNA stability complex	-	ISO	Component
GO:0097150	neuronal stem cell population maintenance	24192035.	IMP	Process
GO:1990904	ribonucleoprotein complex	-	ISO	Component