EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000015092 (Gene tree)
Gene ID: 59022
Gene Symbol: Edf1
Alias: 0610008L11Rik|hypothetical protein 1-9
Full Name: endothelial differentiation-related factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 4236
Position: chr2: 25557847-25562082
Accession: 1891227
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000015236	-	722	XM_006498208	ENSMUSP00000015236	148 (aa)	-	Q9JMG1
ENSMUST00000134689	-	910	-	-	- (aa)	-	-
ENSMUST00000153008	-	765	-	-	- (aa)	-	-
ENSMUST00000144395	-	346	-	-	- (aa)	-	-
ENSMUST00000142288	-	710	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000015092's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000015092's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000015092	Edf1	99	82.877	ENSDARG00000009950	edf1	99	82.877	Danio_rerio
ENSMUSG00000015092	Edf1	93	65.217	FBgn0262732	mbf1	95	65.217	Drosophila_melanogaster
ENSMUSG00000015092	Edf1	100	98.649	ENSG00000107223	EDF1	100	98.649	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001094	TFIID-class transcription factor complex binding	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0005516	calmodulin binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0007275	multicellular organism development	-	IEA	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0043388	positive regulation of DNA binding	-	ISO	Process
GO:0043565	sequence-specific DNA binding	-	IEA	Function