EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000015143 (Gene tree)
Gene ID: 109711
Gene Symbol: Actn1
Alias: 3110023F10Rik
Full Name: actinin%2C alpha 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 92825
Position: chr12: 80167547-80260371
Accession: 2137706
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000220351	-	505	-	-	- (aa)	-	-
ENSMUST00000021554	-	3734	XM_006515384	ENSMUSP00000021554	892 (aa)	XP_006515447	Q7TPR4
ENSMUST00000219634	-	1034	-	-	- (aa)	-	-
ENSMUST00000217984	-	449	-	-	- (aa)	-	-
ENSMUST00000167327	-	2664	XM_006515386	ENSMUSP00000127176	887 (aa)	XP_006515449	A1BN54
ENSMUST00000219382	-	1410	-	-	- (aa)	-	-
ENSMUST00000218874	-	943	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000015143's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04510	Focal adhesion	KEGG
mmu04520	Adherens junction	KEGG
mmu04530	Tight junction	KEGG
mmu04670	Leukocyte transendothelial migration	KEGG
mmu04810	Regulation of actin cytoskeleton	KEGG
mmu05146	Amoebiasis	KEGG
mmu05203	Viral carcinogenesis	KEGG
mmu05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000015143's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000015143	Actn1	100	99.215	ENSG00000072110	ACTN1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001725	stress fiber	23890175.	IDA	Component
GO:0001725	stress fiber	-	ISO	Component
GO:0001725	stress fiber	-	ISO	Component
GO:0001725	stress fiber	15841212.	TAS	Component
GO:0001726	ruffle	-	ISO	Component
GO:0003725	double-stranded RNA binding	21266579.	ISO	Function
GO:0003779	actin binding	-	IEA	Function
GO:0005178	integrin binding	11223950.	IPI	Function
GO:0005178	integrin binding	-	ISO	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005515	protein binding	12223541.16043482.22693585.23890175.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005884	actin filament	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005903	brush border	22114352.	IDA	Component
GO:0005911	cell-cell junction	-	ISO	Component
GO:0005916	fascia adherens	11732910.	IDA	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0005925	focal adhesion	15841212.	TAS	Component
GO:0007015	actin filament organization	-	ISO	Process
GO:0016020	membrane	-	IEA	Component
GO:0017166	vinculin binding	11223950.	IDA	Function
GO:0017166	vinculin binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030017	sarcomere	24364879.	IDA	Component
GO:0030018	Z disc	15665106.18332105.20215401.20368620.	IDA	Component
GO:0030054	cell junction	-	IEA	Component
GO:0030141	secretory granule	16043482.	NAS	Component
GO:0030220	platelet formation	-	ISO	Process
GO:0030374	nuclear receptor transcription coactivator activity	-	ISO	Function
GO:0030863	cortical cytoskeleton	15841212.	TAS	Component
GO:0030864	cortical actin cytoskeleton	-	ISO	Component
GO:0030865	cortical cytoskeleton organization	15841212.	TAS	Process
GO:0032127	dense core granule membrane	16043482.	TAS	Component
GO:0036344	platelet morphogenesis	-	ISO	Process
GO:0042803	protein homodimerization activity	11223950.	IDA	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0042803	protein homodimerization activity	15841212.	TAS	Function
GO:0042995	cell projection	-	ISO	Component
GO:0043197	dendritic spine	-	ISO	Component
GO:0044325	ion channel binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0048041	focal adhesion assembly	-	ISO	Process
GO:0050808	synapse organization	-	ISO	Process
GO:0051015	actin filament binding	11223950.15465019.	IDA	Function
GO:0051015	actin filament binding	-	ISO	Function
GO:0051017	actin filament bundle assembly	16043482.	IDA	Process
GO:0051271	negative regulation of cellular component movement	-	ISO	Process
GO:0051639	actin filament network formation	-	ISO	Process
GO:0051764	actin crosslink formation	-	IEA	Process
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0099173	postsynapse organization	-	ISO	Process
GO:0099186	structural constituent of postsynapse	-	ISO	Function