EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000015176 (Gene tree)
Gene ID: 70769
Gene Symbol: Nolc1
Alias: 3230402K17Rik|NOPP140|P130
Full Name: nucleolar and coiled-body phosphoprotein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 9668 bases
Position: chr19:46075863-46085530
Accession: 1918019
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000153329	SRP40_C	PF05022.12	3.3e-27	1	1
ENSMUSP00000153545	SRP40_C	PF05022.12	3.3e-27	1	1
ENSMUSP00000128331	SRP40_C	PF05022.12	3.3e-27	1	1
ENSMUSP00000153600	SRP40_C	PF05022.12	3.3e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000223741	-	741	-	ENSMUSP00000152921	197 (aa)	-	A0A286YCD1
ENSMUST00000224034	-	641	-	-	- (aa)	-	-
ENSMUST00000224434	-	614	-	-	- (aa)	-	-
ENSMUST00000165017	-	3634	-	ENSMUSP00000128331	702 (aa)	-	E9Q5C9
ENSMUST00000225758	-	1854	-	-	- (aa)	-	-
ENSMUST00000225780	-	2978	-	ENSMUSP00000153545	701 (aa)	-	A0A286YDT3
ENSMUST00000223683	-	2398	-	ENSMUSP00000153600	702 (aa)	-	A0A286YDV7
ENSMUST00000224490	-	516	-	ENSMUSP00000153641	36 (aa)	-	A0A286YDZ1
ENSMUST00000223728	-	3523	-	ENSMUSP00000153329	700 (aa)	-	A0A286YDA2

Gene Model

Click here to download ENSMUSG00000015176's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000015176's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000015176	Nolc1	100	69.413	ENSG00000166197	NOLC1	93	83.721	Homo_sapiens
ENSMUSG00000015176	Nolc1	100	62.069	ENSCHIG00000016755	NOLC1	58	61.009	Capra_hircus
ENSMUSG00000015176	Nolc1	99	64.296	ENSCPOG00000004504	NOLC1	61	65.443	Cavia_porcellus
ENSMUSG00000015176	Nolc1	100	69.499	ENSCCAG00000031293	NOLC1	60	68.765	Cebus_capucinus
ENSMUSG00000015176	Nolc1	100	70.474	ENSCATG00000020949	NOLC1	60	63.194	Cercocebus_atys
ENSMUSG00000015176	Nolc1	100	67.667	ENSCSAG00000005465	NOLC1	61	61.625	Chlorocebus_sabaeus
ENSMUSG00000015176	Nolc1	100	90.984	ENSDNOG00000025256	NOLC1	57	90.984	Dasypus_novemcinctus
ENSMUSG00000015176	Nolc1	100	72.269	ENSDORG00000001056	Nolc1	61	67.981	Dipodomys_ordii
ENSMUSG00000015176	Nolc1	81	68.950	ENSETEG00000019260	NOLC1	55	56.831	Echinops_telfairi
ENSMUSG00000015176	Nolc1	100	72.614	ENSEASG00005007519	NOLC1	81	91.453	Equus_asinus_asinus
ENSMUSG00000015176	Nolc1	100	66.667	ENSFDAG00000006050	NOLC1	61	63.991	Fukomys_damarensis
ENSMUSG00000015176	Nolc1	100	69.986	ENSLAFG00000014245	NOLC1	65	67.097	Loxodonta_africana
ENSMUSG00000015176	Nolc1	100	69.735	ENSMFAG00000044654	NOLC1	60	64.733	Macaca_fascicularis
ENSMUSG00000015176	Nolc1	100	69.874	ENSMMUG00000001183	NOLC1	60	65.197	Macaca_mulatta
ENSMUSG00000015176	Nolc1	100	69.421	ENSMLEG00000040773	NOLC1	60	62.645	Mandrillus_leucophaeus
ENSMUSG00000015176	Nolc1	100	89.013	MGP_CAROLIEiJ_G0023027	Nolc1	100	88.440	Mus_caroli
ENSMUSG00000015176	Nolc1	100	84.225	MGP_PahariEiJ_G0014517	Nolc1	100	84.225	Mus_pahari
ENSMUSG00000015176	Nolc1	100	98.009	MGP_SPRETEiJ_G0023948	Nolc1	100	98.009	Mus_spretus
ENSMUSG00000015176	Nolc1	100	73.126	ENSNGAG00000024139	Nolc1	61	73.903	Nannospalax_galili
ENSMUSG00000015176	Nolc1	100	70.195	ENSPANG00000021014	NOLC1	55	62.963	Papio_anubis
ENSMUSG00000015176	Nolc1	67	83.851	ENSRNOG00000018704	Nolc1	100	81.066	Rattus_norvegicus
ENSMUSG00000015176	Nolc1	100	65.691	ENSRBIG00000032216	NOLC1	58	65.148	Rhinopithecus_bieti
ENSMUSG00000015176	Nolc1	100	70.711	ENSRROG00000038056	NOLC1	58	65.376	Rhinopithecus_roxellana
ENSMUSG00000015176	Nolc1	100	68.837	ENSSBOG00000031205	NOLC1	60	63.953	Saimiri_boliviensis_boliviensis
ENSMUSG00000015176	Nolc1	100	66.436	ENSSARG00000004111	NOLC1	64	68.898	Sorex_araneus
ENSMUSG00000015176	Nolc1	100	72.261	ENSSSCG00000010576	NOLC1	64	73.434	Sus_scrofa

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	11470819.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	11424213.	IDA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	11470819.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0007000	nucleolus organization	11424213.	IDA	Process
GO:0015030	Cajal body	11470819.	IDA	Component
GO:0030532	small nuclear ribonucleoprotein complex	11470819.	TAS	Component