EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000015217 (Gene tree)
Gene ID: 15354
Gene Symbol: Hmgb3
Alias: Hmg2a|Hmg4
Full Name: high mobility group box 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 4759
Position: chrX: 71555918-71560676
Accession: 1098219
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000072699	-	1571	-	ENSMUSP00000110232	200 (aa)	-	O54879
ENSMUST00000088874	-	1728	-	ENSMUSP00000086260	200 (aa)	-	O54879
ENSMUST00000114582	-	1743	XM_006527842	ENSMUSP00000110229	200 (aa)	XP_006527905	O54879
ENSMUST00000132145	-	847	-	-	- (aa)	-	-
ENSMUST00000015361	-	1544	-	ENSMUSP00000015361	200 (aa)	-	O54879
ENSMUST00000123100	-	634	-	ENSMUSP00000116937	159 (aa)	-	A2AP78

Gene Model

Click here to download ENSMUSG00000015217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000015217's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000015217	Hmgb3	100	97.500	ENSG00000029993	HMGB3	100	97.500	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0002376	immune system process	-	IEA	Process
GO:0003677	DNA binding	19890330.	IDA	Function
GO:0003723	RNA binding	19890330.	IDA	Function
GO:0005634	nucleus	12714519.	IDA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006310	DNA recombination	21873635.	IBA	Process
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008301	DNA binding, bending	21873635.	IBA	Function
GO:0045087	innate immune response	-	IEA	Process
GO:0045089	positive regulation of innate immune response	21873635.	IBA	Process
GO:0045578	negative regulation of B cell differentiation	12714519.	IDA	Process
GO:0045638	negative regulation of myeloid cell differentiation	12714519.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process