EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000015748 (Gene tree)
Gene ID: 70767
Gene Symbol: Prpf3
Alias: 3632413F13Rik
Full Name: pre-mRNA processing factor 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 25762 bases
Position: chr3:95830124-95855885
Accession: 1918017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000015892	PRP3	PF08572.10	1.4e-78	1	1
ENSMUSP00000124950	PRP3	PF08572.10	1.4e-78	1	1
ENSMUSP00000015892	PWI	PF01480.17	7.2e-13	1	1
ENSMUSP00000124950	PWI	PF01480.17	7.2e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000163059	-	592	-	-	- (aa)	-	-
ENSMUST00000159901	-	575	-	ENSMUSP00000124444	114 (aa)	-	F6T4V0
ENSMUST00000160155	-	2548	-	-	- (aa)	-	-
ENSMUST00000161482	-	554	-	-	- (aa)	-	-
ENSMUST00000015892	-	2933	XM_006502080	ENSMUSP00000015892	683 (aa)	XP_006502143	Q922U1
ENSMUST00000161476	-	2732	-	ENSMUSP00000124950	683 (aa)	-	Q922U1
ENSMUST00000160109	-	800	-	ENSMUSP00000124302	101 (aa)	-	E0CYD0
ENSMUST00000161420	-	1800	-	-	- (aa)	-	-
ENSMUST00000161073	-	613	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000015748's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000015748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000015748	Prpf3	100	99.561	ENSG00000117360	PRPF3	100	99.561	Homo_sapiens
ENSMUSG00000015748	Prpf3	100	71.751	ENSAPOG00000015584	prpf3	99	72.316	Acanthochromis_polyacanthus
ENSMUSG00000015748	Prpf3	100	99.414	ENSAMEG00000001630	PRPF3	100	99.414	Ailuropoda_melanoleuca
ENSMUSG00000015748	Prpf3	100	71.994	ENSACIG00000007876	prpf3	99	71.004	Amphilophus_citrinellus
ENSMUSG00000015748	Prpf3	100	71.045	ENSAOCG00000011449	prpf3	99	72.262	Amphiprion_ocellaris
ENSMUSG00000015748	Prpf3	100	71.408	ENSATEG00000023583	prpf3	99	71.835	Anabas_testudineus
ENSMUSG00000015748	Prpf3	100	94.591	ENSAPLG00000002440	PRPF3	100	94.591	Anas_platyrhynchos
ENSMUSG00000015748	Prpf3	100	92.285	ENSACAG00000003176	PRPF3	100	92.576	Anolis_carolinensis
ENSMUSG00000015748	Prpf3	100	100.000	ENSANAG00000026138	PRPF3	100	100.000	Aotus_nancymaae
ENSMUSG00000015748	Prpf3	100	72.439	ENSACLG00000020127	prpf3	99	72.150	Astatotilapia_calliptera
ENSMUSG00000015748	Prpf3	100	73.944	ENSAMXG00000007306	prpf3	99	73.521	Astyanax_mexicanus
ENSMUSG00000015748	Prpf3	100	99.561	ENSBTAG00000013946	PRPF3	100	99.561	Bos_taurus
ENSMUSG00000015748	Prpf3	81	38.612	WBGene00010844	prp-3	82	38.750	Caenorhabditis_elegans
ENSMUSG00000015748	Prpf3	100	100.000	ENSCJAG00000009926	PRPF3	100	100.000	Callithrix_jacchus
ENSMUSG00000015748	Prpf3	100	99.561	ENSCAFG00000011820	PRPF3	100	99.561	Canis_familiaris
ENSMUSG00000015748	Prpf3	93	98.936	ENSCAFG00020019653	PRPF3	100	99.452	Canis_lupus_dingo
ENSMUSG00000015748	Prpf3	100	99.561	ENSCHIG00000015434	PRPF3	100	99.561	Capra_hircus
ENSMUSG00000015748	Prpf3	100	100.000	ENSTSYG00000001383	PRPF3	100	99.268	Carlito_syrichta
ENSMUSG00000015748	Prpf3	93	82.233	ENSCAPG00000017812	PRPF3	95	82.704	Cavia_aperea
ENSMUSG00000015748	Prpf3	100	99.414	ENSCPOG00000008068	PRPF3	100	99.414	Cavia_porcellus
ENSMUSG00000015748	Prpf3	100	99.561	ENSCCAG00000026380	PRPF3	100	99.561	Cebus_capucinus
ENSMUSG00000015748	Prpf3	100	99.010	ENSCATG00000041778	PRPF3	90	99.010	Cercocebus_atys
ENSMUSG00000015748	Prpf3	100	99.414	ENSCLAG00000015009	PRPF3	100	99.414	Chinchilla_lanigera
ENSMUSG00000015748	Prpf3	93	97.872	ENSCHOG00000011645	PRPF3	77	99.645	Choloepus_hoffmanni
ENSMUSG00000015748	Prpf3	100	96.199	ENSCPBG00000008216	PRPF3	100	96.199	Chrysemys_picta_bellii
ENSMUSG00000015748	Prpf3	61	59.189	ENSCING00000003312	-	99	58.711	Ciona_intestinalis
ENSMUSG00000015748	Prpf3	83	54.211	ENSCSAVG00000008720	-	94	54.973	Ciona_savignyi
ENSMUSG00000015748	Prpf3	100	100.000	ENSCANG00000036769	PRPF3	100	98.829	Colobus_angolensis_palliatus
ENSMUSG00000015748	Prpf3	100	99.561	ENSCGRG00001019100	Prpf3	100	99.561	Cricetulus_griseus_chok1gshd
ENSMUSG00000015748	Prpf3	100	99.561	ENSCGRG00000007322	Prpf3	100	99.561	Cricetulus_griseus_crigri
ENSMUSG00000015748	Prpf3	100	72.011	ENSCSEG00000002532	prpf3	99	70.605	Cynoglossus_semilaevis
ENSMUSG00000015748	Prpf3	100	72.340	ENSCVAG00000009318	prpf3	99	71.915	Cyprinodon_variegatus
ENSMUSG00000015748	Prpf3	100	72.688	ENSDARG00000086425	prpf3	99	72.404	Danio_rerio
ENSMUSG00000015748	Prpf3	91	100.000	ENSDNOG00000005904	PRPF3	100	90.190	Dasypus_novemcinctus
ENSMUSG00000015748	Prpf3	93	99.211	ENSDORG00000008664	Prpf3	100	99.211	Dipodomys_ordii
ENSMUSG00000015748	Prpf3	81	52.910	FBgn0036915	Prp3	99	53.091	Drosophila_melanogaster
ENSMUSG00000015748	Prpf3	100	98.097	ENSETEG00000019124	PRPF3	100	98.097	Echinops_telfairi
ENSMUSG00000015748	Prpf3	100	64.208	ENSEBUG00000011680	prpf3	99	64.071	Eptatretus_burgeri
ENSMUSG00000015748	Prpf3	100	99.414	ENSEASG00005001566	PRPF3	100	99.414	Equus_asinus_asinus
ENSMUSG00000015748	Prpf3	100	99.561	ENSECAG00000019840	PRPF3	100	99.561	Equus_caballus
ENSMUSG00000015748	Prpf3	92	100.000	ENSEEUG00000007338	PRPF3	85	99.291	Erinaceus_europaeus
ENSMUSG00000015748	Prpf3	100	65.906	ENSELUG00000013624	prpf3	99	66.334	Esox_lucius
ENSMUSG00000015748	Prpf3	100	99.561	ENSFCAG00000013940	PRPF3	100	99.561	Felis_catus
ENSMUSG00000015748	Prpf3	100	98.975	ENSFDAG00000010365	PRPF3	100	98.975	Fukomys_damarensis
ENSMUSG00000015748	Prpf3	100	72.845	ENSFHEG00000021746	prpf3	99	72.557	Fundulus_heteroclitus
ENSMUSG00000015748	Prpf3	100	71.146	ENSGMOG00000008535	prpf3	99	71.004	Gadus_morhua
ENSMUSG00000015748	Prpf3	100	94.444	ENSGALG00000028205	PRPF3	100	94.444	Gallus_gallus
ENSMUSG00000015748	Prpf3	100	72.063	ENSGAFG00000012671	prpf3	99	71.777	Gambusia_affinis
ENSMUSG00000015748	Prpf3	100	70.822	ENSGACG00000011792	prpf3	99	71.105	Gasterosteus_aculeatus
ENSMUSG00000015748	Prpf3	100	95.906	ENSGAGG00000013765	PRPF3	100	95.628	Gopherus_agassizii
ENSMUSG00000015748	Prpf3	100	100.000	ENSGGOG00000013174	PRPF3	100	99.704	Gorilla_gorilla
ENSMUSG00000015748	Prpf3	100	72.872	ENSHBUG00000003493	prpf3	99	72.583	Haplochromis_burtoni
ENSMUSG00000015748	Prpf3	100	99.122	ENSHGLG00000016569	PRPF3	100	99.122	Heterocephalus_glaber_female
ENSMUSG00000015748	Prpf3	100	69.839	ENSHGLG00000016033	-	100	70.425	Heterocephalus_glaber_female
ENSMUSG00000015748	Prpf3	100	70.425	ENSHGLG00100008951	-	95	90.909	Heterocephalus_glaber_male
ENSMUSG00000015748	Prpf3	100	99.122	ENSHGLG00100007590	PRPF3	100	99.122	Heterocephalus_glaber_male
ENSMUSG00000015748	Prpf3	100	68.279	ENSHCOG00000014058	prpf3	99	67.994	Hippocampus_comes
ENSMUSG00000015748	Prpf3	100	73.324	ENSIPUG00000000902	PRPF3	99	73.609	Ictalurus_punctatus
ENSMUSG00000015748	Prpf3	100	99.561	ENSSTOG00000001889	PRPF3	100	99.561	Ictidomys_tridecemlineatus
ENSMUSG00000015748	Prpf3	100	70.982	ENSKMAG00000001390	prpf3	99	70.697	Kryptolebias_marmoratus
ENSMUSG00000015748	Prpf3	100	70.904	ENSLBEG00000026310	prpf3	99	71.186	Labrus_bergylta
ENSMUSG00000015748	Prpf3	93	88.298	ENSLACG00000010541	PRPF3	100	82.261	Latimeria_chalumnae
ENSMUSG00000015748	Prpf3	100	99.268	ENSLAFG00000004713	PRPF3	100	99.268	Loxodonta_africana
ENSMUSG00000015748	Prpf3	100	100.000	ENSMFAG00000039791	PRPF3	100	99.561	Macaca_fascicularis
ENSMUSG00000015748	Prpf3	93	98.936	ENSMMUG00000016301	PRPF3	98	99.511	Macaca_mulatta
ENSMUSG00000015748	Prpf3	100	100.000	ENSMNEG00000038161	PRPF3	100	99.561	Macaca_nemestrina
ENSMUSG00000015748	Prpf3	99	66.962	ENSMLEG00000041065	-	98	66.372	Mandrillus_leucophaeus
ENSMUSG00000015748	Prpf3	100	99.010	ENSMLEG00000040609	PRPF3	100	99.704	Mandrillus_leucophaeus
ENSMUSG00000015748	Prpf3	100	71.955	ENSMAMG00000014968	prpf3	99	71.813	Mastacembelus_armatus
ENSMUSG00000015748	Prpf3	100	70.827	ENSMZEG00005015970	prpf3	99	70.506	Maylandia_zebra
ENSMUSG00000015748	Prpf3	100	94.444	ENSMGAG00000000707	PRPF3	100	94.444	Meleagris_gallopavo
ENSMUSG00000015748	Prpf3	100	99.268	ENSMAUG00000017112	Prpf3	100	99.268	Mesocricetus_auratus
ENSMUSG00000015748	Prpf3	100	99.561	ENSMICG00000015386	PRPF3	100	99.561	Microcebus_murinus
ENSMUSG00000015748	Prpf3	100	99.414	ENSMOCG00000000242	Prpf3	100	99.414	Microtus_ochrogaster
ENSMUSG00000015748	Prpf3	100	66.102	ENSMMOG00000016131	prpf3	99	66.667	Mola_mola
ENSMUSG00000015748	Prpf3	100	97.950	ENSMODG00000018774	PRPF3	100	97.950	Monodelphis_domestica
ENSMUSG00000015748	Prpf3	100	70.286	ENSMALG00000007257	prpf3	99	70.286	Monopterus_albus
ENSMUSG00000015748	Prpf3	100	100.000	MGP_CAROLIEiJ_G0025354	Prpf3	100	100.000	Mus_caroli
ENSMUSG00000015748	Prpf3	100	100.000	MGP_PahariEiJ_G0026798	Prpf3	100	100.000	Mus_pahari
ENSMUSG00000015748	Prpf3	100	100.000	MGP_SPRETEiJ_G0026298	Prpf3	100	100.000	Mus_spretus
ENSMUSG00000015748	Prpf3	100	96.193	ENSMPUG00000005080	PRPF3	100	96.193	Mustela_putorius_furo
ENSMUSG00000015748	Prpf3	100	98.830	ENSMLUG00000004646	-	100	98.830	Myotis_lucifugus
ENSMUSG00000015748	Prpf3	100	99.561	ENSNGAG00000000910	Prpf3	100	99.561	Nannospalax_galili
ENSMUSG00000015748	Prpf3	100	70.531	ENSNBRG00000003462	prpf3	99	70.251	Neolamprologus_brichardi
ENSMUSG00000015748	Prpf3	100	100.000	ENSNLEG00000009841	PRPF3	100	99.511	Nomascus_leucogenys
ENSMUSG00000015748	Prpf3	83	99.115	ENSMEUG00000008733	PRPF3	89	99.115	Notamacropus_eugenii
ENSMUSG00000015748	Prpf3	100	98.975	ENSOPRG00000010139	PRPF3	100	98.975	Ochotona_princeps
ENSMUSG00000015748	Prpf3	100	99.414	ENSODEG00000011363	-	100	99.414	Octodon_degus
ENSMUSG00000015748	Prpf3	100	73.768	ENSODEG00000014412	-	100	73.768	Octodon_degus
ENSMUSG00000015748	Prpf3	100	70.787	ENSONIG00000006394	prpf3	99	70.646	Oreochromis_niloticus
ENSMUSG00000015748	Prpf3	100	65.407	ENSOANG00000015441	PRPF3	100	65.116	Ornithorhynchus_anatinus
ENSMUSG00000015748	Prpf3	100	99.561	ENSOCUG00000011760	PRPF3	100	99.561	Oryctolagus_cuniculus
ENSMUSG00000015748	Prpf3	100	72.650	ENSORLG00000010330	prpf3	99	71.795	Oryzias_latipes
ENSMUSG00000015748	Prpf3	100	72.650	ENSORLG00020009054	prpf3	99	71.795	Oryzias_latipes_hni
ENSMUSG00000015748	Prpf3	100	72.443	ENSORLG00015015016	prpf3	99	71.591	Oryzias_latipes_hsok
ENSMUSG00000015748	Prpf3	100	71.777	ENSOMEG00000000940	prpf3	99	71.490	Oryzias_melastigma
ENSMUSG00000015748	Prpf3	100	93.421	ENSOGAG00000005352	PRPF3	100	93.421	Otolemur_garnettii
ENSMUSG00000015748	Prpf3	100	99.561	ENSOARG00000020798	PRPF3	100	99.561	Ovis_aries
ENSMUSG00000015748	Prpf3	99	75.816	ENSPPAG00000043769	-	99	75.371	Pan_paniscus
ENSMUSG00000015748	Prpf3	100	100.000	ENSPPAG00000030983	PRPF3	100	99.414	Pan_paniscus
ENSMUSG00000015748	Prpf3	100	99.561	ENSPPRG00000000731	PRPF3	100	99.561	Panthera_pardus
ENSMUSG00000015748	Prpf3	100	99.561	ENSPTIG00000005516	PRPF3	100	99.561	Panthera_tigris_altaica
ENSMUSG00000015748	Prpf3	99	74.926	ENSPTRG00000047819	-	99	74.481	Pan_troglodytes
ENSMUSG00000015748	Prpf3	100	100.000	ENSPTRG00000001254	PRPF3	100	99.561	Pan_troglodytes
ENSMUSG00000015748	Prpf3	100	99.414	ENSPANG00000000499	PRPF3	100	99.414	Papio_anubis
ENSMUSG00000015748	Prpf3	100	74.322	ENSPKIG00000010501	prpf3	99	74.465	Paramormyrops_kingsleyae
ENSMUSG00000015748	Prpf3	100	95.906	ENSPSIG00000014877	PRPF3	100	95.760	Pelodiscus_sinensis
ENSMUSG00000015748	Prpf3	100	67.149	ENSPMGG00000007776	prpf3	99	66.281	Periophthalmus_magnuspinnatus
ENSMUSG00000015748	Prpf3	100	99.561	ENSPEMG00000011672	Prpf3	100	99.561	Peromyscus_maniculatus_bairdii
ENSMUSG00000015748	Prpf3	63	72.374	ENSPMAG00000005588	prpf3	99	69.978	Petromyzon_marinus
ENSMUSG00000015748	Prpf3	100	97.950	ENSPCIG00000008795	PRPF3	100	97.950	Phascolarctos_cinereus
ENSMUSG00000015748	Prpf3	100	71.955	ENSPFOG00000013638	prpf3	99	71.388	Poecilia_formosa
ENSMUSG00000015748	Prpf3	100	71.977	ENSPLAG00000018103	prpf3	99	72.143	Poecilia_latipinna
ENSMUSG00000015748	Prpf3	100	72.063	ENSPMEG00000023546	prpf3	99	71.857	Poecilia_mexicana
ENSMUSG00000015748	Prpf3	100	72.000	ENSPREG00000017216	prpf3	99	71.714	Poecilia_reticulata
ENSMUSG00000015748	Prpf3	88	84.270	ENSPPYG00000018646	-	100	86.965	Pongo_abelii
ENSMUSG00000015748	Prpf3	93	99.528	ENSPPYG00000000900	PRPF3	99	99.528	Pongo_abelii
ENSMUSG00000015748	Prpf3	87	98.477	ENSPCAG00000014908	PRPF3	87	98.477	Procavia_capensis
ENSMUSG00000015748	Prpf3	100	100.000	ENSPCOG00000013828	PRPF3	100	99.414	Propithecus_coquereli
ENSMUSG00000015748	Prpf3	100	98.389	ENSPVAG00000013472	PRPF3	100	98.389	Pteropus_vampyrus
ENSMUSG00000015748	Prpf3	100	72.872	ENSPNYG00000004279	prpf3	99	72.583	Pundamilia_nyererei
ENSMUSG00000015748	Prpf3	100	73.099	ENSPNAG00000001799	prpf3	99	73.239	Pygocentrus_nattereri
ENSMUSG00000015748	Prpf3	100	99.854	ENSRNOG00000025629	Prpf3	100	99.854	Rattus_norvegicus
ENSMUSG00000015748	Prpf3	100	100.000	ENSRBIG00000028854	PRPF3	98	96.454	Rhinopithecus_bieti
ENSMUSG00000015748	Prpf3	100	100.000	ENSRROG00000027464	PRPF3	100	99.561	Rhinopithecus_roxellana
ENSMUSG00000015748	Prpf3	100	100.000	ENSSBOG00000033104	PRPF3	100	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000015748	Prpf3	100	97.807	ENSSHAG00000009548	PRPF3	100	97.807	Sarcophilus_harrisii
ENSMUSG00000015748	Prpf3	100	73.662	ENSSFOG00015022014	prpf3	99	73.239	Scleropages_formosus
ENSMUSG00000015748	Prpf3	100	71.950	ENSSMAG00000015739	prpf3	99	71.669	Scophthalmus_maximus
ENSMUSG00000015748	Prpf3	100	68.867	ENSSDUG00000006840	prpf3	99	68.867	Seriola_dumerili
ENSMUSG00000015748	Prpf3	100	70.629	ENSSLDG00000015423	prpf3	99	71.049	Seriola_lalandi_dorsalis
ENSMUSG00000015748	Prpf3	100	98.975	ENSSARG00000011064	PRPF3	100	98.975	Sorex_araneus
ENSMUSG00000015748	Prpf3	100	92.219	ENSSPUG00000000809	PRPF3	100	92.219	Sphenodon_punctatus
ENSMUSG00000015748	Prpf3	100	71.067	ENSSPAG00000018721	prpf3	99	71.994	Stegastes_partitus
ENSMUSG00000015748	Prpf3	100	99.561	ENSSSCG00000030119	PRPF3	100	99.561	Sus_scrofa
ENSMUSG00000015748	Prpf3	91	96.739	ENSTGUG00000004552	PRPF3	100	80.702	Taeniopygia_guttata
ENSMUSG00000015748	Prpf3	100	70.809	ENSTRUG00000014923	prpf3	99	70.520	Takifugu_rubripes
ENSMUSG00000015748	Prpf3	100	72.199	ENSTNIG00000008058	prpf3	100	71.023	Tetraodon_nigroviridis
ENSMUSG00000015748	Prpf3	82	99.167	ENSTBEG00000014072	PRPF3	88	99.167	Tupaia_belangeri
ENSMUSG00000015748	Prpf3	100	93.265	ENSTTRG00000010616	PRPF3	100	93.265	Tursiops_truncatus
ENSMUSG00000015748	Prpf3	80	99.453	ENSUAMG00000009345	PRPF3	100	99.453	Ursus_americanus
ENSMUSG00000015748	Prpf3	100	99.561	ENSUMAG00000003720	PRPF3	100	99.561	Ursus_maritimus
ENSMUSG00000015748	Prpf3	92	100.000	ENSVPAG00000005425	PRPF3	89	99.545	Vicugna_pacos
ENSMUSG00000015748	Prpf3	100	100.000	ENSVVUG00000007933	PRPF3	100	99.561	Vulpes_vulpes
ENSMUSG00000015748	Prpf3	100	87.518	ENSXETG00000018654	prpf3	100	87.518	Xenopus_tropicalis
ENSMUSG00000015748	Prpf3	100	71.693	ENSXMAG00000016347	prpf3	99	71.857	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0042802	identical protein binding	-	ISO	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component