EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000015937 (Gene tree)
Gene ID: 26914
Gene Symbol: H2afy
Alias: H2AF12M|MACROH2A1.2|mH2a1|macroH2A1
Full Name: H2A histone family%2C member Y
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 62743
Position: chr13: 56073619-56136361
Accession: 1349392
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000016081	-	2046	-	ENSMUSP00000016081	372 (aa)	-	Q9QZQ8
ENSMUST00000141031	-	4018	-	-	- (aa)	-	-
ENSMUST00000137835	-	728	-	-	- (aa)	-	-
ENSMUST00000154778	-	942	-	-	- (aa)	-	-
ENSMUST00000141589	-	600	-	-	- (aa)	-	-
ENSMUST00000154564	-	547	-	-	- (aa)	-	-
ENSMUST00000045788	-	1933	-	ENSMUSP00000038221	369 (aa)	-	Q9QZQ8
ENSMUST00000139511	-	889	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000015937's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04217	Necroptosis	KEGG
mmu05034	Alcoholism	KEGG
mmu05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000015937's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000015937	H2afy	100	98.387	ENSG00000113648	H2AFY	100	98.387	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000182	rDNA binding	-	ISO	Function
GO:0000228	nuclear chromosome	-	ISO	Component
GO:0000785	chromatin	-	ISO	Component
GO:0000786	nucleosome	-	ISO	Component
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000793	condensed chromosome	12082075.	IDA	Component
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	-	ISO	Function
GO:0001740	Barr body	11331621.	ISO	Component
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003682	chromatin binding	12082075.	IDA	Function
GO:0005634	nucleus	12419249.25526730.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005721	pericentric heterochromatin	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005813	centrosome	12082075.	TAS	Component
GO:0006325	chromatin organization	21873635.	IBA	Process
GO:0006334	nucleosome assembly	-	IEA	Process
GO:0007549	dosage compensation	15053874.	ISO	Process
GO:0010385	double-stranded methylated DNA binding	-	ISO	Function
GO:0019216	regulation of lipid metabolic process	25526730.	IDA	Process
GO:0019216	regulation of lipid metabolic process	-	ISO	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0030291	protein serine/threonine kinase inhibitor activity	-	ISO	Function
GO:0031490	chromatin DNA binding	-	ISO	Function
GO:0031492	nucleosomal DNA binding	18936163.	IDA	Function
GO:0031492	nucleosomal DNA binding	-	ISO	Function
GO:0033128	negative regulation of histone phosphorylation	-	ISO	Process
GO:0034184	positive regulation of maintenance of mitotic sister chromatid cohesion	-	ISO	Process
GO:0040029	regulation of gene expression, epigenetic	-	ISO	Process
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045618	positive regulation of keratinocyte differentiation	-	ISO	Process
GO:0045814	negative regulation of gene expression, epigenetic	-	ISO	Process
GO:0045815	positive regulation of gene expression, epigenetic	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	IEA	Function
GO:0051572	negative regulation of histone H3-K4 methylation	-	ISO	Process
GO:0061086	negative regulation of histone H3-K27 methylation	-	ISO	Process
GO:0071169	establishment of protein localization to chromatin	-	ISO	Process
GO:0071901	negative regulation of protein serine/threonine kinase activity	-	ISO	Process
GO:1901837	negative regulation of transcription of nucleolar large rRNA by RNA polymerase I	24071584.	IMP	Process
GO:1901837	negative regulation of transcription of nucleolar large rRNA by RNA polymerase I	-	ISO	Process
GO:1902750	negative regulation of cell cycle G2/M phase transition	-	ISO	Process
GO:1902882	regulation of response to oxidative stress	23022728.	IMP	Process
GO:1902882	regulation of response to oxidative stress	-	ISO	Process
GO:1902883	negative regulation of response to oxidative stress	23022728.	IMP	Process
GO:1902883	negative regulation of response to oxidative stress	-	ISO	Process
GO:1902884	positive regulation of response to oxidative stress	23022728.	IMP	Process
GO:1902884	positive regulation of response to oxidative stress	-	ISO	Process
GO:1904815	negative regulation of protein localization to chromosome, telomeric region	-	ISO	Process
GO:1990841	promoter-specific chromatin binding	18936163.	IDA	Function