EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000016018 (Gene tree)
Gene ID: 72198
Gene Symbol: Mtrex
Alias: 2610528A15Rik|Skiv2l2
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 59981 bases
Position: chr13:112867418-112927398
Accession: 1919448
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000022281	rRNA_proc-arch	PF13234.6	8.6e-87	1	1
ENSMUSP00000022281	DEAD	PF00270.29	1e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000223559	-	498	-	-	- (aa)	-	-
ENSMUST00000022281	-	3689	-	ENSMUSP00000022281	1040 (aa)	-	Q9CZU3
ENSMUST00000225037	-	639	-	-	- (aa)	-	-
ENSMUST00000224266	-	571	-	-	- (aa)	-	-
ENSMUST00000224639	-	717	-	-	- (aa)	-	-
ENSMUST00000225997	-	2673	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000016018's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000016018's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000016018	Mtrex	88	37.279	ENSMUSG00000040356	Skiv2l	76	37.279

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000016018	Mtrex	100	97.505	ENSG00000039123	MTREX	100	97.505	Homo_sapiens
ENSMUSG00000016018	Mtrex	100	82.792	ENSAPOG00000007814	mtrex	100	82.792	Acanthochromis_polyacanthus
ENSMUSG00000016018	Mtrex	100	97.124	ENSAMEG00000013856	MTREX	100	97.124	Ailuropoda_melanoleuca
ENSMUSG00000016018	Mtrex	92	87.565	ENSACIG00000015117	mtrex	96	87.565	Amphilophus_citrinellus
ENSMUSG00000016018	Mtrex	100	82.904	ENSAOCG00000011884	mtrex	100	82.792	Amphiprion_ocellaris
ENSMUSG00000016018	Mtrex	100	82.808	ENSAPEG00000019384	mtrex	100	82.696	Amphiprion_percula
ENSMUSG00000016018	Mtrex	100	83.668	ENSATEG00000015117	mtrex	100	83.668	Anabas_testudineus
ENSMUSG00000016018	Mtrex	95	92.850	ENSAPLG00000009694	MTREX	100	92.850	Anas_platyrhynchos
ENSMUSG00000016018	Mtrex	100	90.996	ENSACAG00000015200	MTREX	96	91.250	Anolis_carolinensis
ENSMUSG00000016018	Mtrex	100	97.409	ENSANAG00000023095	MTREX	100	97.409	Aotus_nancymaae
ENSMUSG00000016018	Mtrex	100	82.330	ENSACLG00000001921	mtrex	100	82.218	Astatotilapia_calliptera
ENSMUSG00000016018	Mtrex	97	81.299	ENSAMXG00000018751	mtrex	99	83.501	Astyanax_mexicanus
ENSMUSG00000016018	Mtrex	100	97.308	ENSBTAG00000010518	MTREX	100	97.308	Bos_taurus
ENSMUSG00000016018	Mtrex	91	53.417	WBGene00012342	mtr-4	95	52.648	Caenorhabditis_elegans
ENSMUSG00000016018	Mtrex	100	96.279	ENSCJAG00000001773	MTREX	100	96.279	Callithrix_jacchus
ENSMUSG00000016018	Mtrex	100	97.121	ENSCAFG00000006818	MTREX	100	97.121	Canis_familiaris
ENSMUSG00000016018	Mtrex	100	97.121	ENSCAFG00020024352	MTREX	100	97.121	Canis_lupus_dingo
ENSMUSG00000016018	Mtrex	100	97.121	ENSCHIG00000024413	MTREX	100	97.121	Capra_hircus
ENSMUSG00000016018	Mtrex	93	97.127	ENSTSYG00000007389	MTREX	100	97.127	Carlito_syrichta
ENSMUSG00000016018	Mtrex	96	72.545	ENSCAPG00000008696	MTREX	100	72.545	Cavia_aperea
ENSMUSG00000016018	Mtrex	100	96.833	ENSCPOG00000009797	MTREX	100	96.833	Cavia_porcellus
ENSMUSG00000016018	Mtrex	100	97.313	ENSCCAG00000014177	MTREX	100	97.313	Cebus_capucinus
ENSMUSG00000016018	Mtrex	100	97.409	ENSCATG00000042153	MTREX	100	97.409	Cercocebus_atys
ENSMUSG00000016018	Mtrex	100	96.545	ENSCLAG00000006622	MTREX	100	96.545	Chinchilla_lanigera
ENSMUSG00000016018	Mtrex	100	92.823	ENSCSAG00000016445	MTREX	100	92.919	Chlorocebus_sabaeus
ENSMUSG00000016018	Mtrex	70	98.611	ENSCHOG00000010936	-	70	98.611	Choloepus_hoffmanni
ENSMUSG00000016018	Mtrex	100	92.219	ENSCPBG00000026551	MTREX	94	92.699	Chrysemys_picta_bellii
ENSMUSG00000016018	Mtrex	99	66.252	ENSCING00000003239	-	99	66.092	Ciona_intestinalis
ENSMUSG00000016018	Mtrex	99	65.138	ENSCSAVG00000009304	-	100	69.570	Ciona_savignyi
ENSMUSG00000016018	Mtrex	100	97.313	ENSCANG00000035770	MTREX	100	97.313	Colobus_angolensis_palliatus
ENSMUSG00000016018	Mtrex	100	98.367	ENSCGRG00001024680	Mtrex	100	98.367	Cricetulus_griseus_chok1gshd
ENSMUSG00000016018	Mtrex	100	98.367	ENSCGRG00000000307	Mtrex	100	98.367	Cricetulus_griseus_crigri
ENSMUSG00000016018	Mtrex	100	81.757	ENSCSEG00000018621	mtrex	98	81.757	Cynoglossus_semilaevis
ENSMUSG00000016018	Mtrex	100	83.923	ENSCVAG00000004556	mtrex	100	83.923	Cyprinodon_variegatus
ENSMUSG00000016018	Mtrex	100	84.689	ENSDARG00000013457	mtrex	100	84.402	Danio_rerio
ENSMUSG00000016018	Mtrex	100	95.793	ENSDNOG00000015375	MTREX	100	95.793	Dasypus_novemcinctus
ENSMUSG00000016018	Mtrex	100	96.929	ENSDORG00000006782	Mtrex	100	96.929	Dipodomys_ordii
ENSMUSG00000016018	Mtrex	99	62.405	FBgn0001986	Mtr4	92	65.886	Drosophila_melanogaster
ENSMUSG00000016018	Mtrex	90	80.414	ENSETEG00000000727	MTREX	90	80.414	Echinops_telfairi
ENSMUSG00000016018	Mtrex	99	74.446	ENSEBUG00000012869	mtrex	99	74.138	Eptatretus_burgeri
ENSMUSG00000016018	Mtrex	100	96.737	ENSEASG00005013270	MTREX	100	96.737	Equus_asinus_asinus
ENSMUSG00000016018	Mtrex	100	96.833	ENSECAG00000023723	MTREX	100	99.074	Equus_caballus
ENSMUSG00000016018	Mtrex	98	87.805	ENSEEUG00000000527	MTREX	100	87.805	Erinaceus_europaeus
ENSMUSG00000016018	Mtrex	98	84.302	ENSELUG00000004898	mtrex	100	89.286	Esox_lucius
ENSMUSG00000016018	Mtrex	100	97.121	ENSFCAG00000010575	MTREX	100	97.121	Felis_catus
ENSMUSG00000016018	Mtrex	100	90.288	ENSFALG00000010850	MTREX	100	90.288	Ficedula_albicollis
ENSMUSG00000016018	Mtrex	100	96.538	ENSFDAG00000011199	MTREX	100	96.538	Fukomys_damarensis
ENSMUSG00000016018	Mtrex	100	83.127	ENSFHEG00000023014	mtrex	100	82.696	Fundulus_heteroclitus
ENSMUSG00000016018	Mtrex	100	79.350	ENSGMOG00000014702	mtrex	100	79.637	Gadus_morhua
ENSMUSG00000016018	Mtrex	100	91.258	ENSGALG00000014709	MTREX	86	91.451	Gallus_gallus
ENSMUSG00000016018	Mtrex	100	83.843	ENSGAFG00000012425	mtrex	100	83.843	Gambusia_affinis
ENSMUSG00000016018	Mtrex	100	79.083	ENSGACG00000016260	mtrex	96	84.891	Gasterosteus_aculeatus
ENSMUSG00000016018	Mtrex	100	92.027	ENSGAGG00000020036	MTREX	100	92.027	Gopherus_agassizii
ENSMUSG00000016018	Mtrex	100	97.601	ENSGGOG00000001867	MTREX	100	97.601	Gorilla_gorilla
ENSMUSG00000016018	Mtrex	100	82.330	ENSHBUG00000006229	mtrex	100	82.218	Haplochromis_burtoni
ENSMUSG00000016018	Mtrex	100	96.827	ENSHGLG00000019445	SKIV2L2	100	96.827	Heterocephalus_glaber_female
ENSMUSG00000016018	Mtrex	100	96.827	ENSHGLG00100011833	SKIV2L2	100	96.827	Heterocephalus_glaber_male
ENSMUSG00000016018	Mtrex	91	84.420	ENSHCOG00000019995	mtrex	100	84.420	Hippocampus_comes
ENSMUSG00000016018	Mtrex	100	84.674	ENSIPUG00000024348	skiv2l2	100	84.512	Ictalurus_punctatus
ENSMUSG00000016018	Mtrex	100	97.217	ENSSTOG00000010802	MTREX	100	97.217	Ictidomys_tridecemlineatus
ENSMUSG00000016018	Mtrex	100	91.154	ENSJJAG00000020975	Mtrex	100	91.154	Jaculus_jaculus
ENSMUSG00000016018	Mtrex	100	82.871	ENSKMAG00000012642	mtrex	100	82.871	Kryptolebias_marmoratus
ENSMUSG00000016018	Mtrex	100	83.174	ENSLBEG00000019367	mtrex	99	85.819	Labrus_bergylta
ENSMUSG00000016018	Mtrex	100	88.280	ENSLACG00000009075	MTREX	100	87.847	Latimeria_chalumnae
ENSMUSG00000016018	Mtrex	100	87.236	ENSLOCG00000010186	mtrex	100	87.044	Lepisosteus_oculatus
ENSMUSG00000016018	Mtrex	99	94.434	ENSLAFG00000010497	MTREX	100	94.530	Loxodonta_africana
ENSMUSG00000016018	Mtrex	100	97.409	ENSMFAG00000031610	MTREX	100	97.409	Macaca_fascicularis
ENSMUSG00000016018	Mtrex	100	96.264	ENSMMUG00000010379	MTREX	100	96.264	Macaca_mulatta
ENSMUSG00000016018	Mtrex	100	97.409	ENSMNEG00000032746	MTREX	100	97.409	Macaca_nemestrina
ENSMUSG00000016018	Mtrex	100	97.409	ENSMLEG00000041051	MTREX	100	97.409	Mandrillus_leucophaeus
ENSMUSG00000016018	Mtrex	95	86.203	ENSMAMG00000016753	mtrex	96	88.309	Mastacembelus_armatus
ENSMUSG00000016018	Mtrex	100	82.330	ENSMZEG00005000414	mtrex	100	82.218	Maylandia_zebra
ENSMUSG00000016018	Mtrex	95	68.016	ENSMGAG00000003980	MTREX	99	68.016	Meleagris_gallopavo
ENSMUSG00000016018	Mtrex	100	98.271	ENSMAUG00000010727	Mtrex	100	98.271	Mesocricetus_auratus
ENSMUSG00000016018	Mtrex	100	97.793	ENSMICG00000012779	MTREX	100	97.793	Microcebus_murinus
ENSMUSG00000016018	Mtrex	100	98.369	ENSMOCG00000019886	Mtrex	100	98.369	Microtus_ochrogaster
ENSMUSG00000016018	Mtrex	100	81.644	ENSMMOG00000002476	mtrex	100	81.931	Mola_mola
ENSMUSG00000016018	Mtrex	100	93.269	ENSMODG00000019494	MTREX	100	93.558	Monodelphis_domestica
ENSMUSG00000016018	Mtrex	92	81.986	ENSMALG00000002917	mtrex	99	81.986	Monopterus_albus
ENSMUSG00000016018	Mtrex	100	99.423	MGP_CAROLIEiJ_G0018896	Mtrex	100	99.423	Mus_caroli
ENSMUSG00000016018	Mtrex	100	99.038	MGP_PahariEiJ_G0015967	Mtrex	100	99.038	Mus_pahari
ENSMUSG00000016018	Mtrex	100	100.000	MGP_SPRETEiJ_G0019775	Mtrex	100	100.000	Mus_spretus
ENSMUSG00000016018	Mtrex	100	97.313	ENSMPUG00000007619	MTREX	100	97.313	Mustela_putorius_furo
ENSMUSG00000016018	Mtrex	100	96.165	ENSMLUG00000001152	MTREX	100	96.165	Myotis_lucifugus
ENSMUSG00000016018	Mtrex	100	98.081	ENSNGAG00000011938	Mtrex	100	98.081	Nannospalax_galili
ENSMUSG00000016018	Mtrex	100	82.426	ENSNBRG00000011293	mtrex	100	82.314	Neolamprologus_brichardi
ENSMUSG00000016018	Mtrex	100	93.295	ENSNLEG00000001494	MTREX	100	93.391	Nomascus_leucogenys
ENSMUSG00000016018	Mtrex	83	100.000	ENSMEUG00000006496	-	83	100.000	Notamacropus_eugenii
ENSMUSG00000016018	Mtrex	100	82.212	ENSOPRG00000008009	MTREX	100	82.212	Ochotona_princeps
ENSMUSG00000016018	Mtrex	100	95.969	ENSODEG00000017234	MTREX	100	96.065	Octodon_degus
ENSMUSG00000016018	Mtrex	100	82.235	ENSONIG00000007587	mtrex	100	82.409	Oreochromis_niloticus
ENSMUSG00000016018	Mtrex	100	97.500	ENSOCUG00000004463	MTREX	100	97.500	Oryctolagus_cuniculus
ENSMUSG00000016018	Mtrex	100	82.459	ENSORLG00000005443	mtrex	100	82.330	Oryzias_latipes
ENSMUSG00000016018	Mtrex	100	82.364	ENSORLG00020006329	mtrex	100	82.235	Oryzias_latipes_hni
ENSMUSG00000016018	Mtrex	100	82.269	ENSORLG00015012924	mtrex	100	82.235	Oryzias_latipes_hsok
ENSMUSG00000016018	Mtrex	100	81.602	ENSOMEG00000008825	mtrex	100	81.775	Oryzias_melastigma
ENSMUSG00000016018	Mtrex	100	97.409	ENSOGAG00000002886	MTREX	100	97.409	Otolemur_garnettii
ENSMUSG00000016018	Mtrex	100	96.842	ENSOARG00000007764	MTREX	100	96.842	Ovis_aries
ENSMUSG00000016018	Mtrex	100	97.505	ENSPPAG00000039291	MTREX	100	97.505	Pan_paniscus
ENSMUSG00000016018	Mtrex	100	97.121	ENSPPRG00000019701	MTREX	100	97.121	Panthera_pardus
ENSMUSG00000016018	Mtrex	100	95.585	ENSPTIG00000009313	MTREX	100	95.489	Panthera_tigris_altaica
ENSMUSG00000016018	Mtrex	100	97.505	ENSPTRG00000016878	MTREX	100	97.505	Pan_troglodytes
ENSMUSG00000016018	Mtrex	100	97.313	ENSPANG00000009697	MTREX	100	97.313	Papio_anubis
ENSMUSG00000016018	Mtrex	100	86.699	ENSPKIG00000020833	mtrex	100	86.699	Paramormyrops_kingsleyae
ENSMUSG00000016018	Mtrex	100	90.840	ENSPSIG00000012150	MTREX	100	92.507	Pelodiscus_sinensis
ENSMUSG00000016018	Mtrex	100	81.375	ENSPMGG00000002582	mtrex	100	81.375	Periophthalmus_magnuspinnatus
ENSMUSG00000016018	Mtrex	95	65.528	ENSPMAG00000009668	mtrex	100	65.292	Petromyzon_marinus
ENSMUSG00000016018	Mtrex	91	96.515	ENSPCIG00000024730	MTREX	100	96.515	Phascolarctos_cinereus
ENSMUSG00000016018	Mtrex	75	87.072	ENSPFOG00000003141	mtrex	100	87.310	Poecilia_formosa
ENSMUSG00000016018	Mtrex	100	83.461	ENSPLAG00000021311	mtrex	100	83.828	Poecilia_latipinna
ENSMUSG00000016018	Mtrex	92	87.408	ENSPMEG00000010597	mtrex	99	87.723	Poecilia_mexicana
ENSMUSG00000016018	Mtrex	100	83.270	ENSPREG00000003089	mtrex	100	83.636	Poecilia_reticulata
ENSMUSG00000016018	Mtrex	98	97.561	ENSPPYG00000015469	MTREX	98	97.561	Pongo_abelii
ENSMUSG00000016018	Mtrex	94	82.791	ENSPCAG00000013120	MTREX	94	82.791	Procavia_capensis
ENSMUSG00000016018	Mtrex	99	91.992	ENSPCOG00000018092	MTREX	100	91.992	Propithecus_coquereli
ENSMUSG00000016018	Mtrex	100	97.313	ENSPVAG00000002445	MTREX	100	97.313	Pteropus_vampyrus
ENSMUSG00000016018	Mtrex	100	82.235	ENSPNYG00000006164	mtrex	100	82.122	Pundamilia_nyererei
ENSMUSG00000016018	Mtrex	100	85.646	ENSPNAG00000008794	mtrex	100	85.646	Pygocentrus_nattereri
ENSMUSG00000016018	Mtrex	99	98.542	ENSRNOG00000010125	Mtrex	97	98.542	Rattus_norvegicus
ENSMUSG00000016018	Mtrex	100	95.681	ENSRBIG00000034930	MTREX	100	95.681	Rhinopithecus_bieti
ENSMUSG00000016018	Mtrex	100	97.409	ENSRROG00000039895	MTREX	100	97.409	Rhinopithecus_roxellana
ENSMUSG00000016018	Mtrex	90	55.870	YJL050W	MTR4	89	55.870	Saccharomyces_cerevisiae
ENSMUSG00000016018	Mtrex	100	97.217	ENSSBOG00000026693	MTREX	100	97.217	Saimiri_boliviensis_boliviensis
ENSMUSG00000016018	Mtrex	96	95.186	ENSSHAG00000004600	MTREX	100	95.186	Sarcophilus_harrisii
ENSMUSG00000016018	Mtrex	100	87.548	ENSSFOG00015014355	skiv2l2	100	87.548	Scleropages_formosus
ENSMUSG00000016018	Mtrex	100	82.634	ENSSMAG00000007572	mtrex	100	82.792	Scophthalmus_maximus
ENSMUSG00000016018	Mtrex	100	83.302	ENSSDUG00000023789	mtrex	100	83.365	Seriola_dumerili
ENSMUSG00000016018	Mtrex	100	83.078	ENSSLDG00000006301	mtrex	100	83.078	Seriola_lalandi_dorsalis
ENSMUSG00000016018	Mtrex	100	93.858	ENSSARG00000008387	MTREX	100	93.858	Sorex_araneus
ENSMUSG00000016018	Mtrex	100	79.635	ENSSPUG00000007071	MTREX	100	79.635	Sphenodon_punctatus
ENSMUSG00000016018	Mtrex	100	81.635	ENSSPAG00000011319	mtrex	100	82.019	Stegastes_partitus
ENSMUSG00000016018	Mtrex	100	97.121	ENSSSCG00000016911	MTREX	100	97.121	Sus_scrofa
ENSMUSG00000016018	Mtrex	100	90.010	ENSTGUG00000002480	MTREX	100	89.808	Taeniopygia_guttata
ENSMUSG00000016018	Mtrex	100	82.887	ENSTRUG00000014571	mtrex	100	82.887	Takifugu_rubripes
ENSMUSG00000016018	Mtrex	100	81.190	ENSTBEG00000007769	MTREX	100	81.478	Tupaia_belangeri
ENSMUSG00000016018	Mtrex	100	97.115	ENSTTRG00000008678	MTREX	100	97.115	Tursiops_truncatus
ENSMUSG00000016018	Mtrex	100	97.025	ENSUAMG00000023061	MTREX	100	97.025	Ursus_americanus
ENSMUSG00000016018	Mtrex	100	96.456	ENSUMAG00000009373	MTREX	99	99.080	Ursus_maritimus
ENSMUSG00000016018	Mtrex	100	86.180	ENSVPAG00000011174	MTREX	100	86.084	Vicugna_pacos
ENSMUSG00000016018	Mtrex	100	97.313	ENSVVUG00000021337	MTREX	100	97.313	Vulpes_vulpes
ENSMUSG00000016018	Mtrex	100	88.410	ENSXETG00000032798	MTREX	100	88.410	Xenopus_tropicalis
ENSMUSG00000016018	Mtrex	100	83.541	ENSXMAG00000004799	mtrex	100	83.541	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000176	nuclear exosome (RNase complex)	-	ISO	Component
GO:0000178	exosome (RNase complex)	-	ISO	Component
GO:0000460	maturation of 5.8S rRNA	21873635.	IBA	Process
GO:0000460	maturation of 5.8S rRNA	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003724	RNA helicase activity	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031499	TRAMP complex	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component