EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000016503 (Gene tree)
Gene ID: 66596
Gene Symbol: Gtf3a
Alias: 2010015D03Rik|2610111I01Rik|5330403M05Rik
Full Name: general transcription factor III A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 6958 bases
Position: chr5:146948657-146955614
Accession: 1913846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000115824	zf-C2H2	PF00096.26	9.8e-34	1	5
ENSMUSP00000115824	zf-C2H2	PF00096.26	9.8e-34	2	5
ENSMUSP00000115824	zf-C2H2	PF00096.26	9.8e-34	3	5
ENSMUSP00000115824	zf-C2H2	PF00096.26	9.8e-34	4	5
ENSMUSP00000115824	zf-C2H2	PF00096.26	9.8e-34	5	5
ENSMUSP00000119607	zf-C2H2	PF00096.26	2e-33	1	5
ENSMUSP00000119607	zf-C2H2	PF00096.26	2e-33	2	5
ENSMUSP00000119607	zf-C2H2	PF00096.26	2e-33	3	5
ENSMUSP00000119607	zf-C2H2	PF00096.26	2e-33	4	5
ENSMUSP00000119607	zf-C2H2	PF00096.26	2e-33	5	5
ENSMUSP00000156679	zf-C2H2	PF00096.26	2e-33	1	5
ENSMUSP00000156679	zf-C2H2	PF00096.26	2e-33	2	5
ENSMUSP00000156679	zf-C2H2	PF00096.26	2e-33	3	5
ENSMUSP00000156679	zf-C2H2	PF00096.26	2e-33	4	5
ENSMUSP00000156679	zf-C2H2	PF00096.26	2e-33	5	5
ENSMUSP00000115824	zf-met	PF12874.7	0.00066	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000146511	-	1298	-	ENSMUSP00000119607	364 (aa)	-	F6RCF6
ENSMUST00000133682	-	1970	-	-	- (aa)	-	-
ENSMUST00000133296	-	1678	-	-	- (aa)	-	-
ENSMUST00000132102	-	1426	-	ENSMUSP00000115824	342 (aa)	-	F6SIJ4
ENSMUST00000233741	-	1095	-	ENSMUSP00000156679	364 (aa)	-	Q8VHT7

Gene Model

Click here to download ENSMUSG00000016503's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000016503's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000016503	Gtf3a	99	78.788	ENSAMEG00000015824	GTF3A	94	82.647	Ailuropoda_melanoleuca
ENSMUSG00000016503	Gtf3a	97	77.711	ENSBTAG00000012600	GTF3A	95	79.706	Bos_taurus
ENSMUSG00000016503	Gtf3a	93	81.765	ENSCAFG00000006794	GTF3A	93	81.765	Canis_familiaris
ENSMUSG00000016503	Gtf3a	93	80.000	ENSCHIG00000021040	-	80	80.000	Capra_hircus
ENSMUSG00000016503	Gtf3a	93	79.412	ENSCHIG00000010341	-	95	79.412	Capra_hircus
ENSMUSG00000016503	Gtf3a	92	75.740	ENSTSYG00000004206	GTF3A	93	80.769	Carlito_syrichta
ENSMUSG00000016503	Gtf3a	80	79.923	ENSCAPG00000015862	GTF3A	97	82.470	Cavia_aperea
ENSMUSG00000016503	Gtf3a	94	80.805	ENSCPOG00000010143	GTF3A	98	81.734	Cavia_porcellus
ENSMUSG00000016503	Gtf3a	95	78.899	ENSCLAG00000003912	GTF3A	96	82.803	Chinchilla_lanigera
ENSMUSG00000016503	Gtf3a	99	77.808	ENSDNOG00000037405	-	81	81.050	Dasypus_novemcinctus
ENSMUSG00000016503	Gtf3a	92	78.571	ENSETEG00000003225	GTF3A	71	76.190	Echinops_telfairi
ENSMUSG00000016503	Gtf3a	97	70.181	ENSEASG00005013216	-	86	71.914	Equus_asinus_asinus
ENSMUSG00000016503	Gtf3a	99	78.512	ENSEASG00005022495	-	76	81.232	Equus_asinus_asinus
ENSMUSG00000016503	Gtf3a	91	75.758	ENSECAG00000024825	-	77	74.780	Equus_caballus
ENSMUSG00000016503	Gtf3a	99	79.339	ENSECAG00000014803	GTF3A	86	78.523	Equus_caballus
ENSMUSG00000016503	Gtf3a	99	75.824	ENSEEUG00000004307	GTF3A	84	79.765	Erinaceus_europaeus
ENSMUSG00000016503	Gtf3a	99	79.614	ENSFCAG00000006982	GTF3A	79	82.991	Felis_catus
ENSMUSG00000016503	Gtf3a	94	80.615	ENSFDAG00000016841	GTF3A	100	80.923	Fukomys_damarensis
ENSMUSG00000016503	Gtf3a	91	82.051	ENSHGLG00000004173	GTF3A	97	82.692	Heterocephalus_glaber_female
ENSMUSG00000016503	Gtf3a	91	82.051	ENSHGLG00100011561	GTF3A	97	82.692	Heterocephalus_glaber_male
ENSMUSG00000016503	Gtf3a	91	82.428	ENSSTOG00000013853	GTF3A	100	83.387	Ictidomys_tridecemlineatus
ENSMUSG00000016503	Gtf3a	87	79.137	ENSJJAG00000011501	Gtf3a	88	85.232	Jaculus_jaculus
ENSMUSG00000016503	Gtf3a	99	70.000	ENSLAFG00000027315	GTF3A	94	73.121	Loxodonta_africana
ENSMUSG00000016503	Gtf3a	99	84.488	ENSMAUG00000016253	Gtf3a	91	87.500	Mesocricetus_auratus
ENSMUSG00000016503	Gtf3a	99	76.923	ENSMICG00000014763	GTF3A	91	82.738	Microcebus_murinus
ENSMUSG00000016503	Gtf3a	100	98.352	MGP_CAROLIEiJ_G0028031	Gtf3a	100	98.352	Mus_caroli
ENSMUSG00000016503	Gtf3a	100	96.712	MGP_PahariEiJ_G0024597	Gtf3a	100	96.712	Mus_pahari
ENSMUSG00000016503	Gtf3a	100	99.176	MGP_SPRETEiJ_G0029029	Gtf3a	100	99.176	Mus_spretus
ENSMUSG00000016503	Gtf3a	99	78.237	ENSMPUG00000005835	GTF3A	98	78.333	Mustela_putorius_furo
ENSMUSG00000016503	Gtf3a	92	85.235	ENSMLUG00000002158	GTF3A	99	83.939	Myotis_lucifugus
ENSMUSG00000016503	Gtf3a	99	78.356	ENSNLEG00000000331	GTF3A	93	82.111	Nomascus_leucogenys
ENSMUSG00000016503	Gtf3a	90	54.740	ENSMEUG00000010089	GTF3A	92	55.591	Notamacropus_eugenii
ENSMUSG00000016503	Gtf3a	92	74.030	ENSOPRG00000000854	-	83	74.030	Ochotona_princeps
ENSMUSG00000016503	Gtf3a	97	78.443	ENSODEG00000006725	GTF3A	80	81.232	Octodon_degus
ENSMUSG00000016503	Gtf3a	99	76.860	ENSOCUG00000011713	GTF3A	77	81.250	Oryctolagus_cuniculus
ENSMUSG00000016503	Gtf3a	99	76.986	ENSOGAG00000014589	GTF3A	99	77.534	Otolemur_garnettii
ENSMUSG00000016503	Gtf3a	93	75.000	ENSOARG00000012551	GTF3A	93	75.000	Ovis_aries
ENSMUSG00000016503	Gtf3a	99	79.614	ENSPPRG00000002368	GTF3A	94	82.991	Panthera_pardus
ENSMUSG00000016503	Gtf3a	90	78.523	ENSPTIG00000018958	GTF3A	76	82.609	Panthera_tigris_altaica
ENSMUSG00000016503	Gtf3a	90	51.737	ENSPSIG00000011722	GTF3A	84	56.769	Pelodiscus_sinensis
ENSMUSG00000016503	Gtf3a	98	78.056	ENSPPYG00000005235	GTF3A	99	77.500	Pongo_abelii
ENSMUSG00000016503	Gtf3a	93	79.825	ENSPCOG00000016742	GTF3A	77	80.702	Propithecus_coquereli
ENSMUSG00000016503	Gtf3a	93	79.706	ENSPVAG00000012837	GTF3A	81	79.706	Pteropus_vampyrus
ENSMUSG00000016503	Gtf3a	99	72.055	ENSRROG00000043264	GTF3A	91	76.418	Rhinopithecus_roxellana
ENSMUSG00000016503	Gtf3a	90	73.394	ENSSHAG00000016965	GTF3A	90	76.115	Sarcophilus_harrisii
ENSMUSG00000016503	Gtf3a	90	71.061	ENSSARG00000010692	GTF3A	86	71.704	Sorex_araneus
ENSMUSG00000016503	Gtf3a	93	67.160	ENSSPUG00000005307	GTF3A	88	68.997	Sphenodon_punctatus
ENSMUSG00000016503	Gtf3a	77	46.617	ENSTRUG00000005241	gtf3ab	86	45.734	Takifugu_rubripes
ENSMUSG00000016503	Gtf3a	80	85.306	ENSTBEG00000012075	GTF3A	61	84.375	Tupaia_belangeri
ENSMUSG00000016503	Gtf3a	99	71.823	ENSTTRG00000008538	GTF3A	82	75.294	Tursiops_truncatus
ENSMUSG00000016503	Gtf3a	99	78.512	ENSUAMG00000019189	GTF3A	94	82.353	Ursus_americanus
ENSMUSG00000016503	Gtf3a	88	82.724	ENSUMAG00000016941	GTF3A	100	82.724	Ursus_maritimus
ENSMUSG00000016503	Gtf3a	78	85.654	ENSVPAG00000004995	GTF3A	99	79.461	Vicugna_pacos
ENSMUSG00000016503	Gtf3a	99	77.473	ENSVVUG00000009197	GTF3A	94	81.232	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	11814676.	IDA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0008097	5S rRNA binding	-	ISO	Function
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042273	ribosomal large subunit biogenesis	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function