EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000016554 (Gene tree)
Gene ID
55944
Gene Symbol
Eif3d
Alias
66/67kDa|Eif3s7|eIF3p66|mouse translation initiation factor eIF3 p66
Full Name
eukaryotic translation initiation factor 3%2C subunit D
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
11816 bases
Position
chr15:77958998-77970813
Accession
1933181
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000098053eIF-3_zetaPF05091.127.3e-21711
ENSMUSP00000155152eIF-3_zetaPF05091.126.2e-3411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000230419-706-ENSMUSP00000155152169 (aa)-A0A2R8VK20
ENSMUST00000100484-1899XM_006521192ENSMUSP00000098053548 (aa)XP_006521255O70194
ENSMUST00000229737-248--- (aa)--
ENSMUST00000230711-673--- (aa)--
ENSMUST00000229824-742--- (aa)--
ENSMUST00000229713-395--- (aa)--
ENSMUST00000229413-590--- (aa)--
ENSMUST00000229784-2546--- (aa)--
Gene Model
Click here to download ENSMUSG00000016554's gene model file
Pathways
Pathway IDPathway NameSource
mmu03013RNA transportKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000016554's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000016554Eif3d10098.905ENSG00000100353EIF3D10098.905Homo_sapiens
ENSMUSG00000016554Eif3d10093.529ENSAPOG00000002054eif3d9892.070Acanthochromis_polyacanthus
ENSMUSG00000016554Eif3d10099.408ENSAMEG00000009639EIF3D10098.540Ailuropoda_melanoleuca
ENSMUSG00000016554Eif3d10094.706ENSACIG00000013847eif3d9493.208Amphilophus_citrinellus
ENSMUSG00000016554Eif3d10092.442ENSAOCG00000022455eif3d9692.293Amphiprion_ocellaris
ENSMUSG00000016554Eif3d10093.529ENSAOCG00000005916-9790.541Amphiprion_ocellaris
ENSMUSG00000016554Eif3d10092.442ENSAPEG00000020361eif3d9692.293Amphiprion_percula
ENSMUSG00000016554Eif3d10092.442ENSATEG00000020784eif3d9692.481Anabas_testudineus
ENSMUSG00000016554Eif3d10095.882ENSAPLG00000002632EIF3D9988.491Anas_platyrhynchos
ENSMUSG00000016554Eif3d10095.266ENSACAG00000016308EIF3D9795.463Anolis_carolinensis
ENSMUSG00000016554Eif3d10098.905ENSANAG00000026835EIF3D10098.905Aotus_nancymaae
ENSMUSG00000016554Eif3d10094.706ENSACLG00000021167eif3d9792.830Astatotilapia_calliptera
ENSMUSG00000016554Eif3d7391.791ENSACLG00000021852eif3d8191.791Astatotilapia_calliptera
ENSMUSG00000016554Eif3d7391.791ENSACLG00000021768EIF3D8191.791Astatotilapia_calliptera
ENSMUSG00000016554Eif3d7391.791ENSACLG00000021712eif3d7891.791Astatotilapia_calliptera
ENSMUSG00000016554Eif3d7391.791ENSACLG00000021430EIF3D8991.791Astatotilapia_calliptera
ENSMUSG00000016554Eif3d10091.860ENSAMXG00000017547eif3d9691.353Astyanax_mexicanus
ENSMUSG00000016554Eif3d10099.408ENSBTAG00000001988EIF3D10098.905Bos_taurus
ENSMUSG00000016554Eif3d9644.883WBGene00001227eif-3.D9745.422Caenorhabditis_elegans
ENSMUSG00000016554Eif3d10098.905ENSCJAG00000013831EIF3D10098.905Callithrix_jacchus
ENSMUSG00000016554Eif3d10099.408ENSCAFG00000001544EIF3D10099.088Canis_familiaris
ENSMUSG00000016554Eif3d10099.408ENSCAFG00020004483EIF3D10099.088Canis_lupus_dingo
ENSMUSG00000016554Eif3d10099.408ENSCHIG00000012106EIF3D10098.905Capra_hircus
ENSMUSG00000016554Eif3d10098.723ENSTSYG00000008540EIF3D10098.723Carlito_syrichta
ENSMUSG00000016554Eif3d9997.064ENSCAPG00000015164EIF3D9797.064Cavia_aperea
ENSMUSG00000016554Eif3d10099.088ENSCPOG00000002529EIF3D10099.088Cavia_porcellus
ENSMUSG00000016554Eif3d10098.905ENSCCAG00000027331EIF3D10098.905Cebus_capucinus
ENSMUSG00000016554Eif3d10098.905ENSCATG00000045003EIF3D10098.905Cercocebus_atys
ENSMUSG00000016554Eif3d10098.905ENSCLAG00000016545EIF3D10098.905Chinchilla_lanigera
ENSMUSG00000016554Eif3d10098.225ENSCSAG00000007898EIF3D10098.897Chlorocebus_sabaeus
ENSMUSG00000016554Eif3d10098.817ENSCHOG00000004811EIF3D9995.421Choloepus_hoffmanni
ENSMUSG00000016554Eif3d10097.041ENSCPBG00000016309EIF3D9796.597Chrysemys_picta_bellii
ENSMUSG00000016554Eif3d9664.991ENSCING00000003680-9665.121Ciona_intestinalis
ENSMUSG00000016554Eif3d9961.879ENSCSAVG00000001450-8970.000Ciona_savignyi
ENSMUSG00000016554Eif3d10098.905ENSCANG00000031179EIF3D10098.905Colobus_angolensis_palliatus
ENSMUSG00000016554Eif3d100100.000ENSCGRG00001016584EIF3D10099.818Cricetulus_griseus_chok1gshd
ENSMUSG00000016554Eif3d100100.000ENSCGRG00000000302EIF3D10099.818Cricetulus_griseus_crigri
ENSMUSG00000016554Eif3d10093.529ENSCSEG00000020548eif3d9692.075Cynoglossus_semilaevis
ENSMUSG00000016554Eif3d7892.857ENSCVAG00000001999eif3d8492.857Cyprinodon_variegatus
ENSMUSG00000016554Eif3d10092.353ENSDARG00000021257eif3d10090.244Danio_rerio
ENSMUSG00000016554Eif3d10098.817ENSDNOG00000018482EIF3D9298.601Dasypus_novemcinctus
ENSMUSG00000016554Eif3d10098.817ENSDORG00000010491Eif3d10098.723Dipodomys_ordii
ENSMUSG00000016554Eif3d9853.818FBgn0037994eIF3d29654.074Drosophila_melanogaster
ENSMUSG00000016554Eif3d9659.013FBgn0040227eIF3d19358.979Drosophila_melanogaster
ENSMUSG00000016554Eif3d10097.633ENSETEG00000002070-9982.150Echinops_telfairi
ENSMUSG00000016554Eif3d6684.573ENSETEG00000016315-8184.573Echinops_telfairi
ENSMUSG00000016554Eif3d8584.636ENSETEG00000009404-9684.636Echinops_telfairi
ENSMUSG00000016554Eif3d6455.556ENSETEG00000020233-7381.166Echinops_telfairi
ENSMUSG00000016554Eif3d8877.226ENSEBUG00000009405eif3d9381.772Eptatretus_burgeri
ENSMUSG00000016554Eif3d10099.408ENSEASG00005018906EIF3D10099.088Equus_asinus_asinus
ENSMUSG00000016554Eif3d10098.817ENSECAG00000022413EIF3D10098.540Equus_caballus
ENSMUSG00000016554Eif3d10088.686ENSEEUG00000015771EIF3D10088.686Erinaceus_europaeus
ENSMUSG00000016554Eif3d10092.353ENSELUG00000018698eif3d9692.264Esox_lucius
ENSMUSG00000016554Eif3d10099.408ENSFCAG00000001131EIF3D10099.088Felis_catus
ENSMUSG00000016554Eif3d10094.706ENSFALG00000013012EIF3D9795.660Ficedula_albicollis
ENSMUSG00000016554Eif3d10098.905ENSFDAG00000004352EIF3D10098.905Fukomys_damarensis
ENSMUSG00000016554Eif3d10092.941ENSGMOG00000013341eif3d9790.566Gadus_morhua
ENSMUSG00000016554Eif3d10095.294ENSGALG00000012529EIF3D9795.849Gallus_gallus
ENSMUSG00000016554Eif3d10093.529ENSGACG00000014538eif3d9791.509Gasterosteus_aculeatus
ENSMUSG00000016554Eif3d10097.041ENSGAGG00000009617EIF3D9796.597Gopherus_agassizii
ENSMUSG00000016554Eif3d10098.905ENSGGOG00000003428EIF3D10098.905Gorilla_gorilla
ENSMUSG00000016554Eif3d10093.605ENSHBUG00000017230eif3d9892.263Haplochromis_burtoni
ENSMUSG00000016554Eif3d9687.037ENSHGLG00000000135-9678.450Heterocephalus_glaber_female
ENSMUSG00000016554Eif3d10084.024ENSHGLG00000006449-9883.554Heterocephalus_glaber_female
ENSMUSG00000016554Eif3d10099.088ENSHGLG00000016422-10099.088Heterocephalus_glaber_female
ENSMUSG00000016554Eif3d10099.088ENSHGLG00100007477-10099.088Heterocephalus_glaber_male
ENSMUSG00000016554Eif3d9687.037ENSHGLG00100001321-9682.987Heterocephalus_glaber_male
ENSMUSG00000016554Eif3d10084.024ENSHGLG00100013710-9883.365Heterocephalus_glaber_male
ENSMUSG00000016554Eif3d10092.941ENSHCOG00000007799eif3d9692.264Hippocampus_comes
ENSMUSG00000016554Eif3d10093.529ENSIPUG00000017267eif3d9691.165Ictalurus_punctatus
ENSMUSG00000016554Eif3d10099.408ENSSTOG00000011335EIF3D10099.270Ictidomys_tridecemlineatus
ENSMUSG00000016554Eif3d100100.000ENSJJAG00000010854Eif3d10099.453Jaculus_jaculus
ENSMUSG00000016554Eif3d10093.023ENSKMAG00000007133eif3d9692.669Kryptolebias_marmoratus
ENSMUSG00000016554Eif3d10094.118ENSLBEG00000005296eif3d9692.453Labrus_bergylta
ENSMUSG00000016554Eif3d9788.534ENSLACG00000001606EIF3D9588.534Latimeria_chalumnae
ENSMUSG00000016554Eif3d10099.408ENSLAFG00000001714EIF3D10096.715Loxodonta_africana
ENSMUSG00000016554Eif3d10098.905ENSMFAG00000000481EIF3D10098.905Macaca_fascicularis
ENSMUSG00000016554Eif3d10098.905ENSMMUG00000012754EIF3D10098.905Macaca_mulatta
ENSMUSG00000016554Eif3d10098.905ENSMNEG00000012843EIF3D10098.905Macaca_nemestrina
ENSMUSG00000016554Eif3d10098.905ENSMLEG00000037251EIF3D10098.905Mandrillus_leucophaeus
ENSMUSG00000016554Eif3d10093.529ENSMAMG00000020219eif3d9692.642Mastacembelus_armatus
ENSMUSG00000016554Eif3d10093.605ENSMZEG00005023294eif3d9792.481Maylandia_zebra
ENSMUSG00000016554Eif3d9787.992ENSMZEG00005024006eif3d9687.992Maylandia_zebra
ENSMUSG00000016554Eif3d10095.858ENSMGAG00000012653EIF3D10096.271Meleagris_gallopavo
ENSMUSG00000016554Eif3d100100.000ENSMAUG00000013161Eif3d100100.000Mesocricetus_auratus
ENSMUSG00000016554Eif3d10099.408ENSMICG00000012161EIF3D10099.088Microcebus_murinus
ENSMUSG00000016554Eif3d100100.000ENSMOCG00000011605Eif3d10099.818Microtus_ochrogaster
ENSMUSG00000016554Eif3d10093.529ENSMMOG00000021496eif3d9692.453Mola_mola
ENSMUSG00000016554Eif3d10098.225ENSMODG00000000821EIF3D9997.619Monodelphis_domestica
ENSMUSG00000016554Eif3d10091.860ENSMALG00000019436eif3d9692.669Monopterus_albus
ENSMUSG00000016554Eif3d100100.000MGP_CAROLIEiJ_G0019973Eif3d100100.000Mus_caroli
ENSMUSG00000016554Eif3d10099.818MGP_PahariEiJ_G0019975Eif3d10099.818Mus_pahari
ENSMUSG00000016554Eif3d100100.000MGP_SPRETEiJ_G0020871Eif3d100100.000Mus_spretus
ENSMUSG00000016554Eif3d8161.947ENSMPUG00000012581EIF3D10061.947Mustela_putorius_furo
ENSMUSG00000016554Eif3d10098.905ENSMLUG00000015857EIF3D10098.905Myotis_lucifugus
ENSMUSG00000016554Eif3d10099.270ENSNGAG00000012038Eif3d10099.270Nannospalax_galili
ENSMUSG00000016554Eif3d10098.905ENSNLEG00000014560EIF3D10098.905Nomascus_leucogenys
ENSMUSG00000016554Eif3d10098.225ENSMEUG00000004561EIF3D9997.974Notamacropus_eugenii
ENSMUSG00000016554Eif3d9092.464ENSOPRG00000006924EIF3D10092.464Ochotona_princeps
ENSMUSG00000016554Eif3d10098.905ENSODEG00000011039EIF3D10098.905Octodon_degus
ENSMUSG00000016554Eif3d10094.706ENSONIG00000009713eif3d9693.019Oreochromis_niloticus
ENSMUSG00000016554Eif3d10097.041ENSOANG00000007483EIF3D9985.478Ornithorhynchus_anatinus
ENSMUSG00000016554Eif3d10098.817ENSOCUG00000006363EIF3D10098.723Oryctolagus_cuniculus
ENSMUSG00000016554Eif3d10088.757ENSORLG00000001449eif3d9691.321Oryzias_latipes
ENSMUSG00000016554Eif3d10091.279ENSORLG00020000383eif3d9592.293Oryzias_latipes_hni
ENSMUSG00000016554Eif3d10088.757ENSORLG00020013943eif3d9988.737Oryzias_latipes_hni
ENSMUSG00000016554Eif3d10088.757ENSORLG00015006954eif3d9987.000Oryzias_latipes_hsok
ENSMUSG00000016554Eif3d10092.899ENSORLG00015006930eif3d9092.657Oryzias_latipes_hsok
ENSMUSG00000016554Eif3d10085.799ENSOMEG00000017372eif3d9587.762Oryzias_melastigma
ENSMUSG00000016554Eif3d10086.982ENSOMEG00000017337eif3d9588.462Oryzias_melastigma
ENSMUSG00000016554Eif3d10098.723ENSOGAG00000002978EIF3D10098.723Otolemur_garnettii
ENSMUSG00000016554Eif3d10099.408ENSOARG00000018926EIF3D10098.905Ovis_aries
ENSMUSG00000016554Eif3d10098.905ENSPPAG00000031183EIF3D10098.905Pan_paniscus
ENSMUSG00000016554Eif3d10099.408ENSPPRG00000007244EIF3D10099.088Panthera_pardus
ENSMUSG00000016554Eif3d10099.408ENSPTIG00000012272EIF3D10097.993Panthera_tigris_altaica
ENSMUSG00000016554Eif3d10098.905ENSPTRG00000014313EIF3D10098.905Pan_troglodytes
ENSMUSG00000016554Eif3d10098.905ENSPANG00000023980EIF3D10098.905Papio_anubis
ENSMUSG00000016554Eif3d10093.529ENSPKIG00000013892eif3d9693.208Paramormyrops_kingsleyae
ENSMUSG00000016554Eif3d10097.041ENSPSIG00000010983EIF3D9796.597Pelodiscus_sinensis
ENSMUSG00000016554Eif3d9893.333ENSPMGG00000004524eif3d9888.327Periophthalmus_magnuspinnatus
ENSMUSG00000016554Eif3d100100.000ENSPEMG00000014069Eif3d100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000016554Eif3d10076.301ENSPMAG00000008165eif3d9781.379Petromyzon_marinus
ENSMUSG00000016554Eif3d10098.225ENSPCIG00000021563EIF3D9997.985Phascolarctos_cinereus
ENSMUSG00000016554Eif3d10092.442ENSPFOG00000007516eif3d9692.481Poecilia_formosa
ENSMUSG00000016554Eif3d10093.529ENSPLAG00000015253eif3d9692.481Poecilia_latipinna
ENSMUSG00000016554Eif3d10092.442ENSPMEG00000019987eif3d9692.293Poecilia_mexicana
ENSMUSG00000016554Eif3d10098.225ENSPPYG00000011774EIF3D9791.115Pongo_abelii
ENSMUSG00000016554Eif3d10099.408ENSPCAG00000007788EIF3D8798.182Procavia_capensis
ENSMUSG00000016554Eif3d10094.526ENSPCOG00000014552EIF3D10094.526Propithecus_coquereli
ENSMUSG00000016554Eif3d10099.408ENSPVAG00000002014EIF3D10099.088Pteropus_vampyrus
ENSMUSG00000016554Eif3d10093.605ENSPNYG00000011917eif3d9792.293Pundamilia_nyererei
ENSMUSG00000016554Eif3d10091.860ENSPNAG00000000176eif3d9691.541Pygocentrus_nattereri
ENSMUSG00000016554Eif3d100100.000ENSRNOG00000005804Eif3d100100.000Rattus_norvegicus
ENSMUSG00000016554Eif3d10098.905ENSRBIG00000041563EIF3D10098.905Rhinopithecus_bieti
ENSMUSG00000016554Eif3d10098.905ENSRROG00000039588EIF3D10098.905Rhinopithecus_roxellana
ENSMUSG00000016554Eif3d10098.905ENSSBOG00000032811EIF3D10098.905Saimiri_boliviensis_boliviensis
ENSMUSG00000016554Eif3d10098.225ENSSHAG00000011209EIF3D9997.436Sarcophilus_harrisii
ENSMUSG00000016554Eif3d10093.605ENSSFOG00015023800eif3d9693.233Scleropages_formosus
ENSMUSG00000016554Eif3d10093.529ENSSMAG00000013962eif3d9692.075Scophthalmus_maximus
ENSMUSG00000016554Eif3d10093.023ENSSDUG00000023224eif3d9692.481Seriola_dumerili
ENSMUSG00000016554Eif3d10094.118ENSSLDG00000006833eif3d9692.481Seriola_lalandi_dorsalis
ENSMUSG00000016554Eif3d8987.064ENSSARG00000012488EIF3D10087.064Sorex_araneus
ENSMUSG00000016554Eif3d10097.041ENSSPUG00000011683EIF3D9795.841Sphenodon_punctatus
ENSMUSG00000016554Eif3d10093.023ENSSPAG00000003591eif3d9692.293Stegastes_partitus
ENSMUSG00000016554Eif3d10099.408ENSSSCG00000000141EIF3D10099.088Sus_scrofa
ENSMUSG00000016554Eif3d10094.118ENSTGUG00000010728EIF3D9795.472Taeniopygia_guttata
ENSMUSG00000016554Eif3d10092.442ENSTRUG00000007886eif3d9691.353Takifugu_rubripes
ENSMUSG00000016554Eif3d10091.279ENSTNIG00000011263eif3d9691.881Tetraodon_nigroviridis
ENSMUSG00000016554Eif3d9398.619ENSTBEG00000006268EIF3D10098.619Tupaia_belangeri
ENSMUSG00000016554Eif3d10098.817ENSTTRG00000006637EIF3D10098.175Tursiops_truncatus
ENSMUSG00000016554Eif3d10099.408ENSUAMG00000017485EIF3D9999.081Ursus_americanus
ENSMUSG00000016554Eif3d10099.408ENSUMAG00000015827EIF3D10099.088Ursus_maritimus
ENSMUSG00000016554Eif3d6699.107ENSVPAG00000000359-10093.056Vicugna_pacos
ENSMUSG00000016554Eif3d10099.408ENSVVUG00000023578EIF3D10099.088Vulpes_vulpes
ENSMUSG00000016554Eif3d10089.535ENSXETG00000027259eif3d9690.414Xenopus_tropicalis
ENSMUSG00000016554Eif3d9784.211ENSXCOG00000011633eif3d9784.211Xiphophorus_couchianus
ENSMUSG00000016554Eif3d10092.442ENSXMAG00000000954eif3d9692.105Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001732formation of cytoplasmic translation initiation complex17581632.IDAProcess
GO:0002191cap-dependent translational initiation-ISOProcess
GO:0003723RNA binding-ISOFunction
GO:0003743translation initiation factor activity21873635.IBAFunction
GO:0003743translation initiation factor activity17581632.IDAFunction
GO:0003743translation initiation factor activity-ISOFunction
GO:0005737cytoplasm-IEAComponent
GO:0005852eukaryotic translation initiation factor 3 complex21873635.IBAComponent
GO:0005852eukaryotic translation initiation factor 3 complex17581632.IDAComponent
GO:0005852eukaryotic translation initiation factor 3 complex-ISOComponent
GO:0006412translation-IEAProcess
GO:0006413translational initiation21873635.IBAProcess
GO:0006413translational initiation-ISOProcess
GO:0045727positive regulation of translation-ISOProcess
GO:0071541eukaryotic translation initiation factor 3 complex, eIF3m24003236.IDAComponent
GO:0075522IRES-dependent viral translational initiation-ISOProcess
GO:0075525viral translational termination-reinitiation-ISOProcess
GO:0098808mRNA cap binding-ISOFunction
GO:1902416positive regulation of mRNA binding-ISOProcess

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