EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000106454	-	2514	XM_006532248	ENSMUSP00000102062	136 (aa)	XP_006532311	P84244
ENSMUST00000139623	-	874	-	-	- (aa)	-	-
ENSMUST00000016703	-	1993	-	ENSMUSP00000016703	136 (aa)	-	P84244
ENSMUST00000139378	-	773	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu05034	Alcoholism	KEGG
mmu05202	Transcriptional misregulation in cancer	KEGG
mmu05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000016559	H3f3b	100	93.382	WBGene00012276	his-74	100	93.382	Caenorhabditis_elegans

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000228	nuclear chromosome	-	ISO	Component
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0000786	nucleosome	-	ISO	Component
GO:0000788	nuclear nucleosome	-	ISO	Component
GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	-	ISO	Function
GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding	-	ISO	Function
GO:0001649	osteoblast differentiation	22705305.	IGI	Process
GO:0005634	nucleus	23570311.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0006997	nucleus organization	23570311.	IMP	Process
GO:0007283	spermatogenesis	25675407.	IMP	Process
GO:0007286	spermatid development	25675407.	IMP	Process
GO:0007338	single fertilization	25675407.	IMP	Process
GO:0007566	embryo implantation	7534202.	IMP	Process
GO:0008283	cell proliferation	26159997.	IGI	Process
GO:0008584	male gonad development	25675407.	IMP	Process
GO:0031492	nucleosomal DNA binding	-	ISO	Function
GO:0031508	pericentric heterochromatin assembly	26159997.	IGI	Process
GO:0031509	telomeric heterochromatin assembly	26159997.	IGI	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0035264	multicellular organism growth	25675407.	IMP	Process
GO:0042692	muscle cell differentiation	22705305.	IGI	Process
GO:0048477	oogenesis	25675407.	IGI	Process
GO:0090230	regulation of centromere complex assembly	23570311.	IMP	Process
GO:1902340	negative regulation of chromosome condensation	23903189.	IGI	Process