EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000016619 (Gene tree)
Gene ID: 18141
Gene Symbol: Nup50
Alias: 1700030K07Rik|Npap60
Full Name: nucleoporin 50
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 19553
Position: chr15: 84923411-84942963
Accession: 1351502
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000230411	-	1900	-	ENSMUSP00000155656	466 (aa)	-	Q9JIH2
ENSMUST00000165443	-	4766	-	ENSMUSP00000131457	466 (aa)	-	Q9JIH2

Gene Model

Click here to download ENSMUSG00000016619's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000016619's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000016619	Nup50	72	54.839	FBgn0033264	Nup50	66	55.814	Drosophila_melanogaster
ENSMUSG00000016619	Nup50	100	77.447	ENSG00000093000	NUP50	100	95.312	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001841	neural tube formation	10891500.	IMP	Process
GO:0005096	GTPase activator activity	21873635.	IBA	Function
GO:0005515	protein binding	10891500.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005643	nuclear pore	21873635.	IBA	Component
GO:0005643	nuclear pore	10891500.	IDA	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0008536	Ran GTPase binding	21873635.	IBA	Function
GO:0031965	nuclear membrane	-	ISO	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:1990904	ribonucleoprotein complex	18809582.	ISO	Component