EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000016664 (Gene tree)
Gene ID: 23970
Gene Symbol: Pacsin2
Alias: Syndapin II
Full Name: protein kinase C and casein kinase substrate in neurons 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 89000
Position: chr15: 83375607-83464606
Accession: 1345153
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000171436	-	3693	XM_006520979	ENSMUSP00000131504	486 (aa)	XP_011243935	Q9WVE8
ENSMUST00000230679	-	3083	-	ENSMUSP00000155481	486 (aa)	-	Q9WVE8
ENSMUST00000230960	-	639	-	-	- (aa)	-	-
ENSMUST00000230030	-	857	-	ENSMUSP00000155333	272 (aa)	-	A0A2R8W6S4
ENSMUST00000229337	-	640	-	ENSMUSP00000155845	124 (aa)	-	A0A2R8W750
ENSMUST00000056177	-	2795	-	ENSMUSP00000058320	486 (aa)	-	Q9WVE8
ENSMUST00000231043	-	635	-	-	- (aa)	-	-
ENSMUST00000231946	-	823	-	ENSMUSP00000155925	180 (aa)	-	UPI000DE7D05C
ENSMUST00000165095	-	3186	XM_006520980	ENSMUSP00000130098	486 (aa)	XP_006521043	Q9WVE8
ENSMUST00000231184	-	3103	XM_006520981	ENSMUSP00000155334	486 (aa)	XP_006521044	Q9WVE8
ENSMUST00000230816	-	765	-	ENSMUSP00000155068	191 (aa)	-	Q3UP40

Gene Model

Click here to download ENSMUSG00000016664's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000016664's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	11082044.	IPI	Function
GO:0005543	phospholipid binding	21873635.	IBA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	11082044.	IDA	Component
GO:0005768	endosome	-	IEA	Component
GO:0005802	trans-Golgi network	11082044.	IDA	Component
GO:0005829	cytosol	10431838.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	21873635.	IBA	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005901	caveola	21610094.	IDA	Component
GO:0005901	caveola	24013648.	ISO	Component
GO:0005911	cell-cell junction	23793062.	IDA	Component
GO:0006897	endocytosis	-	IEA	Process
GO:0007010	cytoskeleton organization	21873635.	IBA	Process
GO:0007165	signal transduction	10431838.	TAS	Process
GO:0008092	cytoskeletal protein binding	21873635.	IBA	Function
GO:0008092	cytoskeletal protein binding	11082044.	IDA	Function
GO:0008289	lipid binding	20188097.	IDA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0019898	extrinsic component of membrane	20188097.	IDA	Component
GO:0030036	actin cytoskeleton organization	-	IEA	Process
GO:0031410	cytoplasmic vesicle	-	IEA	Component
GO:0036010	protein localization to endosome	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042995	cell projection	-	IEA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045806	negative regulation of endocytosis	11082044.	IDA	Process
GO:0048858	cell projection morphogenesis	20188097.	IMP	Process
GO:0050804	modulation of chemical synaptic transmission	23918399.	IDA	Process
GO:0050804	modulation of chemical synaptic transmission	23918399.	IMP	Process
GO:0055038	recycling endosome membrane	-	ISO	Component
GO:0070300	phosphatidic acid binding	-	ISO	Function
GO:0070836	caveola assembly	-	ISO	Process
GO:0072584	caveolin-mediated endocytosis	-	ISO	Process
GO:0097320	plasma membrane tubulation	21873635.	IBA	Process
GO:0097320	plasma membrane tubulation	20188097.	IMP	Process
GO:0097320	plasma membrane tubulation	-	ISO	Process
GO:0098978	glutamatergic synapse	23918399.	IDA	Component
GO:0098978	glutamatergic synapse	23918399.	IMP	Component