EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000016921 (Gene tree)
Gene ID
67996
Gene Symbol
Srsf6
Alias
1210001E11Rik|Sfrs6
Full Name
serine/arginine-rich splicing factor 6
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
5594 bases
Position
chr2:162931528-162937121
Accession
1915246
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000119065RRM_1PF00076.221.1e-3112
ENSMUSP00000119065RRM_1PF00076.221.1e-3122
ENSMUSP00000141349RRM_1PF00076.222.6e-1611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000126163-515-ENSMUSP00000141349135 (aa)-A0A0A6YXX6
ENSMUST00000017065-1666-ENSMUSP00000142183135 (aa)-A0A0A6YXX6
ENSMUST00000193611-2897--- (aa)--
ENSMUST00000130411-3527-ENSMUSP00000119065339 (aa)-Q3TWW8
Gene Model
Click here to download ENSMUSG00000016921's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
mmu05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000016921's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000016921Srsf66131.868ENSMUSG00000045193Cirbp8431.868
ENSMUSG00000016921Srsf65332.877ENSMUSG00000039717Ralyl7335.484
ENSMUSG00000016921Srsf65645.570ENSMUSG00000024097Srsf75845.570
ENSMUSG00000016921Srsf65634.667ENSMUSG00000094936Rbm45234.667
ENSMUSG00000016921Srsf65335.443ENSMUSG00000031134Rbmx7735.443
ENSMUSG00000016921Srsf65840.670ENSMUSG00000018379Srsf18242.857
ENSMUSG00000016921Srsf65147.297ENSMUSG00000029538Srsf97038.674
ENSMUSG00000016921Srsf65644.304ENSMUSG00000071172Srsf36444.304
ENSMUSG00000016921Srsf65071.642ENSMUSG00000021134Srsf58963.415
ENSMUSG00000016921Srsf65635.526ENSMUSG00000027593Raly5435.526
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000016921Srsf610098.519ENSG00000124193SRSF610098.519Homo_sapiens
ENSMUSG00000016921Srsf65893.590ENSAPOG00000016635-8481.618Acanthochromis_polyacanthus
ENSMUSG00000016921Srsf69585.231ENSAMEG00000003710SRSF69484.877Ailuropoda_melanoleuca
ENSMUSG00000016921Srsf68768.581ENSACIG00000023658-5687.778Amphilophus_citrinellus
ENSMUSG00000016921Srsf66387.059ENSACIG00000020091-9580.315Amphilophus_citrinellus
ENSMUSG00000016921Srsf69267.939ENSAOCG00000019438-9867.939Amphiprion_ocellaris
ENSMUSG00000016921Srsf66582.955ENSAOCG00000004309-5783.152Amphiprion_ocellaris
ENSMUSG00000016921Srsf66384.706ENSAPEG00000020746-6679.787Amphiprion_percula
ENSMUSG00000016921Srsf69861.871ENSAPEG00000013086-5388.172Amphiprion_percula
ENSMUSG00000016921Srsf66683.146ENSATEG00000007255-5480.978Anabas_testudineus
ENSMUSG00000016921Srsf610082.029ENSACAG00000002061SRSF69883.188Anolis_carolinensis
ENSMUSG00000016921Srsf610098.519ENSANAG00000024080SRSF610098.519Aotus_nancymaae
ENSMUSG00000016921Srsf65489.041ENSACLG00000024373-9679.570Astatotilapia_calliptera
ENSMUSG00000016921Srsf65591.892ENSAMXG00000042692-9678.519Astyanax_mexicanus
ENSMUSG00000016921Srsf65590.541ENSAMXG00000003101-5184.737Astyanax_mexicanus
ENSMUSG00000016921Srsf610099.259ENSBTAG00000008527SRSF610099.259Bos_taurus
ENSMUSG00000016921Srsf610098.519ENSCJAG00000048403SRSF610098.519Callithrix_jacchus
ENSMUSG00000016921Srsf610099.259ENSCAFG00000009289SRSF610099.259Canis_familiaris
ENSMUSG00000016921Srsf610099.259ENSCAFG00020013559SRSF610099.259Canis_lupus_dingo
ENSMUSG00000016921Srsf69596.296ENSCHIG00000009148-9496.296Capra_hircus
ENSMUSG00000016921Srsf610099.259ENSCHIG00000015890-10099.259Capra_hircus
ENSMUSG00000016921Srsf69480.435ENSTSYG00000026476SRSF69378.086Carlito_syrichta
ENSMUSG00000016921Srsf610098.519ENSCPOG00000011761SRSF610098.519Cavia_porcellus
ENSMUSG00000016921Srsf69566.967ENSCCAG00000018540-6287.234Cebus_capucinus
ENSMUSG00000016921Srsf610098.519ENSCCAG00000026018-10098.519Cebus_capucinus
ENSMUSG00000016921Srsf610098.519ENSCATG00000030794SRSF610098.519Cercocebus_atys
ENSMUSG00000016921Srsf610098.519ENSCLAG00000010247SRSF610098.519Chinchilla_lanigera
ENSMUSG00000016921Srsf69997.041ENSCSAG00000014022SRSF69997.041Chlorocebus_sabaeus
ENSMUSG00000016921Srsf67997.222ENSCHOG00000000561SRSF67797.222Choloepus_hoffmanni
ENSMUSG00000016921Srsf65894.872ENSCPBG00000018200SRSF69484.404Chrysemys_picta_bellii
ENSMUSG00000016921Srsf69996.746ENSCANG00000037774-9996.746Colobus_angolensis_palliatus
ENSMUSG00000016921Srsf69982.544ENSCANG00000042529-9882.544Colobus_angolensis_palliatus
ENSMUSG00000016921Srsf6100100.000ENSCGRG00001022339Srsf6100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000016921Srsf66299.048ENSCGRG00000006618Srsf610099.048Cricetulus_griseus_crigri
ENSMUSG00000016921Srsf65893.590ENSCSEG00000019778SRSF69084.252Cynoglossus_semilaevis
ENSMUSG00000016921Srsf65892.308ENSCVAG00000001863SRSF69585.039Cyprinodon_variegatus
ENSMUSG00000016921Srsf65590.541ENSDARG00000016783srsf6b8789.157Danio_rerio
ENSMUSG00000016921Srsf69595.679ENSDNOG00000008410SRSF69495.679Dasypus_novemcinctus
ENSMUSG00000016921Srsf610098.519ENSDORG00000028378Srsf610098.519Dipodomys_ordii
ENSMUSG00000016921Srsf69491.875ENSETEG00000006221SRSF69489.506Echinops_telfairi
ENSMUSG00000016921Srsf69595.062ENSEASG00005023429SRSF69495.988Equus_asinus_asinus
ENSMUSG00000016921Srsf69595.062ENSECAG00000023932SRSF69495.988Equus_caballus
ENSMUSG00000016921Srsf65792.821ENSEEUG00000002324SRSF69093.401Erinaceus_europaeus
ENSMUSG00000016921Srsf67377.778ENSELUG00000013506SRSF68877.778Esox_lucius
ENSMUSG00000016921Srsf69859.286ENSELUG00000024182SRSF68587.356Esox_lucius
ENSMUSG00000016921Srsf69596.605ENSFCAG00000032814SRSF69496.285Felis_catus
ENSMUSG00000016921Srsf69580.556ENSFDAG00000012191SRSF69378.086Fukomys_damarensis
ENSMUSG00000016921Srsf68871.287ENSFHEG00000023065srsf6a5587.500Fundulus_heteroclitus
ENSMUSG00000016921Srsf66176.829ENSGMOG00000006105srsf6a6270.391Gadus_morhua
ENSMUSG00000016921Srsf65688.158ENSGMOG00000014458srsf6a5277.604Gadus_morhua
ENSMUSG00000016921Srsf610095.556ENSGALG00000000990SRSF610095.556Gallus_gallus
ENSMUSG00000016921Srsf65892.308ENSGAFG00000019088-7282.400Gambusia_affinis
ENSMUSG00000016921Srsf69861.194ENSGACG00000006084srsf6a5383.871Gasterosteus_aculeatus
ENSMUSG00000016921Srsf65894.872ENSGAGG00000003238SRSF69484.404Gopherus_agassizii
ENSMUSG00000016921Srsf610098.519ENSGGOG00000009808SRSF610098.519Gorilla_gorilla
ENSMUSG00000016921Srsf610059.538ENSHBUG00000006386-5883.696Haplochromis_burtoni
ENSMUSG00000016921Srsf610098.519ENSHGLG00000007348SRSF610098.519Heterocephalus_glaber_female
ENSMUSG00000016921Srsf69175.728ENSHGLG00000007701-5878.610Heterocephalus_glaber_female
ENSMUSG00000016921Srsf69580.864ENSHGLG00100005043SRSF69378.395Heterocephalus_glaber_male
ENSMUSG00000016921Srsf65887.179ENSHCOG00000002740srsf6a5782.065Hippocampus_comes
ENSMUSG00000016921Srsf65892.308ENSIPUG00000004776-7272.103Ictalurus_punctatus
ENSMUSG00000016921Srsf610098.519ENSSTOG00000010866SRSF610098.519Ictidomys_tridecemlineatus
ENSMUSG00000016921Srsf65696.335ENSJJAG00000020690Srsf69196.373Jaculus_jaculus
ENSMUSG00000016921Srsf65493.151ENSKMAG00000011934srsf6a5985.870Kryptolebias_marmoratus
ENSMUSG00000016921Srsf65892.308ENSLBEG00000007356srsf6a5285.484Labrus_bergylta
ENSMUSG00000016921Srsf610078.409ENSLACG00000005466SRSF610074.269Latimeria_chalumnae
ENSMUSG00000016921Srsf67093.724ENSLAFG00000006682SRSF68993.886Loxodonta_africana
ENSMUSG00000016921Srsf610098.519ENSMFAG00000036925SRSF610098.519Macaca_fascicularis
ENSMUSG00000016921Srsf610098.519ENSMMUG00000006742SRSF610098.519Macaca_mulatta
ENSMUSG00000016921Srsf69496.250ENSMNEG00000038270-9496.273Macaca_nemestrina
ENSMUSG00000016921Srsf610097.037ENSMNEG00000027392-10097.037Macaca_nemestrina
ENSMUSG00000016921Srsf65796.891ENSMLEG00000031524SRSF69096.891Mandrillus_leucophaeus
ENSMUSG00000016921Srsf66387.059ENSMAMG00000023477-8987.059Mastacembelus_armatus
ENSMUSG00000016921Srsf69861.871ENSMAMG00000017161srsf6a5387.634Mastacembelus_armatus
ENSMUSG00000016921Srsf65689.474ENSMZEG00005008032-5783.696Maylandia_zebra
ENSMUSG00000016921Srsf69858.333ENSMZEG00005020658-6082.873Maylandia_zebra
ENSMUSG00000016921Srsf6100100.000ENSMAUG00000019086-100100.000Mesocricetus_auratus
ENSMUSG00000016921Srsf610098.519ENSMICG00000008537SRSF610098.519Microcebus_murinus
ENSMUSG00000016921Srsf66299.048ENSMOCG00000018738Srsf610099.048Microtus_ochrogaster
ENSMUSG00000016921Srsf65892.308ENSMMOG00000015241-7890.361Mola_mola
ENSMUSG00000016921Srsf65894.872ENSMODG00000003107SRSF69586.997Monodelphis_domestica
ENSMUSG00000016921Srsf6100100.000MGP_CAROLIEiJ_G0024606Srsf6100100.000Mus_caroli
ENSMUSG00000016921Srsf6100100.000MGP_PahariEiJ_G0026050Srsf6100100.000Mus_pahari
ENSMUSG00000016921Srsf6100100.000MGP_SPRETEiJ_G0025528Srsf6100100.000Mus_spretus
ENSMUSG00000016921Srsf68496.516ENSMPUG00000017692SRSF69996.516Mustela_putorius_furo
ENSMUSG00000016921Srsf69480.435ENSMLUG00000016618SRSF69480.556Myotis_lucifugus
ENSMUSG00000016921Srsf610098.519ENSNGAG00000017560Srsf610098.519Nannospalax_galili
ENSMUSG00000016921Srsf65689.474ENSNBRG00000014709-5883.696Neolamprologus_brichardi
ENSMUSG00000016921Srsf69861.871ENSNBRG00000001846-5287.634Neolamprologus_brichardi
ENSMUSG00000016921Srsf610098.519ENSNLEG00000006524SRSF610098.519Nomascus_leucogenys
ENSMUSG00000016921Srsf65894.872ENSMEUG00000014615SRSF66295.745Notamacropus_eugenii
ENSMUSG00000016921Srsf67094.979ENSOPRG00000002017-8995.197Ochotona_princeps
ENSMUSG00000016921Srsf610098.519ENSODEG00000016510-10098.519Octodon_degus
ENSMUSG00000016921Srsf65893.590ENSONIG00000001925-6672.766Oreochromis_niloticus
ENSMUSG00000016921Srsf66186.585ENSONIG00000020247-5384.239Oreochromis_niloticus
ENSMUSG00000016921Srsf69839.865ENSOCUG00000009785-6476.804Oryctolagus_cuniculus
ENSMUSG00000016921Srsf67557.874ENSOCUG00000023999-7063.128Oryctolagus_cuniculus
ENSMUSG00000016921Srsf65892.308ENSORLG00020017506srsf6a9069.032Oryzias_latipes_hni
ENSMUSG00000016921Srsf69595.077ENSOGAG00000014468SRSF69495.370Otolemur_garnettii
ENSMUSG00000016921Srsf69493.168ENSOARG00000003117SRSF69493.210Ovis_aries
ENSMUSG00000016921Srsf69184.466ENSPPAG00000043131-10086.731Pan_paniscus
ENSMUSG00000016921Srsf610095.930ENSPPAG00000034327-10095.930Pan_paniscus
ENSMUSG00000016921Srsf69596.605ENSPPRG00000008917SRSF69496.285Panthera_pardus
ENSMUSG00000016921Srsf65795.385ENSPTIG00000019153SRSF69094.845Panthera_tigris_altaica
ENSMUSG00000016921Srsf610098.519ENSPTRG00000044686-10098.519Pan_troglodytes
ENSMUSG00000016921Srsf69184.466ENSPTRG00000046274-10086.731Pan_troglodytes
ENSMUSG00000016921Srsf610098.519ENSPANG00000035224SRSF610098.519Papio_anubis
ENSMUSG00000016921Srsf65975.000ENSPKIG00000015703-9560.403Paramormyrops_kingsleyae
ENSMUSG00000016921Srsf69862.121ENSPKIG00000018463-8389.286Paramormyrops_kingsleyae
ENSMUSG00000016921Srsf65893.590ENSPKIG00000015603-8884.252Paramormyrops_kingsleyae
ENSMUSG00000016921Srsf69072.078ENSPMGG00000014963srsf6a5589.130Periophthalmus_magnuspinnatus
ENSMUSG00000016921Srsf68588.793ENSPEMG00000022405-9688.793Peromyscus_maniculatus_bairdii
ENSMUSG00000016921Srsf610097.037ENSPCIG00000003820SRSF610097.037Phascolarctos_cinereus
ENSMUSG00000016921Srsf65892.308ENSPFOG00000006437srsf6a5083.158Poecilia_formosa
ENSMUSG00000016921Srsf65892.308ENSPLAG00000009243srsf6a8082.677Poecilia_latipinna
ENSMUSG00000016921Srsf65892.308ENSPMEG00000006042SRSF65487.027Poecilia_mexicana
ENSMUSG00000016921Srsf65892.308ENSPREG00000001040srsf6a8783.846Poecilia_reticulata
ENSMUSG00000016921Srsf610096.221ENSPPYG00000011019SRSF610096.221Pongo_abelii
ENSMUSG00000016921Srsf65896.154ENSPCAG00000010954SRSF69691.615Procavia_capensis
ENSMUSG00000016921Srsf610098.519ENSPCOG00000026364SRSF610098.519Propithecus_coquereli
ENSMUSG00000016921Srsf69595.031ENSPVAG00000015232SRSF69495.031Pteropus_vampyrus
ENSMUSG00000016921Srsf65689.474ENSPNYG00000004944-5883.696Pundamilia_nyererei
ENSMUSG00000016921Srsf65893.590ENSPNYG00000011272-5187.634Pundamilia_nyererei
ENSMUSG00000016921Srsf66091.358ENSPNAG00000023179-9482.677Pygocentrus_nattereri
ENSMUSG00000016921Srsf6100100.000ENSRNOG00000006380Srsf6100100.000Rattus_norvegicus
ENSMUSG00000016921Srsf610094.815ENSRBIG00000041414SRSF610094.815Rhinopithecus_bieti
ENSMUSG00000016921Srsf610098.519ENSRROG00000029989SRSF610098.519Rhinopithecus_roxellana
ENSMUSG00000016921Srsf69470.219ENSSBOG00000034078-5476.796Saimiri_boliviensis_boliviensis
ENSMUSG00000016921Srsf610098.519ENSSBOG00000033708-10098.519Saimiri_boliviensis_boliviensis
ENSMUSG00000016921Srsf65894.872ENSSHAG00000012805SRSF69586.997Sarcophilus_harrisii
ENSMUSG00000016921Srsf65593.243ENSSFOG00015015169SRSF66089.130Scleropages_formosus
ENSMUSG00000016921Srsf65688.158ENSSMAG00000017447-5579.891Scophthalmus_maximus
ENSMUSG00000016921Srsf65990.000ENSSMAG00000014861-9566.406Scophthalmus_maximus
ENSMUSG00000016921Srsf66387.059ENSSDUG00000011036-9087.059Seriola_dumerili
ENSMUSG00000016921Srsf69861.151ENSSDUG00000016097srsf6a5387.634Seriola_dumerili
ENSMUSG00000016921Srsf66387.059ENSSLDG00000014858-9087.059Seriola_lalandi_dorsalis
ENSMUSG00000016921Srsf69861.871ENSSLDG00000022841srsf6a5487.634Seriola_lalandi_dorsalis
ENSMUSG00000016921Srsf610095.556ENSSPUG00000004967SRSF610095.556Sphenodon_punctatus
ENSMUSG00000016921Srsf69861.871ENSSPAG00000002362srsf6a6786.243Stegastes_partitus
ENSMUSG00000016921Srsf66384.706ENSSPAG00000021913-8684.706Stegastes_partitus
ENSMUSG00000016921Srsf69996.176ENSSSCG00000007362SRSF69996.176Sus_scrofa
ENSMUSG00000016921Srsf69483.282ENSTGUG00000003455SRSF69484.098Taeniopygia_guttata
ENSMUSG00000016921Srsf65992.500ENSTRUG00000021397-8792.500Takifugu_rubripes
ENSMUSG00000016921Srsf68871.096ENSTNIG00000001692srsf6a5786.022Tetraodon_nigroviridis
ENSMUSG00000016921Srsf68692.069ENSTBEG00000013448SRSF69292.388Tupaia_belangeri
ENSMUSG00000016921Srsf66995.745ENSTTRG00000015410SRSF68895.633Tursiops_truncatus
ENSMUSG00000016921Srsf610099.259ENSUAMG00000003559SRSF610099.259Ursus_americanus
ENSMUSG00000016921Srsf65795.385ENSUMAG00000001154SRSF69094.845Ursus_maritimus
ENSMUSG00000016921Srsf676100.000ENSVPAG00000003016SRSF674100.000Vicugna_pacos
ENSMUSG00000016921Srsf610079.259ENSVVUG00000019276-10079.259Vulpes_vulpes
ENSMUSG00000016921Srsf65892.308ENSXMAG00000021849srsf6a5586.413Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000380alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000380alternative mRNA splicing, via spliceosome-ISOProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome23132731.ISOProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-ISOFunction
GO:0005515protein binding26581985.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0006376mRNA splice site selection21873635.IBAProcess
GO:0006376mRNA splice site selection-ISOProcess
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0010629negative regulation of gene expression-ISOProcess
GO:0010837regulation of keratinocyte proliferation-ISOProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0016607nuclear speck-ISOComponent
GO:0036002pre-mRNA binding21873635.IBAFunction
GO:0036002pre-mRNA binding-ISOFunction
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess
GO:0045617negative regulation of keratinocyte differentiation-ISOProcess
GO:0048025negative regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0060501positive regulation of epithelial cell proliferation involved in lung morphogenesis23132731.ISOProcess
GO:0060548negative regulation of cell death23132731.ISOProcess
GO:0061041regulation of wound healing-ISOProcess
GO:2000675negative regulation of type B pancreatic cell apoptotic process-ISOProcess

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