EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000017009 (Gene tree)
Gene ID: 20971
Gene Symbol: Sdc4
Alias: S4|Synd4|ryudocan|syndecan-4
Full Name: syndecan 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 19641
Position: chr2: 164424247-164443887
Accession: 1349164
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000017153	-	2458	-	ENSMUSP00000017153	198 (aa)	-	O35988
ENSMUST00000142909	-	797	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000017009's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04512	ECM-receptor interaction	KEGG
mmu04514	Cell adhesion molecules (CAMs)	KEGG
mmu05205	Proteoglycans in cancer	KEGG
mmu05418	Fluid shear stress and atherosclerosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000017009's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001843	neural tube closure	23760952.	IGI	Process
GO:0001968	fibronectin binding	-	ISO	Function
GO:0005080	protein kinase C binding	-	ISO	Function
GO:0005515	protein binding	25286301.	IPI	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0009986	cell surface	21873635.	IBA	Component
GO:0009986	cell surface	15381701.	IDA	Component
GO:0009986	cell surface	-	ISO	Component
GO:0010762	regulation of fibroblast migration	25074804.	IMP	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016477	cell migration	21873635.	IBA	Process
GO:0042060	wound healing	23760952.	IGI	Process
GO:0042130	negative regulation of T cell proliferation	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0043034	costamere	-	ISO	Component
GO:0045121	membrane raft	-	ISO	Component
GO:0045860	positive regulation of protein kinase activity	-	ISO	Process
GO:0051496	positive regulation of stress fiber assembly	-	ISO	Process
GO:0051894	positive regulation of focal adhesion assembly	-	ISO	Process
GO:0060122	inner ear receptor cell stereocilium organization	23760952.	IGI	Process
GO:0070053	thrombospondin receptor activity	-	ISO	Function
GO:1903543	positive regulation of exosomal secretion	-	ISO	Process
GO:1903553	positive regulation of extracellular exosome assembly	-	ISO	Process