EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000133779	-	4802	XM_017314547	ENSMUSP00000118421	417 (aa)	XP_017170036	E9PY34
ENSMUST00000135862	-	694	-	-	- (aa)	-	-
ENSMUST00000093937	-	2559	-	ENSMUSP00000091469	589 (aa)	-	A0A0R4J145
ENSMUST00000092706	-	4614	XM_017314546	ENSMUSP00000090382	562 (aa)	-	O89033

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04110	Cell cycle	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000017499	Cdc6	100	79.929	ENSG00000094804	CDC6	100	79.929	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	-	ISO	Process
GO:0000922	spindle pole	-	ISO	Component
GO:0003682	chromatin binding	14667810.	IDA	Function
GO:0003688	DNA replication origin binding	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	14667810.	IDA	Component
GO:0005819	spindle	14667810.	IDA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006270	DNA replication initiation	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0019900	kinase binding	-	ISO	Function
GO:0030071	regulation of mitotic metaphase/anaphase transition	-	ISO	Process
GO:0032467	positive regulation of cytokinesis	-	ISO	Process
GO:0033314	mitotic DNA replication checkpoint	21873635.	IBA	Process
GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity	-	ISO	Process
GO:0048146	positive regulation of fibroblast proliferation	-	ISO	Process
GO:0051233	spindle midzone	-	ISO	Component
GO:0051301	cell division	-	IEA	Process
GO:0051984	positive regulation of chromosome segregation	-	ISO	Process