EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000017999 (Gene tree)
Gene ID: 228889
Gene Symbol: Ddx27
Alias: -
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 19755 bases
Position: chr2:167015193-167034947
Accession: 2385884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000018143	ResIII	PF04851.15	2.1e-06	1	1
ENSMUSP00000018143	DEAD	PF00270.29	9.2e-45	1	1
ENSMUSP00000135265	DEAD	PF00270.29	3e-18	1	1
ENSMUSP00000135815	DEAD	PF00270.29	7.6e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000127468	-	708	-	-	- (aa)	-	-
ENSMUST00000150571	-	2151	-	ENSMUSP00000135265	292 (aa)	-	Q921N6
ENSMUST00000138969	-	649	-	-	- (aa)	-	-
ENSMUST00000126409	-	264	-	-	- (aa)	-	-
ENSMUST00000018143	-	2714	XM_006499422	ENSMUSP00000018143	760 (aa)	XP_006499485	Q921N6
ENSMUST00000176066	-	955	-	ENSMUSP00000135815	310 (aa)	-	H3BLJ6

Gene Model

Click here to download ENSMUSG00000017999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000017999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000017999	Ddx27	59	33.696	ENSMUSG00000057788	Ddx49	94	33.623
ENSMUSG00000017999	Ddx27	52	34.129	ENSMUSG00000020076	Ddx50	56	34.272
ENSMUSG00000017999	Ddx27	51	35.938	ENSMUSG00000041645	Ddx24	56	35.938
ENSMUSG00000017999	Ddx27	53	31.019	ENSMUSG00000004393	Ddx56	98	33.065
ENSMUSG00000017999	Ddx27	54	31.655	ENSMUSG00000019432	Ddx39b	99	36.424
ENSMUSG00000017999	Ddx27	53	38.221	ENSMUSG00000001674	Ddx18	61	38.462
ENSMUSG00000017999	Ddx27	56	32.558	ENSMUSG00000055065	Ddx17	77	32.381

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000017999	Ddx27	100	92.026	ENSG00000124228	DDX27	99	92.583	Homo_sapiens
ENSMUSG00000017999	Ddx27	99	69.340	ENSAPOG00000017645	ddx27	99	70.370	Acanthochromis_polyacanthus
ENSMUSG00000017999	Ddx27	99	90.331	ENSAMEG00000013627	DDX27	97	91.126	Ailuropoda_melanoleuca
ENSMUSG00000017999	Ddx27	87	78.621	ENSACIG00000014378	ddx27	96	80.105	Amphilophus_citrinellus
ENSMUSG00000017999	Ddx27	100	69.301	ENSAOCG00000021035	ddx27	99	70.542	Amphiprion_ocellaris
ENSMUSG00000017999	Ddx27	100	69.430	ENSAPEG00000022281	ddx27	99	70.542	Amphiprion_percula
ENSMUSG00000017999	Ddx27	98	68.351	ENSATEG00000010093	ddx27	99	68.218	Anabas_testudineus
ENSMUSG00000017999	Ddx27	94	77.181	ENSAPLG00000011377	DDX27	98	76.535	Anas_platyrhynchos
ENSMUSG00000017999	Ddx27	100	91.361	ENSANAG00000036257	DDX27	99	91.910	Aotus_nancymaae
ENSMUSG00000017999	Ddx27	99	70.573	ENSACLG00000014992	ddx27	99	71.447	Astatotilapia_calliptera
ENSMUSG00000017999	Ddx27	99	71.447	ENSAMXG00000000911	ddx27	99	72.418	Astyanax_mexicanus
ENSMUSG00000017999	Ddx27	100	90.980	ENSBTAG00000006671	DDX27	99	91.391	Bos_taurus
ENSMUSG00000017999	Ddx27	93	45.793	WBGene00022148	ddx-27	79	49.425	Caenorhabditis_elegans
ENSMUSG00000017999	Ddx27	100	91.492	ENSCJAG00000016135	DDX27	99	91.512	Callithrix_jacchus
ENSMUSG00000017999	Ddx27	99	91.656	ENSCAFG00000011384	DDX27	99	90.885	Canis_familiaris
ENSMUSG00000017999	Ddx27	99	91.656	ENSCAFG00020017143	DDX27	99	91.656	Canis_lupus_dingo
ENSMUSG00000017999	Ddx27	100	90.980	ENSCHIG00000007753	DDX27	99	91.656	Capra_hircus
ENSMUSG00000017999	Ddx27	100	90.980	ENSTSYG00000030362	DDX27	99	91.534	Carlito_syrichta
ENSMUSG00000017999	Ddx27	96	91.689	ENSCAPG00000010800	DDX27	99	91.425	Cavia_aperea
ENSMUSG00000017999	Ddx27	100	91.634	ENSCPOG00000002009	DDX27	99	91.391	Cavia_porcellus
ENSMUSG00000017999	Ddx27	100	91.754	ENSCCAG00000029782	DDX27	96	92.175	Cebus_capucinus
ENSMUSG00000017999	Ddx27	100	91.754	ENSCATG00000034832	DDX27	99	92.175	Cercocebus_atys
ENSMUSG00000017999	Ddx27	100	92.418	ENSCLAG00000008075	DDX27	99	92.583	Chinchilla_lanigera
ENSMUSG00000017999	Ddx27	100	92.147	ENSCSAG00000014996	DDX27	99	92.175	Chlorocebus_sabaeus
ENSMUSG00000017999	Ddx27	99	78.460	ENSCPBG00000026800	DDX27	96	78.336	Chrysemys_picta_bellii
ENSMUSG00000017999	Ddx27	74	62.679	ENSCING00000004235	-	99	54.595	Ciona_intestinalis
ENSMUSG00000017999	Ddx27	98	41.118	ENSCSAVG00000006949	-	99	63.211	Ciona_savignyi
ENSMUSG00000017999	Ddx27	100	86.780	ENSCANG00000038431	DDX27	96	87.135	Colobus_angolensis_palliatus
ENSMUSG00000017999	Ddx27	99	95.358	ENSCGRG00001015330	Ddx27	96	95.093	Cricetulus_griseus_chok1gshd
ENSMUSG00000017999	Ddx27	99	95.358	ENSCGRG00000008199	Ddx27	99	95.093	Cricetulus_griseus_crigri
ENSMUSG00000017999	Ddx27	100	69.280	ENSCSEG00000020260	ddx27	99	69.987	Cynoglossus_semilaevis
ENSMUSG00000017999	Ddx27	100	69.290	ENSCVAG00000011736	ddx27	99	69.764	Cyprinodon_variegatus
ENSMUSG00000017999	Ddx27	99	72.051	ENSDARG00000091831	ddx27	99	72.633	Danio_rerio
ENSMUSG00000017999	Ddx27	100	90.196	ENSDNOG00000019453	DDX27	95	90.993	Dasypus_novemcinctus
ENSMUSG00000017999	Ddx27	99	91.645	ENSDORG00000014137	Ddx27	99	91.512	Dipodomys_ordii
ENSMUSG00000017999	Ddx27	73	54.040	FBgn0021995	Rs1	59	63.034	Drosophila_melanogaster
ENSMUSG00000017999	Ddx27	89	75.327	ENSETEG00000018239	DDX27	85	75.110	Echinops_telfairi
ENSMUSG00000017999	Ddx27	77	72.034	ENSEBUG00000004326	ddx27	95	70.502	Eptatretus_burgeri
ENSMUSG00000017999	Ddx27	100	92.549	ENSEASG00005023342	DDX27	99	92.318	Equus_asinus_asinus
ENSMUSG00000017999	Ddx27	100	92.549	ENSECAG00000020963	DDX27	99	92.318	Equus_caballus
ENSMUSG00000017999	Ddx27	99	84.192	ENSEEUG00000012076	DDX27	68	90.244	Erinaceus_europaeus
ENSMUSG00000017999	Ddx27	99	70.573	ENSELUG00000014535	ddx27	99	71.114	Esox_lucius
ENSMUSG00000017999	Ddx27	100	91.111	ENSFCAG00000001448	DDX27	99	92.053	Felis_catus
ENSMUSG00000017999	Ddx27	93	79.860	ENSFALG00000004884	DDX27	96	79.632	Ficedula_albicollis
ENSMUSG00000017999	Ddx27	100	90.779	ENSFDAG00000018681	DDX27	99	90.789	Fukomys_damarensis
ENSMUSG00000017999	Ddx27	73	78.597	ENSFHEG00000006419	ddx27	85	81.457	Fundulus_heteroclitus
ENSMUSG00000017999	Ddx27	74	71.059	ENSGMOG00000016662	ddx27	85	72.235	Gadus_morhua
ENSMUSG00000017999	Ddx27	99	75.635	ENSGALG00000006974	DDX27	99	77.249	Gallus_gallus
ENSMUSG00000017999	Ddx27	96	69.210	ENSGAFG00000020344	ddx27	96	70.345	Gambusia_affinis
ENSMUSG00000017999	Ddx27	100	68.394	ENSGACG00000003177	ddx27	99	69.180	Gasterosteus_aculeatus
ENSMUSG00000017999	Ddx27	99	78.431	ENSGAGG00000001296	DDX27	99	78.278	Gopherus_agassizii
ENSMUSG00000017999	Ddx27	78	93.144	ENSGGOG00000015474	-	93	93.197	Gorilla_gorilla
ENSMUSG00000017999	Ddx27	99	71.108	ENSHBUG00000008119	ddx27	99	71.579	Haplochromis_burtoni
ENSMUSG00000017999	Ddx27	100	91.373	ENSHGLG00000008388	DDX27	99	91.523	Heterocephalus_glaber_female
ENSMUSG00000017999	Ddx27	100	91.373	ENSHGLG00100000130	DDX27	99	91.523	Heterocephalus_glaber_male
ENSMUSG00000017999	Ddx27	99	70.498	ENSIPUG00000024627	ddx27	99	71.022	Ictalurus_punctatus
ENSMUSG00000017999	Ddx27	99	91.368	ENSSTOG00000003645	DDX27	99	91.368	Ictidomys_tridecemlineatus
ENSMUSG00000017999	Ddx27	99	85.959	ENSJJAG00000009056	Ddx27	99	82.891	Jaculus_jaculus
ENSMUSG00000017999	Ddx27	99	69.007	ENSKMAG00000014889	ddx27	99	69.007	Kryptolebias_marmoratus
ENSMUSG00000017999	Ddx27	96	66.891	ENSLBEG00000022589	ddx27	100	67.935	Labrus_bergylta
ENSMUSG00000017999	Ddx27	99	75.792	ENSLACG00000011592	DDX27	99	76.056	Latimeria_chalumnae
ENSMUSG00000017999	Ddx27	99	72.222	ENSLOCG00000002659	ddx27	98	72.906	Lepisosteus_oculatus
ENSMUSG00000017999	Ddx27	100	90.576	ENSLAFG00000012190	DDX27	99	90.849	Loxodonta_africana
ENSMUSG00000017999	Ddx27	100	92.267	ENSMFAG00000045749	DDX27	99	92.297	Macaca_fascicularis
ENSMUSG00000017999	Ddx27	100	92.398	ENSMMUG00000023621	DDX27	99	92.430	Macaca_mulatta
ENSMUSG00000017999	Ddx27	100	92.398	ENSMNEG00000043931	DDX27	99	92.430	Macaca_nemestrina
ENSMUSG00000017999	Ddx27	100	89.267	ENSMLEG00000028160	DDX27	96	89.655	Mandrillus_leucophaeus
ENSMUSG00000017999	Ddx27	99	70.619	ENSMAMG00000009174	ddx27	93	78.141	Mastacembelus_armatus
ENSMUSG00000017999	Ddx27	99	70.703	ENSMZEG00005008750	ddx27	99	71.579	Maylandia_zebra
ENSMUSG00000017999	Ddx27	90	81.766	ENSMGAG00000008727	DDX27	99	81.232	Meleagris_gallopavo
ENSMUSG00000017999	Ddx27	99	94.821	ENSMAUG00000000552	Ddx27	99	94.954	Mesocricetus_auratus
ENSMUSG00000017999	Ddx27	100	91.895	ENSMICG00000002005	DDX27	99	92.053	Microcebus_murinus
ENSMUSG00000017999	Ddx27	99	95.340	ENSMOCG00000019594	Ddx27	99	95.340	Microtus_ochrogaster
ENSMUSG00000017999	Ddx27	98	65.670	ENSMMOG00000012754	ddx27	99	65.544	Mola_mola
ENSMUSG00000017999	Ddx27	100	86.763	ENSMODG00000016285	DDX27	99	86.720	Monodelphis_domestica
ENSMUSG00000017999	Ddx27	98	70.784	ENSMALG00000020942	ddx27	100	68.937	Monopterus_albus
ENSMUSG00000017999	Ddx27	100	98.816	MGP_CAROLIEiJ_G0024700	Ddx27	100	98.816	Mus_caroli
ENSMUSG00000017999	Ddx27	100	98.817	MGP_PahariEiJ_G0026142	Ddx27	100	98.817	Mus_pahari
ENSMUSG00000017999	Ddx27	100	99.737	MGP_SPRETEiJ_G0025620	Ddx27	100	99.800	Mus_spretus
ENSMUSG00000017999	Ddx27	100	89.673	ENSMPUG00000017572	DDX27	98	89.801	Mustela_putorius_furo
ENSMUSG00000017999	Ddx27	100	91.514	ENSMLUG00000003186	DDX27	99	92.063	Myotis_lucifugus
ENSMUSG00000017999	Ddx27	99	92.773	ENSNGAG00000023115	Ddx27	99	92.686	Nannospalax_galili
ENSMUSG00000017999	Ddx27	89	83.650	ENSNLEG00000006961	DDX27	90	84.148	Nomascus_leucogenys
ENSMUSG00000017999	Ddx27	100	81.021	ENSMEUG00000014412	DDX27	97	82.095	Notamacropus_eugenii
ENSMUSG00000017999	Ddx27	100	90.091	ENSOPRG00000014589	DDX27	97	90.331	Ochotona_princeps
ENSMUSG00000017999	Ddx27	99	91.368	ENSODEG00000006281	DDX27	98	91.501	Octodon_degus
ENSMUSG00000017999	Ddx27	99	70.883	ENSONIG00000019473	ddx27	99	70.921	Oreochromis_niloticus
ENSMUSG00000017999	Ddx27	99	81.541	ENSOANG00000006395	DDX27	96	81.673	Ornithorhynchus_anatinus
ENSMUSG00000017999	Ddx27	100	88.021	ENSOCUG00000016108	DDX27	95	88.228	Oryctolagus_cuniculus
ENSMUSG00000017999	Ddx27	99	70.079	ENSORLG00000013059	ddx27	99	70.252	Oryzias_latipes
ENSMUSG00000017999	Ddx27	99	70.252	ENSORLG00020021215	ddx27	99	70.249	Oryzias_latipes_hni
ENSMUSG00000017999	Ddx27	99	69.685	ENSORLG00015017588	ddx27	99	70.213	Oryzias_latipes_hsok
ENSMUSG00000017999	Ddx27	100	69.806	ENSOMEG00000023896	ddx27	99	70.196	Oryzias_melastigma
ENSMUSG00000017999	Ddx27	100	89.704	ENSOGAG00000002130	DDX27	99	88.918	Otolemur_garnettii
ENSMUSG00000017999	Ddx27	92	91.607	ENSOARG00000012345	DDX27	99	92.352	Ovis_aries
ENSMUSG00000017999	Ddx27	100	84.355	ENSPPAG00000035843	DDX27	95	90.476	Pan_paniscus
ENSMUSG00000017999	Ddx27	100	90.838	ENSPPRG00000006728	DDX27	99	92.042	Panthera_pardus
ENSMUSG00000017999	Ddx27	100	90.838	ENSPTIG00000011662	DDX27	99	92.042	Panthera_tigris_altaica
ENSMUSG00000017999	Ddx27	100	92.026	ENSPTRG00000013602	DDX27	99	91.149	Pan_troglodytes
ENSMUSG00000017999	Ddx27	100	85.490	ENSPANG00000000820	DDX27	99	85.430	Papio_anubis
ENSMUSG00000017999	Ddx27	99	69.347	ENSPKIG00000002802	ddx27	99	70.115	Paramormyrops_kingsleyae
ENSMUSG00000017999	Ddx27	89	79.767	ENSPSIG00000014493	DDX27	99	79.356	Pelodiscus_sinensis
ENSMUSG00000017999	Ddx27	98	67.460	ENSPMGG00000013002	ddx27	99	67.198	Periophthalmus_magnuspinnatus
ENSMUSG00000017999	Ddx27	99	95.739	ENSPEMG00000023215	Ddx27	99	95.739	Peromyscus_maniculatus_bairdii
ENSMUSG00000017999	Ddx27	99	64.883	ENSPMAG00000003094	ddx27	95	65.430	Petromyzon_marinus
ENSMUSG00000017999	Ddx27	78	91.356	ENSPCIG00000008052	DDX27	97	91.379	Phascolarctos_cinereus
ENSMUSG00000017999	Ddx27	96	70.095	ENSPFOG00000012217	ddx27	100	70.501	Poecilia_formosa
ENSMUSG00000017999	Ddx27	99	68.840	ENSPLAG00000005431	ddx27	99	69.841	Poecilia_latipinna
ENSMUSG00000017999	Ddx27	67	77.539	ENSPMEG00000005563	ddx27	99	77.539	Poecilia_mexicana
ENSMUSG00000017999	Ddx27	100	91.634	ENSPPYG00000011113	DDX27	99	92.318	Pongo_abelii
ENSMUSG00000017999	Ddx27	100	91.514	ENSPCOG00000025327	DDX27	96	91.667	Propithecus_coquereli
ENSMUSG00000017999	Ddx27	100	91.754	ENSPVAG00000006308	DDX27	95	92.440	Pteropus_vampyrus
ENSMUSG00000017999	Ddx27	99	60.943	ENSPNYG00000014670	ddx27	98	72.057	Pundamilia_nyererei
ENSMUSG00000017999	Ddx27	99	71.117	ENSPNAG00000016043	ddx27	99	71.969	Pygocentrus_nattereri
ENSMUSG00000017999	Ddx27	100	96.583	ENSRNOG00000008081	Ddx27	100	96.583	Rattus_norvegicus
ENSMUSG00000017999	Ddx27	100	84.735	ENSRBIG00000024112	DDX27	96	84.666	Rhinopithecus_bieti
ENSMUSG00000017999	Ddx27	100	91.492	ENSRROG00000024811	DDX27	99	91.910	Rhinopithecus_roxellana
ENSMUSG00000017999	Ddx27	61	44.654	YLL008W	-	70	42.185	Saccharomyces_cerevisiae
ENSMUSG00000017999	Ddx27	100	91.373	ENSSBOG00000034281	DDX27	99	91.921	Saimiri_boliviensis_boliviensis
ENSMUSG00000017999	Ddx27	100	67.696	ENSSMAG00000006972	ddx27	99	68.848	Scophthalmus_maximus
ENSMUSG00000017999	Ddx27	100	70.423	ENSSDUG00000018855	ddx27	99	68.037	Seriola_dumerili
ENSMUSG00000017999	Ddx27	100	68.678	ENSSLDG00000004114	ddx27	99	70.277	Seriola_lalandi_dorsalis
ENSMUSG00000017999	Ddx27	88	78.869	ENSSPUG00000015687	DDX27	99	78.884	Sphenodon_punctatus
ENSMUSG00000017999	Ddx27	96	68.443	ENSSPAG00000007670	ddx27	100	69.399	Stegastes_partitus
ENSMUSG00000017999	Ddx27	100	92.136	ENSSSCG00000022915	DDX27	99	92.165	Sus_scrofa
ENSMUSG00000017999	Ddx27	99	77.086	ENSTGUG00000005649	DDX27	99	77.036	Taeniopygia_guttata
ENSMUSG00000017999	Ddx27	93	67.614	ENSTRUG00000002089	ddx27	97	67.760	Takifugu_rubripes
ENSMUSG00000017999	Ddx27	99	68.758	ENSTNIG00000002987	ddx27	99	68.609	Tetraodon_nigroviridis
ENSMUSG00000017999	Ddx27	99	87.329	ENSTBEG00000005320	DDX27	95	84.953	Tupaia_belangeri
ENSMUSG00000017999	Ddx27	100	90.445	ENSTTRG00000004288	DDX27	95	90.849	Tursiops_truncatus
ENSMUSG00000017999	Ddx27	99	86.054	ENSUAMG00000025519	DDX27	90	91.717	Ursus_americanus
ENSMUSG00000017999	Ddx27	99	91.126	ENSUMAG00000024473	DDX27	99	91.126	Ursus_maritimus
ENSMUSG00000017999	Ddx27	99	83.219	ENSVPAG00000001314	DDX27	86	90.939	Vicugna_pacos
ENSMUSG00000017999	Ddx27	99	91.656	ENSVVUG00000022331	DDX27	99	91.656	Vulpes_vulpes
ENSMUSG00000017999	Ddx27	95	75.516	ENSXETG00000017231	ddx27	99	74.536	Xenopus_tropicalis
ENSMUSG00000017999	Ddx27	98	69.600	ENSXCOG00000017180	ddx27	99	70.651	Xiphophorus_couchianus
ENSMUSG00000017999	Ddx27	100	69.010	ENSXMAG00000012284	ddx27	99	70.185	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005694	chromosome	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0042254	ribosome biogenesis	-	IEA	Process