EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000018040 (Gene tree)
Gene ID: 74778
Gene Symbol: Rrp7a
Alias: 1110014J01Rik
Full Name: ribosomal RNA processing 7 homolog A (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 9369 bases
Position: chr15:83113433-83122801
Accession: 1922028
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000018184	RRP7	PF12923.7	1.1e-34	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000167483	-	759	-	ENSMUSP00000128380	163 (aa)	-	E9QAX0
ENSMUST00000166766	-	486	-	ENSMUSP00000127001	51 (aa)	-	F6VVA3
ENSMUST00000166019	-	492	-	ENSMUSP00000129142	145 (aa)	-	E9PYF0
ENSMUST00000167589	-	792	-	-	- (aa)	-	-
ENSMUST00000018184	-	4363	-	ENSMUSP00000018184	280 (aa)	-	Q9D1C9

Gene Model

Click here to download ENSMUSG00000018040's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018040's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018040	Rrp7a	100	83.929	ENSG00000189306	RRP7A	100	83.929	Homo_sapiens
ENSMUSG00000018040	Rrp7a	84	79.070	ENSAPOG00000021250	rrp7a	99	45.283	Acanthochromis_polyacanthus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSAMEG00000009503	RRP7A	100	83.214	Ailuropoda_melanoleuca
ENSMUSG00000018040	Rrp7a	98	80.000	ENSACIG00000023067	rrp7a	94	47.761	Amphilophus_citrinellus
ENSMUSG00000018040	Rrp7a	84	79.070	ENSAOCG00000004115	rrp7a	94	46.992	Amphiprion_ocellaris
ENSMUSG00000018040	Rrp7a	84	79.070	ENSAPEG00000013688	rrp7a	98	47.328	Amphiprion_percula
ENSMUSG00000018040	Rrp7a	82	73.810	ENSATEG00000009664	rrp7a	94	47.761	Anabas_testudineus
ENSMUSG00000018040	Rrp7a	98	90.000	ENSACAG00000003579	RRP7A	94	62.879	Anolis_carolinensis
ENSMUSG00000018040	Rrp7a	100	84.286	ENSANAG00000031200	RRP7A	100	84.286	Aotus_nancymaae
ENSMUSG00000018040	Rrp7a	96	79.592	ENSACLG00000016790	rrp7a	99	48.754	Astatotilapia_calliptera
ENSMUSG00000018040	Rrp7a	84	79.070	ENSAMXG00000007921	rrp7a	90	46.241	Astyanax_mexicanus
ENSMUSG00000018040	Rrp7a	98	98.000	ENSBTAG00000016510	RRP7A	100	79.643	Bos_taurus
ENSMUSG00000018040	Rrp7a	100	81.071	ENSCJAG00000009668	RRP7A	100	81.071	Callithrix_jacchus
ENSMUSG00000018040	Rrp7a	98	98.000	ENSCAFG00000000965	RRP7	100	82.143	Canis_familiaris
ENSMUSG00000018040	Rrp7a	98	98.000	ENSCAFG00020000251	RRP7A	100	82.143	Canis_lupus_dingo
ENSMUSG00000018040	Rrp7a	98	98.000	ENSCHIG00000026787	RRP7A	100	80.357	Capra_hircus
ENSMUSG00000018040	Rrp7a	98	98.000	ENSTSYG00000000198	RRP7A	100	84.286	Carlito_syrichta
ENSMUSG00000018040	Rrp7a	84	95.349	ENSCAPG00000002325	RRP7A	100	82.759	Cavia_aperea
ENSMUSG00000018040	Rrp7a	100	82.500	ENSCPOG00000030547	RRP7A	100	82.500	Cavia_porcellus
ENSMUSG00000018040	Rrp7a	84	93.023	ENSCCAG00000021486	RRP7A	100	68.571	Cebus_capucinus
ENSMUSG00000018040	Rrp7a	100	81.429	ENSCLAG00000016715	RRP7A	100	81.429	Chinchilla_lanigera
ENSMUSG00000018040	Rrp7a	100	83.571	ENSCSAG00000005657	RRP7A	100	83.571	Chlorocebus_sabaeus
ENSMUSG00000018040	Rrp7a	98	92.000	ENSCPBG00000021814	RRP7A	95	70.076	Chrysemys_picta_bellii
ENSMUSG00000018040	Rrp7a	84	53.488	ENSCSAVG00000002555	-	85	42.222	Ciona_savignyi
ENSMUSG00000018040	Rrp7a	67	84.848	ENSCGRG00001021873	-	100	84.848	Cricetulus_griseus_chok1gshd
ENSMUSG00000018040	Rrp7a	98	90.000	ENSCGRG00001005713	-	100	85.463	Cricetulus_griseus_chok1gshd
ENSMUSG00000018040	Rrp7a	98	90.000	ENSCGRG00000000552	-	99	80.000	Cricetulus_griseus_crigri
ENSMUSG00000018040	Rrp7a	98	90.000	ENSCGRG00000000540	-	100	77.647	Cricetulus_griseus_crigri
ENSMUSG00000018040	Rrp7a	98	100.000	ENSCGRG00000009567	-	100	85.357	Cricetulus_griseus_crigri
ENSMUSG00000018040	Rrp7a	98	74.000	ENSCSEG00000007185	rrp7a	94	48.120	Cynoglossus_semilaevis
ENSMUSG00000018040	Rrp7a	98	78.000	ENSCVAG00000004349	rrp7a	96	47.253	Cyprinodon_variegatus
ENSMUSG00000018040	Rrp7a	84	76.744	ENSDARG00000098934	rrp7a	99	43.321	Danio_rerio
ENSMUSG00000018040	Rrp7a	98	100.000	ENSDNOG00000037442	RRP7A	92	85.714	Dasypus_novemcinctus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSDORG00000016138	Rrp7a	100	82.143	Dipodomys_ordii
ENSMUSG00000018040	Rrp7a	88	51.111	FBgn0031764	CG9107	98	36.704	Drosophila_melanogaster
ENSMUSG00000018040	Rrp7a	98	98.000	ENSETEG00000018025	RRP7A	100	82.353	Echinops_telfairi
ENSMUSG00000018040	Rrp7a	98	68.000	ENSEBUG00000010231	rrp7a	91	43.774	Eptatretus_burgeri
ENSMUSG00000018040	Rrp7a	98	100.000	ENSEASG00005000804	RRP7A	100	85.000	Equus_asinus_asinus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSECAG00000015168	RRP7	100	84.643	Equus_caballus
ENSMUSG00000018040	Rrp7a	98	80.000	ENSELUG00000009036	rrp7a	94	47.348	Esox_lucius
ENSMUSG00000018040	Rrp7a	100	81.429	ENSFCAG00000033258	RRP7A	79	81.429	Felis_catus
ENSMUSG00000018040	Rrp7a	96	93.878	ENSFALG00000011635	RRP7A	87	66.409	Ficedula_albicollis
ENSMUSG00000018040	Rrp7a	98	98.000	ENSFDAG00000001321	RRP7A	100	82.079	Fukomys_damarensis
ENSMUSG00000018040	Rrp7a	98	78.000	ENSFHEG00000006098	rrp7a	95	46.237	Fundulus_heteroclitus
ENSMUSG00000018040	Rrp7a	84	81.395	ENSGMOG00000006218	rrp7a	99	48.679	Gadus_morhua
ENSMUSG00000018040	Rrp7a	98	92.000	ENSGALG00000011866	RRP7A	97	66.292	Gallus_gallus
ENSMUSG00000018040	Rrp7a	98	74.000	ENSGAFG00000017459	rrp7a	99	44.444	Gambusia_affinis
ENSMUSG00000018040	Rrp7a	98	70.000	ENSGACG00000007212	rrp7a	99	47.566	Gasterosteus_aculeatus
ENSMUSG00000018040	Rrp7a	98	92.000	ENSGAGG00000014621	RRP7A	99	68.345	Gopherus_agassizii
ENSMUSG00000018040	Rrp7a	84	95.349	ENSGGOG00000014957	RRP7A	100	82.500	Gorilla_gorilla
ENSMUSG00000018040	Rrp7a	96	79.592	ENSHBUG00000021788	rrp7a	99	48.754	Haplochromis_burtoni
ENSMUSG00000018040	Rrp7a	96	97.959	ENSHGLG00000015706	RRP7A	100	80.212	Heterocephalus_glaber_female
ENSMUSG00000018040	Rrp7a	98	94.000	ENSHGLG00100009556	-	100	76.868	Heterocephalus_glaber_male
ENSMUSG00000018040	Rrp7a	98	80.292	ENSHGLG00100008187	-	96	82.022	Heterocephalus_glaber_male
ENSMUSG00000018040	Rrp7a	84	79.070	ENSHCOG00000005813	rrp7a	82	47.566	Hippocampus_comes
ENSMUSG00000018040	Rrp7a	96	77.551	ENSIPUG00000000556	rrp7a	95	50.000	Ictalurus_punctatus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSSTOG00000003111	RRP7A	100	84.643	Ictidomys_tridecemlineatus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSJJAG00000019486	Rrp7a	100	82.500	Jaculus_jaculus
ENSMUSG00000018040	Rrp7a	84	81.395	ENSKMAG00000013819	rrp7a	94	47.940	Kryptolebias_marmoratus
ENSMUSG00000018040	Rrp7a	98	78.000	ENSLACG00000002670	RRP7A	98	58.801	Latimeria_chalumnae
ENSMUSG00000018040	Rrp7a	98	94.000	ENSLAFG00000012447	RRP7A	100	82.143	Loxodonta_africana
ENSMUSG00000018040	Rrp7a	84	95.349	ENSMFAG00000041664	-	100	77.500	Macaca_fascicularis
ENSMUSG00000018040	Rrp7a	100	84.643	ENSMFAG00000042855	RRP7A	100	84.643	Macaca_fascicularis
ENSMUSG00000018040	Rrp7a	84	95.349	ENSMMUG00000009716	RRP7A	100	71.071	Macaca_mulatta
ENSMUSG00000018040	Rrp7a	100	78.929	ENSMMUG00000010193	-	100	78.929	Macaca_mulatta
ENSMUSG00000018040	Rrp7a	95	85.768	ENSMNEG00000033705	RRP7A	100	84.286	Macaca_nemestrina
ENSMUSG00000018040	Rrp7a	84	95.349	ENSMLEG00000040230	RRP7A	99	75.479	Mandrillus_leucophaeus
ENSMUSG00000018040	Rrp7a	84	79.070	ENSMAMG00000009125	rrp7a	94	49.813	Mastacembelus_armatus
ENSMUSG00000018040	Rrp7a	96	79.592	ENSMZEG00005005197	rrp7a	99	48.754	Maylandia_zebra
ENSMUSG00000018040	Rrp7a	98	92.000	ENSMGAG00000011980	RRP7A	100	68.217	Meleagris_gallopavo
ENSMUSG00000018040	Rrp7a	98	98.000	ENSMICG00000041800	RRP7A	100	86.429	Microcebus_murinus
ENSMUSG00000018040	Rrp7a	84	79.070	ENSMMOG00000004976	rrp7a	95	47.368	Mola_mola
ENSMUSG00000018040	Rrp7a	98	96.000	ENSMODG00000006914	RRP7A	94	71.161	Monodelphis_domestica
ENSMUSG00000018040	Rrp7a	84	74.419	ENSMALG00000001933	rrp7a	94	47.566	Monopterus_albus
ENSMUSG00000018040	Rrp7a	98	100.000	MGP_CAROLIEiJ_G0020092	Rrp7a	100	97.857	Mus_caroli
ENSMUSG00000018040	Rrp7a	98	100.000	MGP_PahariEiJ_G0020099	Rrp7a	100	97.143	Mus_pahari
ENSMUSG00000018040	Rrp7a	100	99.643	MGP_SPRETEiJ_G0020990	Rrp7a	100	99.643	Mus_spretus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSMPUG00000016315	RRP7A	100	81.786	Mustela_putorius_furo
ENSMUSG00000018040	Rrp7a	98	100.000	ENSMLUG00000012404	RRP7A	100	84.286	Myotis_lucifugus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSNGAG00000010039	Rrp7a	100	84.286	Nannospalax_galili
ENSMUSG00000018040	Rrp7a	96	79.592	ENSNBRG00000001824	rrp7a	99	48.399	Neolamprologus_brichardi
ENSMUSG00000018040	Rrp7a	95	85.393	ENSNLEG00000036258	RRP7A	100	83.929	Nomascus_leucogenys
ENSMUSG00000018040	Rrp7a	84	93.023	ENSMEUG00000013929	-	100	89.423	Notamacropus_eugenii
ENSMUSG00000018040	Rrp7a	98	98.000	ENSODEG00000015126	RRP7A	100	78.929	Octodon_degus
ENSMUSG00000018040	Rrp7a	96	79.592	ENSONIG00000008364	rrp7a	94	49.064	Oreochromis_niloticus
ENSMUSG00000018040	Rrp7a	82	65.086	ENSOANG00000015007	RRP7A	85	65.086	Ornithorhynchus_anatinus
ENSMUSG00000018040	Rrp7a	99	76.344	ENSOCUG00000027434	RRP7A	100	76.344	Oryctolagus_cuniculus
ENSMUSG00000018040	Rrp7a	84	76.744	ENSORLG00000014826	rrp7a	94	47.191	Oryzias_latipes
ENSMUSG00000018040	Rrp7a	84	76.744	ENSORLG00020006078	rrp7a	94	47.191	Oryzias_latipes_hni
ENSMUSG00000018040	Rrp7a	90	78.261	ENSORLG00015018190	rrp7a	94	46.816	Oryzias_latipes_hsok
ENSMUSG00000018040	Rrp7a	80	78.049	ENSOMEG00000007090	rrp7a	99	45.714	Oryzias_melastigma
ENSMUSG00000018040	Rrp7a	98	96.000	ENSOGAG00000002857	RRP7A	100	82.500	Otolemur_garnettii
ENSMUSG00000018040	Rrp7a	98	98.000	ENSOARG00000018986	RRP7A	100	80.000	Ovis_aries
ENSMUSG00000018040	Rrp7a	84	72.093	ENSPPAG00000029825	-	85	77.033	Pan_paniscus
ENSMUSG00000018040	Rrp7a	84	95.349	ENSPPAG00000021416	-	77	88.208	Pan_paniscus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSPPRG00000022185	RRP7A	100	81.429	Panthera_pardus
ENSMUSG00000018040	Rrp7a	95	57.246	ENSPTIG00000020965	RRP7A	100	55.556	Panthera_tigris_altaica
ENSMUSG00000018040	Rrp7a	50	79.286	ENSPTRG00000033935	-	100	77.124	Pan_troglodytes
ENSMUSG00000018040	Rrp7a	100	84.286	ENSPANG00000025354	-	100	84.286	Papio_anubis
ENSMUSG00000018040	Rrp7a	84	95.349	ENSPANG00000032001	-	100	77.857	Papio_anubis
ENSMUSG00000018040	Rrp7a	84	83.721	ENSPKIG00000007209	rrp7a	81	49.254	Paramormyrops_kingsleyae
ENSMUSG00000018040	Rrp7a	98	92.000	ENSPSIG00000007988	RRP7A	97	68.992	Pelodiscus_sinensis
ENSMUSG00000018040	Rrp7a	84	76.744	ENSPMGG00000009485	rrp7a	91	39.922	Periophthalmus_magnuspinnatus
ENSMUSG00000018040	Rrp7a	98	98.000	ENSPEMG00000022265	Rrp7a	100	89.286	Peromyscus_maniculatus_bairdii
ENSMUSG00000018040	Rrp7a	98	78.000	ENSPMAG00000002823	rrp7a	100	48.582	Petromyzon_marinus
ENSMUSG00000018040	Rrp7a	84	95.349	ENSPCIG00000026195	RRP7A	95	72.180	Phascolarctos_cinereus
ENSMUSG00000018040	Rrp7a	98	72.000	ENSPFOG00000001042	rrp7a	94	46.442	Poecilia_formosa
ENSMUSG00000018040	Rrp7a	98	74.000	ENSPLAG00000010787	-	72	52.907	Poecilia_latipinna
ENSMUSG00000018040	Rrp7a	98	74.000	ENSPLAG00000009537	rrp7a	72	52.907	Poecilia_latipinna
ENSMUSG00000018040	Rrp7a	98	74.000	ENSPMEG00000018204	rrp7a	94	46.816	Poecilia_mexicana
ENSMUSG00000018040	Rrp7a	84	74.419	ENSPREG00000016492	rrp7a	94	47.744	Poecilia_reticulata
ENSMUSG00000018040	Rrp7a	84	95.349	ENSPPYG00000011897	RRP7A	100	82.857	Pongo_abelii
ENSMUSG00000018040	Rrp7a	67	91.176	ENSPCAG00000009386	-	95	93.182	Procavia_capensis
ENSMUSG00000018040	Rrp7a	98	98.000	ENSPCOG00000014018	RRP7A	100	84.643	Propithecus_coquereli
ENSMUSG00000018040	Rrp7a	90	82.937	ENSPVAG00000003330	RRP7A	100	82.937	Pteropus_vampyrus
ENSMUSG00000018040	Rrp7a	96	79.592	ENSPNYG00000020343	rrp7a	99	48.399	Pundamilia_nyererei
ENSMUSG00000018040	Rrp7a	84	81.395	ENSPNAG00000014376	rrp7a	94	46.792	Pygocentrus_nattereri
ENSMUSG00000018040	Rrp7a	98	98.000	ENSRNOG00000022896	Rrp7a	100	93.929	Rattus_norvegicus
ENSMUSG00000018040	Rrp7a	98	80.000	ENSRBIG00000040358	RRP7A	100	72.340	Rhinopithecus_bieti
ENSMUSG00000018040	Rrp7a	100	82.918	ENSRROG00000036754	RRP7A	100	82.918	Rhinopithecus_roxellana
ENSMUSG00000018040	Rrp7a	98	94.000	ENSSBOG00000009234	RRP7A	100	81.429	Saimiri_boliviensis_boliviensis
ENSMUSG00000018040	Rrp7a	84	97.674	ENSSHAG00000005715	RRP7A	100	75.598	Sarcophilus_harrisii
ENSMUSG00000018040	Rrp7a	84	76.744	ENSSFOG00015012621	rrp7a	86	51.661	Scleropages_formosus
ENSMUSG00000018040	Rrp7a	84	76.744	ENSSMAG00000004593	rrp7a	99	48.214	Scophthalmus_maximus
ENSMUSG00000018040	Rrp7a	84	76.744	ENSSDUG00000016921	rrp7a	94	48.496	Seriola_dumerili
ENSMUSG00000018040	Rrp7a	84	76.744	ENSSLDG00000024758	rrp7a	94	48.120	Seriola_lalandi_dorsalis
ENSMUSG00000018040	Rrp7a	98	98.000	ENSSARG00000011585	-	90	96.471	Sorex_araneus
ENSMUSG00000018040	Rrp7a	82	95.238	ENSSARG00000002133	-	67	95.238	Sorex_araneus
ENSMUSG00000018040	Rrp7a	86	62.963	ENSSPUG00000005373	RRP7A	97	62.963	Sphenodon_punctatus
ENSMUSG00000018040	Rrp7a	80	78.049	ENSSPAG00000016048	rrp7a	94	46.816	Stegastes_partitus
ENSMUSG00000018040	Rrp7a	96	100.000	ENSSSCG00000033983	RRP7A	100	81.429	Sus_scrofa
ENSMUSG00000018040	Rrp7a	98	92.000	ENSTGUG00000009647	RRP7A	100	65.759	Taeniopygia_guttata
ENSMUSG00000018040	Rrp7a	98	72.000	ENSTRUG00000024726	rrp7a	99	45.126	Takifugu_rubripes
ENSMUSG00000018040	Rrp7a	84	76.744	ENSTNIG00000010842	rrp7a	98	46.595	Tetraodon_nigroviridis
ENSMUSG00000018040	Rrp7a	98	98.000	ENSTTRG00000015125	-	100	95.192	Tursiops_truncatus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSUAMG00000026180	RRP7A	100	83.571	Ursus_americanus
ENSMUSG00000018040	Rrp7a	98	100.000	ENSUMAG00000020394	RRP7A	100	81.429	Ursus_maritimus
ENSMUSG00000018040	Rrp7a	98	98.000	ENSVVUG00000002248	-	84	68.976	Vulpes_vulpes
ENSMUSG00000018040	Rrp7a	98	86.000	ENSXETG00000013414	rrp7a	97	59.551	Xenopus_tropicalis
ENSMUSG00000018040	Rrp7a	98	74.000	ENSXCOG00000015955	rrp7a	95	46.468	Xiphophorus_couchianus
ENSMUSG00000018040	Rrp7a	98	74.000	ENSXMAG00000006165	rrp7a	99	44.803	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000028	ribosomal small subunit assembly	21873635.	IBA	Process
GO:0001825	blastocyst formation	23211737.27869233.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	23211737.	IDA	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0032545	CURI complex	21873635.	IBA	Component
GO:0034456	UTP-C complex	21873635.	IBA	Component