EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000018379 (Gene tree)
Gene ID
110809
Gene Symbol
Srsf1
Alias
1110054N12Rik|5730507C05Rik|6330415C05Rik|Sfrs1
Full Name
serine/arginine-rich splicing factor 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
6383 bases
Position
chr11:88047373-88053755
Accession
98283
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000133517RRM_1PF00076.228e-3412
ENSMUSP00000133517RRM_1PF00076.228e-3422
ENSMUSP00000120595RRM_1PF00076.223.1e-3312
ENSMUSP00000120595RRM_1PF00076.223.1e-3322
ENSMUSP00000103553RRM_1PF00076.223.3e-3312
ENSMUSP00000103553RRM_1PF00076.223.3e-3322
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000139129-5362-ENSMUSP00000120595248 (aa)-Q6PDM2
ENSMUST00000134824-896-ENSMUSP00000114549106 (aa)-F7AI47
ENSMUST00000107920-1209-ENSMUSP00000103553253 (aa)-H7BX95
ENSMUST00000132983-759--- (aa)--
ENSMUST00000079866-2948-ENSMUSP00000133517201 (aa)-Q6PDM2
ENSMUST00000171976-645--- (aa)--
ENSMUST00000172186-401-ENSMUSP0000012819058 (aa)-F6QXN3
Gene Model
Click here to download ENSMUSG00000018379's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
mmu04657IL-17 signaling pathwayKEGG
mmu05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018379's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000018379Srsf18672.414ENSMUSG00000029538Srsf97870.330
ENSMUSG00000018379Srsf18046.988ENSMUSG00000021134Srsf59651.020
ENSMUSG00000018379Srsf18242.857ENSMUSG00000016921Srsf65840.670
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000018379Srsf1100100.000ENSG00000136450SRSF1100100.000Homo_sapiens
ENSMUSG00000018379Srsf19091.160ENSAPOG00000002748-9884.362Acanthochromis_polyacanthus
ENSMUSG00000018379Srsf19290.217ENSAPOG00000008542-10086.220Acanthochromis_polyacanthus
ENSMUSG00000018379Srsf110097.177ENSAMEG00000002635SRSF110097.177Ailuropoda_melanoleuca
ENSMUSG00000018379Srsf19090.055ENSACIG00000008091srsf1a9878.926Amphilophus_citrinellus
ENSMUSG00000018379Srsf19091.713ENSAOCG00000010671-9885.185Amphiprion_ocellaris
ENSMUSG00000018379Srsf19289.474ENSAOCG00000000337-10086.508Amphiprion_ocellaris
ENSMUSG00000018379Srsf19289.474ENSAPEG00000023352-9986.561Amphiprion_percula
ENSMUSG00000018379Srsf19091.713ENSAPEG00000009915-9885.185Amphiprion_percula
ENSMUSG00000018379Srsf19288.587ENSATEG00000021567-10084.959Anabas_testudineus
ENSMUSG00000018379Srsf19091.713ENSATEG00000022403-9884.898Anabas_testudineus
ENSMUSG00000018379Srsf110098.387ENSACAG00000005542-10098.387Anolis_carolinensis
ENSMUSG00000018379Srsf19580.198ENSANAG00000025417-9976.016Aotus_nancymaae
ENSMUSG00000018379Srsf1100100.000ENSANAG00000020583-100100.000Aotus_nancymaae
ENSMUSG00000018379Srsf19491.632ENSAMXG00000035996srsf1a9893.145Astyanax_mexicanus
ENSMUSG00000018379Srsf16995.890ENSAMXG00000024373-9477.778Astyanax_mexicanus
ENSMUSG00000018379Srsf1100100.000ENSBTAG00000014766SRSF1100100.000Bos_taurus
ENSMUSG00000018379Srsf1100100.000ENSCJAG00000041713-100100.000Callithrix_jacchus
ENSMUSG00000018379Srsf19489.947ENSCJAG00000008111-8891.371Callithrix_jacchus
ENSMUSG00000018379Srsf1100100.000ENSCAFG00000017430SRSF1100100.000Canis_familiaris
ENSMUSG00000018379Srsf1100100.000ENSCAFG00020025632-100100.000Canis_lupus_dingo
ENSMUSG00000018379Srsf1100100.000ENSCHIG00000010787SRSF1100100.000Capra_hircus
ENSMUSG00000018379Srsf1100100.000ENSTSYG00000013899-100100.000Carlito_syrichta
ENSMUSG00000018379Srsf1100100.000ENSCPOG00000032681-100100.000Cavia_porcellus
ENSMUSG00000018379Srsf1100100.000ENSCCAG00000029484-100100.000Cebus_capucinus
ENSMUSG00000018379Srsf1100100.000ENSCATG00000042294-100100.000Cercocebus_atys
ENSMUSG00000018379Srsf1100100.000ENSCLAG00000014707-100100.000Chinchilla_lanigera
ENSMUSG00000018379Srsf110099.209ENSCSAG00000005642-10099.209Chlorocebus_sabaeus
ENSMUSG00000018379Srsf1100100.000ENSCHOG00000001899SRSF1100100.000Choloepus_hoffmanni
ENSMUSG00000018379Srsf110098.814ENSCPBG00000009851-10098.814Chrysemys_picta_bellii
ENSMUSG00000018379Srsf1100100.000ENSCANG00000029726-100100.000Colobus_angolensis_palliatus
ENSMUSG00000018379Srsf1100100.000ENSCGRG00001000670Srsf1100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000018379Srsf1100100.000ENSCGRG00000005590Srsf1100100.000Cricetulus_griseus_crigri
ENSMUSG00000018379Srsf19089.674ENSCSEG00000014272-9884.553Cynoglossus_semilaevis
ENSMUSG00000018379Srsf19283.500ENSCSEG00000009973-10080.303Cynoglossus_semilaevis
ENSMUSG00000018379Srsf19189.189ENSCVAG00000005458-9886.179Cyprinodon_variegatus
ENSMUSG00000018379Srsf19091.713ENSCVAG00000018617-9885.185Cyprinodon_variegatus
ENSMUSG00000018379Srsf19996.735ENSDARG00000017843srsf1b9996.735Danio_rerio
ENSMUSG00000018379Srsf19189.583ENSDARG00000057691srsf1a9892.095Danio_rerio
ENSMUSG00000018379Srsf1100100.000ENSDNOG00000011737-100100.000Dasypus_novemcinctus
ENSMUSG00000018379Srsf1100100.000ENSDORG00000015082Srsf1100100.000Dipodomys_ordii
ENSMUSG00000018379Srsf19298.913ENSETEG00000005349-6398.913Echinops_telfairi
ENSMUSG00000018379Srsf1100100.000ENSEASG00005002922-100100.000Equus_asinus_asinus
ENSMUSG00000018379Srsf1100100.000ENSECAG00000016654SRSF1100100.000Equus_caballus
ENSMUSG00000018379Srsf192100.000ENSEEUG00000009255-63100.000Erinaceus_europaeus
ENSMUSG00000018379Srsf19191.209ENSELUG00000021646srsf1a9879.839Esox_lucius
ENSMUSG00000018379Srsf1100100.000ENSFCAG00000002250-100100.000Felis_catus
ENSMUSG00000018379Srsf110082.213ENSFALG00000005062-10082.213Ficedula_albicollis
ENSMUSG00000018379Srsf1100100.000ENSFDAG00000010646-100100.000Fukomys_damarensis
ENSMUSG00000018379Srsf19091.713ENSFHEG00000003174srsf1a9885.185Fundulus_heteroclitus
ENSMUSG00000018379Srsf19088.333ENSGMOG00000014787-9982.645Gadus_morhua
ENSMUSG00000018379Srsf15577.586ENSGMOG00000014445-7380.303Gadus_morhua
ENSMUSG00000018379Srsf110098.790ENSGALG00000005525SRSF110098.790Gallus_gallus
ENSMUSG00000018379Srsf19286.413ENSGACG00000020621srsf1b10074.390Gasterosteus_aculeatus
ENSMUSG00000018379Srsf110098.814ENSGAGG00000022965-10098.814Gopherus_agassizii
ENSMUSG00000018379Srsf1100100.000ENSGGOG00000004386SRSF1100100.000Gorilla_gorilla
ENSMUSG00000018379Srsf19090.556ENSHBUG00000016788srsf1a9884.774Haplochromis_burtoni
ENSMUSG00000018379Srsf188100.000ENSHGLG00000000669-100100.000Heterocephalus_glaber_female
ENSMUSG00000018379Srsf188100.000ENSHGLG00000000600-100100.000Heterocephalus_glaber_female
ENSMUSG00000018379Srsf1100100.000ENSHGLG00100016906-100100.000Heterocephalus_glaber_male
ENSMUSG00000018379Srsf19088.108ENSHCOG00000018918srsf1a9781.928Hippocampus_comes
ENSMUSG00000018379Srsf19491.213ENSIPUG00000017039srsf1a9893.145Ictalurus_punctatus
ENSMUSG00000018379Srsf110095.968ENSIPUG00000008750srsf1b10095.968Ictalurus_punctatus
ENSMUSG00000018379Srsf1100100.000ENSSTOG00000000243-100100.000Ictidomys_tridecemlineatus
ENSMUSG00000018379Srsf1100100.000ENSJJAG00000000102-100100.000Jaculus_jaculus
ENSMUSG00000018379Srsf16392.126ENSJJAG00000014464-9588.189Jaculus_jaculus
ENSMUSG00000018379Srsf19090.055ENSKMAG00000019232srsf1a9883.951Kryptolebias_marmoratus
ENSMUSG00000018379Srsf19282.888ENSLBEG00000015294-9883.133Labrus_bergylta
ENSMUSG00000018379Srsf19090.608ENSLBEG00000020864-9884.362Labrus_bergylta
ENSMUSG00000018379Srsf19091.713ENSLACG00000014160srsf1a9293.878Latimeria_chalumnae
ENSMUSG00000018379Srsf110097.177ENSLOCG00000005994srsf1a10097.177Lepisosteus_oculatus
ENSMUSG00000018379Srsf1100100.000ENSLAFG00000025743SRSF1100100.000Loxodonta_africana
ENSMUSG00000018379Srsf1100100.000ENSMFAG00000040003-100100.000Macaca_fascicularis
ENSMUSG00000018379Srsf1100100.000ENSMMUG00000004725SRSF1100100.000Macaca_mulatta
ENSMUSG00000018379Srsf110097.233ENSMMUG00000003260-10097.233Macaca_mulatta
ENSMUSG00000018379Srsf110096.838ENSMNEG00000015983-10096.838Macaca_nemestrina
ENSMUSG00000018379Srsf1100100.000ENSMNEG00000027680-100100.000Macaca_nemestrina
ENSMUSG00000018379Srsf110094.466ENSMLEG00000015243-10094.466Mandrillus_leucophaeus
ENSMUSG00000018379Srsf1100100.000ENSMLEG00000040509SRSF1100100.000Mandrillus_leucophaeus
ENSMUSG00000018379Srsf19293.478ENSMAMG00000019691-10088.211Mastacembelus_armatus
ENSMUSG00000018379Srsf19288.587ENSMAMG00000019687-10085.081Mastacembelus_armatus
ENSMUSG00000018379Srsf19091.713ENSMAMG00000018454-9885.185Mastacembelus_armatus
ENSMUSG00000018379Srsf1100100.000ENSMAUG00000021845Srsf1100100.000Mesocricetus_auratus
ENSMUSG00000018379Srsf1100100.000ENSMICG00000013639-100100.000Microcebus_murinus
ENSMUSG00000018379Srsf1100100.000ENSMOCG00000001996Srsf1100100.000Microtus_ochrogaster
ENSMUSG00000018379Srsf19090.556ENSMMOG00000014354srsf1a9878.099Mola_mola
ENSMUSG00000018379Srsf19298.919ENSMODG00000014781-6398.919Monodelphis_domestica
ENSMUSG00000018379Srsf19276.630ENSMALG00000007763-7979.695Monopterus_albus
ENSMUSG00000018379Srsf19091.160ENSMALG00000017129-7588.601Monopterus_albus
ENSMUSG00000018379Srsf1100100.000MGP_CAROLIEiJ_G0016943Srsf1100100.000Mus_caroli
ENSMUSG00000018379Srsf1100100.000MGP_PahariEiJ_G0018074Srsf1100100.000Mus_pahari
ENSMUSG00000018379Srsf1100100.000MGP_SPRETEiJ_G0017790Srsf1100100.000Mus_spretus
ENSMUSG00000018379Srsf1100100.000ENSMPUG00000015369SRSF1100100.000Mustela_putorius_furo
ENSMUSG00000018379Srsf19287.500ENSMLUG00000023995-10090.323Myotis_lucifugus
ENSMUSG00000018379Srsf1100100.000ENSMLUG00000011040SRSF1100100.000Myotis_lucifugus
ENSMUSG00000018379Srsf1100100.000ENSNGAG00000011395Srsf1100100.000Nannospalax_galili
ENSMUSG00000018379Srsf110079.839ENSNBRG00000008041srsf1b8082.741Neolamprologus_brichardi
ENSMUSG00000018379Srsf1100100.000ENSNLEG00000008088-100100.000Nomascus_leucogenys
ENSMUSG00000018379Srsf16398.425ENSMEUG00000002783-10098.425Notamacropus_eugenii
ENSMUSG00000018379Srsf188100.000ENSOPRG00000001234-100100.000Ochotona_princeps
ENSMUSG00000018379Srsf110099.597ENSODEG00000011481-10099.597Octodon_degus
ENSMUSG00000018379Srsf19690.717ENSONIG00000004860-8190.863Oreochromis_niloticus
ENSMUSG00000018379Srsf19090.055ENSONIG00000013160-9884.774Oreochromis_niloticus
ENSMUSG00000018379Srsf110070.238ENSOCUG00000010894-7771.795Oryctolagus_cuniculus
ENSMUSG00000018379Srsf19091.713ENSORLG00000004580srsf1a9885.185Oryzias_latipes
ENSMUSG00000018379Srsf19091.713ENSORLG00020009456srsf1a9885.185Oryzias_latipes_hni
ENSMUSG00000018379Srsf19092.222ENSORLG00015014384srsf1a9884.774Oryzias_latipes_hsok
ENSMUSG00000018379Srsf18190.798ENSOMEG00000004106srsf1a9282.743Oryzias_melastigma
ENSMUSG00000018379Srsf1100100.000ENSOGAG00000025950-100100.000Otolemur_garnettii
ENSMUSG00000018379Srsf110095.161ENSOARG00000008323SRSF110095.161Ovis_aries
ENSMUSG00000018379Srsf1100100.000ENSPPAG00000043403-100100.000Pan_paniscus
ENSMUSG00000018379Srsf1100100.000ENSPPRG00000004238-100100.000Panthera_pardus
ENSMUSG00000018379Srsf1100100.000ENSPTRG00000049077SRSF1100100.000Pan_troglodytes
ENSMUSG00000018379Srsf110077.075ENSPANG00000030275-10076.680Papio_anubis
ENSMUSG00000018379Srsf1100100.000ENSPANG00000022305-100100.000Papio_anubis
ENSMUSG00000018379Srsf110095.968ENSPKIG00000012857srsf1b10095.968Paramormyrops_kingsleyae
ENSMUSG00000018379Srsf19995.102ENSPKIG00000007204srsf1a9995.102Paramormyrops_kingsleyae
ENSMUSG00000018379Srsf18896.774ENSPSIG00000009000-10092.000Pelodiscus_sinensis
ENSMUSG00000018379Srsf19684.937ENSPMGG00000005467-9985.470Periophthalmus_magnuspinnatus
ENSMUSG00000018379Srsf19487.113ENSPMGG00000013112-9985.654Periophthalmus_magnuspinnatus
ENSMUSG00000018379Srsf1100100.000ENSPEMG00000021416Srsf1100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000018379Srsf110099.197ENSPCIG00000006076-10099.197Phascolarctos_cinereus
ENSMUSG00000018379Srsf19189.617ENSPFOG00000018325-8685.714Poecilia_formosa
ENSMUSG00000018379Srsf19189.617ENSPLAG00000008416srsf1b9885.714Poecilia_latipinna
ENSMUSG00000018379Srsf16189.431ENSPMEG00000020607-9887.805Poecilia_mexicana
ENSMUSG00000018379Srsf16189.431ENSPMEG00000014312-9887.805Poecilia_mexicana
ENSMUSG00000018379Srsf19189.617ENSPMEG00000002388-9885.714Poecilia_mexicana
ENSMUSG00000018379Srsf19191.758ENSPREG00000009667srsf1a9885.185Poecilia_reticulata
ENSMUSG00000018379Srsf1100100.000ENSPPYG00000008240SRSF1100100.000Pongo_abelii
ENSMUSG00000018379Srsf1100100.000ENSPCAG00000005199SRSF1100100.000Procavia_capensis
ENSMUSG00000018379Srsf19772.500ENSPCOG00000025736-9576.531Propithecus_coquereli
ENSMUSG00000018379Srsf1100100.000ENSPCOG00000023654-100100.000Propithecus_coquereli
ENSMUSG00000018379Srsf175100.000ENSPVAG00000000519-75100.000Pteropus_vampyrus
ENSMUSG00000018379Srsf110094.355ENSPNAG00000014601srsf1b10094.355Pygocentrus_nattereri
ENSMUSG00000018379Srsf19493.162ENSPNAG00000022241srsf1a9890.947Pygocentrus_nattereri
ENSMUSG00000018379Srsf1100100.000ENSRNOG00000050323Srsf1100100.000Rattus_norvegicus
ENSMUSG00000018379Srsf1100100.000ENSRBIG00000034445-100100.000Rhinopithecus_bieti
ENSMUSG00000018379Srsf1100100.000ENSRROG00000041506-100100.000Rhinopithecus_roxellana
ENSMUSG00000018379Srsf1100100.000ENSSBOG00000025377-100100.000Saimiri_boliviensis_boliviensis
ENSMUSG00000018379Srsf110099.197ENSSHAG00000002552-10099.197Sarcophilus_harrisii
ENSMUSG00000018379Srsf19996.356ENSSFOG00015004800srsf1a9996.356Scleropages_formosus
ENSMUSG00000018379Srsf19487.083ENSSMAG00000009719-10086.275Scophthalmus_maximus
ENSMUSG00000018379Srsf19090.055ENSSMAG00000007018-9883.128Scophthalmus_maximus
ENSMUSG00000018379Srsf19090.608ENSSDUG00000011303-9884.362Seriola_dumerili
ENSMUSG00000018379Srsf110076.494ENSSDUG00000003929-9977.510Seriola_dumerili
ENSMUSG00000018379Srsf19283.243ENSSLDG00000016868-9982.661Seriola_lalandi_dorsalis
ENSMUSG00000018379Srsf19582.812ENSSLDG00000016895-9976.113Seriola_lalandi_dorsalis
ENSMUSG00000018379Srsf19090.608ENSSLDG00000010543-9884.362Seriola_lalandi_dorsalis
ENSMUSG00000018379Srsf192100.000ENSSARG00000010949-63100.000Sorex_araneus
ENSMUSG00000018379Srsf110098.814ENSSPUG00000000804-10098.814Sphenodon_punctatus
ENSMUSG00000018379Srsf19090.608ENSSPAG00000022562-9885.597Stegastes_partitus
ENSMUSG00000018379Srsf19287.755ENSSPAG00000014152-9984.556Stegastes_partitus
ENSMUSG00000018379Srsf1100100.000ENSSSCG00000017626-100100.000Sus_scrofa
ENSMUSG00000018379Srsf18896.774ENSTGUG00000008416-10098.370Taeniopygia_guttata
ENSMUSG00000018379Srsf19091.160ENSTRUG00000003691srsf1a9884.362Takifugu_rubripes
ENSMUSG00000018379Srsf19091.160ENSTNIG00000016223srsf1a9884.362Tetraodon_nigroviridis
ENSMUSG00000018379Srsf19298.370ENSTBEG00000015378-6398.370Tupaia_belangeri
ENSMUSG00000018379Srsf188100.000ENSTTRG00000007310SRSF1100100.000Tursiops_truncatus
ENSMUSG00000018379Srsf1100100.000ENSUAMG00000009858SRSF1100100.000Ursus_americanus
ENSMUSG00000018379Srsf1100100.000ENSUMAG00000000455-100100.000Ursus_maritimus
ENSMUSG00000018379Srsf110099.597ENSVPAG00000010094SRSF110099.597Vicugna_pacos
ENSMUSG00000018379Srsf1100100.000ENSVVUG00000011882-100100.000Vulpes_vulpes
ENSMUSG00000018379Srsf110095.968ENSXETG00000008954srsf110091.386Xenopus_tropicalis
ENSMUSG00000018379Srsf19091.713ENSXMAG00000011766srsf1a9885.185Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000380alternative mRNA splicing, via spliceosome-ISOProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000395mRNA 5'-splice site recognition-ISOProcess
GO:0001701in utero embryonic development15652482.IMPProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-ISOFunction
GO:0003729mRNA binding21984414.ISOFunction
GO:0005515protein binding20477871.21822258.23042150.23663783.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus15615787.IDAComponent
GO:0005634nucleus21984414.ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005737cytoplasm-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing15798186.IDAProcess
GO:0008380RNA splicing15652482.IGIProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0016607nuclear speck20729808.21191184.IDAComponent
GO:0016607nuclear speck-ISOComponent
GO:0033120positive regulation of RNA splicing-ISOProcess
GO:0035145exon-exon junction complex-ISOComponent
GO:0043422protein kinase B binding-ISOFunction
GO:0044547DNA topoisomerase binding-ISOFunction
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess
GO:0050733RS domain binding15798186.IPIFunction
GO:0051028mRNA transport-IEAProcess
GO:0060048cardiac muscle contraction15652482.IGIProcess
GO:0071013catalytic step 2 spliceosome-ISOComponent

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