EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000018425 (Gene tree)
Gene ID: 67487
Gene Symbol: Dhx40
Alias: 2410016C14Rik|ARG147|DDX40
Full Name: DEAH (Asp-Glu-Ala-His) box polypeptide 40
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 38901 bases
Position: chr11:86768846-86807746
Accession: 1914737
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000018569	DEAD	PF00270.29	9.1e-09	1	1
ENSMUSP00000114918	HA2	PF04408.23	3.8e-15	1	1
ENSMUSP00000018569	HA2	PF04408.23	8.7e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000018569	-	3813	XM_017314718	ENSMUSP00000018569	779 (aa)	XP_017170207	Q6PE54
ENSMUST00000131798	-	626	-	-	- (aa)	-	-
ENSMUST00000148263	-	912	-	ENSMUSP00000114918	304 (aa)	-	Q5SXR4
ENSMUST00000136977	-	641	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000018425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018425's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000018425	Dhx40	99	32.766	ENSMUSG00000040620	Dhx33	89	37.348
ENSMUSG00000018425	Dhx40	99	34.728	ENSMUSG00000029169	Dhx15	79	43.103
ENSMUSG00000018425	Dhx40	99	37.004	ENSMUSG00000024422	Dhx16	61	42.012
ENSMUSG00000018425	Dhx40	90	35.262	ENSMUSG00000027655	Dhx35	99	35.262
ENSMUSG00000018425	Dhx40	84	40.429	ENSMUSG00000037993	Dhx38	54	38.549
ENSMUSG00000018425	Dhx40	58	31.417	ENSMUSG00000054003	Tdrd9	89	31.417
ENSMUSG00000018425	Dhx40	83	42.041	ENSMUSG00000029480	Dhx37	64	42.041
ENSMUSG00000018425	Dhx40	97	40.088	ENSMUSG00000034931	Dhx8	53	43.645

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018425	Dhx40	100	97.561	ENSG00000108406	DHX40	100	97.561	Homo_sapiens
ENSMUSG00000018425	Dhx40	100	64.671	ENSAPOG00000018707	dhx40	98	66.667	Acanthochromis_polyacanthus
ENSMUSG00000018425	Dhx40	100	97.689	ENSAMEG00000011567	DHX40	100	97.689	Ailuropoda_melanoleuca
ENSMUSG00000018425	Dhx40	91	65.871	ENSACIG00000020220	dhx40	98	65.698	Amphilophus_citrinellus
ENSMUSG00000018425	Dhx40	100	65.269	ENSAOCG00000000250	dhx40	98	66.528	Amphiprion_ocellaris
ENSMUSG00000018425	Dhx40	100	65.269	ENSAPEG00000022898	dhx40	97	66.667	Amphiprion_percula
ENSMUSG00000018425	Dhx40	91	66.152	ENSATEG00000023287	dhx40	98	65.975	Anabas_testudineus
ENSMUSG00000018425	Dhx40	100	72.455	ENSAPLG00000013368	DHX40	100	72.700	Anas_platyrhynchos
ENSMUSG00000018425	Dhx40	99	65.868	ENSACAG00000012418	DHX40	99	68.349	Anolis_carolinensis
ENSMUSG00000018425	Dhx40	100	97.689	ENSANAG00000019888	DHX40	100	97.959	Aotus_nancymaae
ENSMUSG00000018425	Dhx40	100	62.275	ENSACLG00000024213	dhx40	97	66.250	Astatotilapia_calliptera
ENSMUSG00000018425	Dhx40	100	64.072	ENSAMXG00000002031	dhx40	95	64.942	Astyanax_mexicanus
ENSMUSG00000018425	Dhx40	100	97.689	ENSBTAG00000017868	DHX40	100	97.689	Bos_taurus
ENSMUSG00000018425	Dhx40	100	97.433	ENSCJAG00000001554	DHX40	100	97.433	Callithrix_jacchus
ENSMUSG00000018425	Dhx40	100	97.818	ENSCAFG00000017625	DHX40	100	97.055	Canis_familiaris
ENSMUSG00000018425	Dhx40	100	97.946	ENSCAFG00020026016	DHX40	91	97.946	Canis_lupus_dingo
ENSMUSG00000018425	Dhx40	100	97.818	ENSCHIG00000016173	DHX40	100	97.818	Capra_hircus
ENSMUSG00000018425	Dhx40	100	97.561	ENSTSYG00000034797	DHX40	100	98.273	Carlito_syrichta
ENSMUSG00000018425	Dhx40	87	97.727	ENSCAPG00000016034	DHX40	100	97.727	Cavia_aperea
ENSMUSG00000018425	Dhx40	100	97.697	ENSCPOG00000003432	DHX40	100	97.697	Cavia_porcellus
ENSMUSG00000018425	Dhx40	100	92.814	ENSCCAG00000028712	DHX40	100	97.357	Cebus_capucinus
ENSMUSG00000018425	Dhx40	100	93.231	ENSCATG00000030038	DHX40	100	93.231	Cercocebus_atys
ENSMUSG00000018425	Dhx40	100	99.013	ENSCLAG00000012016	DHX40	100	99.013	Chinchilla_lanigera
ENSMUSG00000018425	Dhx40	82	93.730	ENSCSAG00000005860	DHX40	99	93.730	Chlorocebus_sabaeus
ENSMUSG00000018425	Dhx40	100	93.413	ENSCHOG00000004423	DHX40	100	97.841	Choloepus_hoffmanni
ENSMUSG00000018425	Dhx40	99	74.251	ENSCPBG00000006085	DHX40	97	74.623	Chrysemys_picta_bellii
ENSMUSG00000018425	Dhx40	100	97.818	ENSCANG00000038492	DHX40	100	98.116	Colobus_angolensis_palliatus
ENSMUSG00000018425	Dhx40	100	99.230	ENSCGRG00001000389	Dhx40	100	99.230	Cricetulus_griseus_chok1gshd
ENSMUSG00000018425	Dhx40	100	99.230	ENSCGRG00000009491	Dhx40	100	99.230	Cricetulus_griseus_crigri
ENSMUSG00000018425	Dhx40	100	65.868	ENSCSEG00000002696	dhx40	98	65.881	Cynoglossus_semilaevis
ENSMUSG00000018425	Dhx40	100	62.874	ENSCVAG00000018991	dhx40	97	66.944	Cyprinodon_variegatus
ENSMUSG00000018425	Dhx40	94	66.118	ENSDARG00000041586	dhx40	99	66.118	Danio_rerio
ENSMUSG00000018425	Dhx40	100	97.818	ENSDNOG00000025497	DHX40	100	97.818	Dasypus_novemcinctus
ENSMUSG00000018425	Dhx40	100	94.608	ENSDORG00000006521	Dhx40	100	94.608	Dipodomys_ordii
ENSMUSG00000018425	Dhx40	91	91.339	ENSETEG00000018771	DHX40	87	93.333	Echinops_telfairi
ENSMUSG00000018425	Dhx40	100	97.818	ENSEASG00005002476	DHX40	100	97.818	Equus_asinus_asinus
ENSMUSG00000018425	Dhx40	100	97.689	ENSECAG00000018606	DHX40	100	97.689	Equus_caballus
ENSMUSG00000018425	Dhx40	100	93.453	ENSEEUG00000002531	DHX40	100	93.453	Erinaceus_europaeus
ENSMUSG00000018425	Dhx40	99	64.242	ENSELUG00000008644	dhx40	97	65.560	Esox_lucius
ENSMUSG00000018425	Dhx40	100	98.074	ENSFCAG00000001409	DHX40	100	98.074	Felis_catus
ENSMUSG00000018425	Dhx40	100	70.060	ENSFALG00000005587	DHX40	99	69.631	Ficedula_albicollis
ENSMUSG00000018425	Dhx40	100	99.013	ENSFDAG00000017214	DHX40	100	99.013	Fukomys_damarensis
ENSMUSG00000018425	Dhx40	100	63.473	ENSFHEG00000001190	dhx40	99	65.205	Fundulus_heteroclitus
ENSMUSG00000018425	Dhx40	99	59.880	ENSGMOG00000001188	dhx40	99	63.077	Gadus_morhua
ENSMUSG00000018425	Dhx40	98	70.060	ENSGALG00000005126	DHX40	100	70.886	Gallus_gallus
ENSMUSG00000018425	Dhx40	100	63.473	ENSGAFG00000014480	dhx40	98	66.252	Gambusia_affinis
ENSMUSG00000018425	Dhx40	99	65.269	ENSGACG00000006300	dhx40	99	65.145	Gasterosteus_aculeatus
ENSMUSG00000018425	Dhx40	99	72.455	ENSGAGG00000024012	DHX40	97	73.865	Gopherus_agassizii
ENSMUSG00000018425	Dhx40	75	88.043	ENSGGOG00000042982	-	100	89.610	Gorilla_gorilla
ENSMUSG00000018425	Dhx40	100	62.275	ENSHBUG00000022398	dhx40	97	66.389	Haplochromis_burtoni
ENSMUSG00000018425	Dhx40	100	99.013	ENSHGLG00000006600	DHX40	100	99.013	Heterocephalus_glaber_female
ENSMUSG00000018425	Dhx40	88	79.326	ENSHGLG00000006411	-	96	79.326	Heterocephalus_glaber_female
ENSMUSG00000018425	Dhx40	100	99.013	ENSHGLG00100009935	-	100	99.013	Heterocephalus_glaber_male
ENSMUSG00000018425	Dhx40	88	79.472	ENSHGLG00100009091	-	96	79.472	Heterocephalus_glaber_male
ENSMUSG00000018425	Dhx40	99	63.855	ENSHCOG00000012913	dhx40	96	64.910	Hippocampus_comes
ENSMUSG00000018425	Dhx40	100	62.275	ENSIPUG00000015673	dhx40	97	64.993	Ictalurus_punctatus
ENSMUSG00000018425	Dhx40	100	99.013	ENSSTOG00000016219	DHX40	100	99.013	Ictidomys_tridecemlineatus
ENSMUSG00000018425	Dhx40	100	94.095	ENSJJAG00000010433	Dhx40	100	94.095	Jaculus_jaculus
ENSMUSG00000018425	Dhx40	100	65.269	ENSKMAG00000003505	dhx40	98	65.975	Kryptolebias_marmoratus
ENSMUSG00000018425	Dhx40	100	63.473	ENSLBEG00000018707	dhx40	98	67.083	Labrus_bergylta
ENSMUSG00000018425	Dhx40	99	66.456	ENSLACG00000008892	DHX40	98	68.471	Latimeria_chalumnae
ENSMUSG00000018425	Dhx40	92	62.983	ENSLOCG00000003916	dhx40	99	62.983	Lepisosteus_oculatus
ENSMUSG00000018425	Dhx40	100	97.818	ENSLAFG00000000087	DHX40	100	97.818	Loxodonta_africana
ENSMUSG00000018425	Dhx40	100	97.561	ENSMFAG00000041526	DHX40	100	97.959	Macaca_fascicularis
ENSMUSG00000018425	Dhx40	100	92.426	ENSMNEG00000043921	DHX40	100	92.426	Macaca_nemestrina
ENSMUSG00000018425	Dhx40	100	97.561	ENSMLEG00000043033	DHX40	100	97.959	Mandrillus_leucophaeus
ENSMUSG00000018425	Dhx40	91	66.011	ENSMAMG00000001985	dhx40	98	65.837	Mastacembelus_armatus
ENSMUSG00000018425	Dhx40	100	62.275	ENSMZEG00005013826	dhx40	97	66.250	Maylandia_zebra
ENSMUSG00000018425	Dhx40	100	72.327	ENSMGAG00000007238	DHX40	100	70.652	Meleagris_gallopavo
ENSMUSG00000018425	Dhx40	100	89.730	ENSMAUG00000014047	Dhx40	100	89.730	Mesocricetus_auratus
ENSMUSG00000018425	Dhx40	100	98.074	ENSMICG00000027647	DHX40	100	98.074	Microcebus_murinus
ENSMUSG00000018425	Dhx40	100	99.013	ENSMOCG00000022697	Dhx40	100	99.013	Microtus_ochrogaster
ENSMUSG00000018425	Dhx40	99	62.874	ENSMMOG00000005353	dhx40	97	65.278	Mola_mola
ENSMUSG00000018425	Dhx40	99	75.518	ENSMODG00000014468	DHX40	99	75.518	Monodelphis_domestica
ENSMUSG00000018425	Dhx40	92	66.113	ENSMALG00000012529	dhx40	98	66.113	Monopterus_albus
ENSMUSG00000018425	Dhx40	100	99.872	MGP_CAROLIEiJ_G0016920	Dhx40	100	99.872	Mus_caroli
ENSMUSG00000018425	Dhx40	100	99.671	MGP_PahariEiJ_G0018050	Dhx40	100	99.671	Mus_pahari
ENSMUSG00000018425	Dhx40	100	100.000	MGP_SPRETEiJ_G0017766	Dhx40	100	100.000	Mus_spretus
ENSMUSG00000018425	Dhx40	100	97.946	ENSMPUG00000015213	DHX40	100	97.946	Mustela_putorius_furo
ENSMUSG00000018425	Dhx40	100	95.897	ENSMLUG00000003644	DHX40	100	95.897	Myotis_lucifugus
ENSMUSG00000018425	Dhx40	100	98.684	ENSNGAG00000014507	Dhx40	100	98.684	Nannospalax_galili
ENSMUSG00000018425	Dhx40	100	62.874	ENSNBRG00000018144	dhx40	98	65.837	Neolamprologus_brichardi
ENSMUSG00000018425	Dhx40	73	82.500	ENSMEUG00000002887	-	88	82.500	Notamacropus_eugenii
ENSMUSG00000018425	Dhx40	100	99.013	ENSODEG00000013635	DHX40	100	99.013	Octodon_degus
ENSMUSG00000018425	Dhx40	100	62.874	ENSONIG00000005195	dhx40	100	66.205	Oreochromis_niloticus
ENSMUSG00000018425	Dhx40	95	76.478	ENSOANG00000008516	DHX40	99	76.478	Ornithorhynchus_anatinus
ENSMUSG00000018425	Dhx40	99	62.275	ENSORLG00000014185	dhx40	99	65.746	Oryzias_latipes
ENSMUSG00000018425	Dhx40	99	62.275	ENSORLG00015016235	dhx40	99	65.565	Oryzias_latipes_hsok
ENSMUSG00000018425	Dhx40	99	62.275	ENSOMEG00000006570	dhx40	99	66.528	Oryzias_melastigma
ENSMUSG00000018425	Dhx40	100	98.074	ENSOGAG00000007790	DHX40	100	98.074	Otolemur_garnettii
ENSMUSG00000018425	Dhx40	100	97.818	ENSOARG00000012632	DHX40	100	97.818	Ovis_aries
ENSMUSG00000018425	Dhx40	100	97.176	ENSPPAG00000032782	DHX40	100	97.176	Pan_paniscus
ENSMUSG00000018425	Dhx40	100	98.074	ENSPPRG00000010073	DHX40	100	98.074	Panthera_pardus
ENSMUSG00000018425	Dhx40	100	97.561	ENSPTIG00000006557	DHX40	100	97.959	Panthera_tigris_altaica
ENSMUSG00000018425	Dhx40	100	97.561	ENSPANG00000022266	DHX40	100	97.959	Papio_anubis
ENSMUSG00000018425	Dhx40	100	58.683	ENSPKIG00000013016	dhx40	97	64.404	Paramormyrops_kingsleyae
ENSMUSG00000018425	Dhx40	99	73.054	ENSPSIG00000010463	DHX40	95	71.846	Pelodiscus_sinensis
ENSMUSG00000018425	Dhx40	100	64.072	ENSPMGG00000015257	dhx40	97	66.156	Periophthalmus_magnuspinnatus
ENSMUSG00000018425	Dhx40	100	99.342	ENSPEMG00000013338	Dhx40	100	99.342	Peromyscus_maniculatus_bairdii
ENSMUSG00000018425	Dhx40	93	78.650	ENSPCIG00000021874	DHX40	95	78.650	Phascolarctos_cinereus
ENSMUSG00000018425	Dhx40	100	64.072	ENSPFOG00000006579	dhx40	98	65.837	Poecilia_formosa
ENSMUSG00000018425	Dhx40	100	64.072	ENSPLAG00000007062	dhx40	98	65.837	Poecilia_latipinna
ENSMUSG00000018425	Dhx40	100	64.072	ENSPMEG00000008446	dhx40	98	65.975	Poecilia_mexicana
ENSMUSG00000018425	Dhx40	100	64.072	ENSPREG00000005584	dhx40	98	66.113	Poecilia_reticulata
ENSMUSG00000018425	Dhx40	100	94.480	ENSPPYG00000008812	DHX40	100	94.480	Pongo_abelii
ENSMUSG00000018425	Dhx40	80	98.701	ENSPCAG00000006468	DHX40	83	98.246	Procavia_capensis
ENSMUSG00000018425	Dhx40	96	93.413	ENSPCOG00000008219	DHX40	100	89.189	Propithecus_coquereli
ENSMUSG00000018425	Dhx40	100	62.275	ENSPNYG00000013343	dhx40	97	66.250	Pundamilia_nyererei
ENSMUSG00000018425	Dhx40	100	63.473	ENSPNAG00000024815	dhx40	97	61.506	Pygocentrus_nattereri
ENSMUSG00000018425	Dhx40	100	99.230	ENSRNOG00000004549	Dhx40	100	99.230	Rattus_norvegicus
ENSMUSG00000018425	Dhx40	100	97.433	ENSSBOG00000024911	DHX40	100	97.959	Saimiri_boliviensis_boliviensis
ENSMUSG00000018425	Dhx40	99	74.805	ENSSHAG00000016859	DHX40	99	74.805	Sarcophilus_harrisii
ENSMUSG00000018425	Dhx40	100	62.275	ENSSFOG00015003020	dhx40	97	66.158	Scleropages_formosus
ENSMUSG00000018425	Dhx40	100	64.072	ENSSMAG00000001178	dhx40	98	65.928	Scophthalmus_maximus
ENSMUSG00000018425	Dhx40	100	64.671	ENSSDUG00000012511	dhx40	98	65.975	Seriola_dumerili
ENSMUSG00000018425	Dhx40	100	64.671	ENSSLDG00000010146	dhx40	98	66.252	Seriola_lalandi_dorsalis
ENSMUSG00000018425	Dhx40	88	100.000	ENSSARG00000009800	DHX40	87	97.387	Sorex_araneus
ENSMUSG00000018425	Dhx40	99	71.257	ENSSPUG00000016309	DHX40	96	74.826	Sphenodon_punctatus
ENSMUSG00000018425	Dhx40	92	65.512	ENSSPAG00000015901	dhx40	99	65.484	Stegastes_partitus
ENSMUSG00000018425	Dhx40	100	98.074	ENSSSCG00000017665	DHX40	100	98.074	Sus_scrofa
ENSMUSG00000018425	Dhx40	100	71.257	ENSTGUG00000007512	DHX40	100	70.548	Taeniopygia_guttata
ENSMUSG00000018425	Dhx40	92	62.778	ENSTRUG00000010369	dhx40	97	62.778	Takifugu_rubripes
ENSMUSG00000018425	Dhx40	92	61.944	ENSTNIG00000004503	dhx40	100	61.944	Tetraodon_nigroviridis
ENSMUSG00000018425	Dhx40	100	96.791	ENSTBEG00000014980	DHX40	100	96.791	Tupaia_belangeri
ENSMUSG00000018425	Dhx40	100	93.413	ENSTTRG00000017203	DHX40	99	93.170	Tursiops_truncatus
ENSMUSG00000018425	Dhx40	100	97.946	ENSUAMG00000009734	DHX40	100	98.235	Ursus_americanus
ENSMUSG00000018425	Dhx40	100	97.689	ENSUMAG00000022721	DHX40	100	97.689	Ursus_maritimus
ENSMUSG00000018425	Dhx40	96	97.995	ENSVPAG00000009355	DHX40	100	97.995	Vicugna_pacos
ENSMUSG00000018425	Dhx40	100	97.946	ENSVVUG00000013502	DHX40	91	97.946	Vulpes_vulpes
ENSMUSG00000018425	Dhx40	95	81.250	ENSXETG00000010939	dhx40	99	66.667	Xenopus_tropicalis
ENSMUSG00000018425	Dhx40	100	64.671	ENSXCOG00000001822	dhx40	96	66.150	Xiphophorus_couchianus
ENSMUSG00000018425	Dhx40	100	64.671	ENSXMAG00000012466	dhx40	98	66.113	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0034459	ATP-dependent 3'-5' RNA helicase activity	21873635.	IBA	Function