EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000018474 (Gene tree)
Gene ID: 216848
Gene Symbol: Chd3
Alias: 2600010P09Rik|Chd7|Mi-2 alpha|Prp7|Prp9-1
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 26134 bases
Position: chr11:69343273-69369406
Accession: 1344395
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000122137	ResIII	PF04851.15	4.4e-08	1	1
ENSMUSP00000090649	ResIII	PF04851.15	4.8e-08	1	1
ENSMUSP00000104301	ResIII	PF04851.15	5e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000128981	-	5657	-	ENSMUSP00000122137	1886 (aa)	-	F7C528
ENSMUST00000154046	-	453	-	ENSMUSP00000121192	151 (aa)	-	B0QZH7
ENSMUST00000108661	-	7261	XM_006532880	ENSMUSP00000104301	2055 (aa)	XP_006532943	B1AR17
ENSMUST00000092971	-	6066	XM_006532884	ENSMUSP00000090649	2021 (aa)	XP_006532947	E9Q614
ENSMUST00000122992	-	2153	-	-	- (aa)	-	-
ENSMUST00000151436	-	591	-	ENSMUSP00000118172	197 (aa)	-	F6V4V3
ENSMUST00000135909	-	1882	-	-	- (aa)	-	-
ENSMUST00000144332	-	432	-	-	- (aa)	-	-
ENSMUST00000146930	-	747	-	-	- (aa)	-	-
ENSMUST00000144701	-	430	-	ENSMUSP00000114520	143 (aa)	-	B0QZH8

Gene Model

Click here to download ENSMUSG00000018474's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018474's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000018474	Chd3	95	71.160	ENSMUSG00000005045	Chd5	97	70.202
ENSMUSG00000018474	Chd3	91	80.841	ENSMUSG00000063870	Chd4	95	70.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018474	Chd3	100	96.946	ENSG00000170004	CHD3	100	96.946	Homo_sapiens
ENSMUSG00000018474	Chd3	88	76.151	ENSAPOG00000005614	chd3	94	79.771	Acanthochromis_polyacanthus
ENSMUSG00000018474	Chd3	66	96.193	ENSAMEG00000003025	-	100	96.193	Ailuropoda_melanoleuca
ENSMUSG00000018474	Chd3	88	75.810	ENSACIG00000019671	chd3	99	79.202	Amphilophus_citrinellus
ENSMUSG00000018474	Chd3	95	80.546	ENSAOCG00000023784	chd3	97	80.901	Amphiprion_ocellaris
ENSMUSG00000018474	Chd3	95	79.863	ENSAPEG00000006341	chd3	96	76.098	Amphiprion_percula
ENSMUSG00000018474	Chd3	94	80.969	ENSATEG00000000848	chd3	99	73.905	Anabas_testudineus
ENSMUSG00000018474	Chd3	99	84.977	ENSACAG00000004276	CHD3	95	84.232	Anolis_carolinensis
ENSMUSG00000018474	Chd3	99	93.016	ENSANAG00000034323	CHD3	99	97.181	Aotus_nancymaae
ENSMUSG00000018474	Chd3	98	74.706	ENSACLG00000009222	chd3	99	74.425	Astatotilapia_calliptera
ENSMUSG00000018474	Chd3	100	96.219	ENSBTAG00000014377	CHD3	100	96.219	Bos_taurus
ENSMUSG00000018474	Chd3	100	97.136	ENSCJAG00000014766	CHD3	100	97.136	Callithrix_jacchus
ENSMUSG00000018474	Chd3	99	95.518	ENSCAFG00000016859	CHD3	98	97.005	Canis_familiaris
ENSMUSG00000018474	Chd3	96	97.060	ENSCAFG00020007422	CHD3	100	96.894	Canis_lupus_dingo
ENSMUSG00000018474	Chd3	99	95.625	ENSCHIG00000016737	CHD3	99	96.956	Capra_hircus
ENSMUSG00000018474	Chd3	99	97.667	ENSTSYG00000035658	CHD3	98	97.523	Carlito_syrichta
ENSMUSG00000018474	Chd3	99	92.865	ENSCAPG00000014864	CHD3	99	93.854	Cavia_aperea
ENSMUSG00000018474	Chd3	99	95.573	ENSCPOG00000022653	CHD3	99	96.474	Cavia_porcellus
ENSMUSG00000018474	Chd3	100	96.895	ENSCCAG00000034792	CHD3	100	96.895	Cebus_capucinus
ENSMUSG00000018474	Chd3	100	96.801	ENSCATG00000041717	CHD3	100	96.801	Cercocebus_atys
ENSMUSG00000018474	Chd3	99	97.508	ENSCLAG00000010523	CHD3	100	97.417	Chinchilla_lanigera
ENSMUSG00000018474	Chd3	99	95.729	ENSCSAG00000011122	CHD3	99	97.160	Chlorocebus_sabaeus
ENSMUSG00000018474	Chd3	93	83.750	ENSCPBG00000011966	CHD3	99	87.097	Chrysemys_picta_bellii
ENSMUSG00000018474	Chd3	99	97.508	ENSCANG00000037641	CHD3	98	97.420	Colobus_angolensis_palliatus
ENSMUSG00000018474	Chd3	99	98.462	ENSCGRG00001011306	Chd3	100	98.346	Cricetulus_griseus_chok1gshd
ENSMUSG00000018474	Chd3	94	98.438	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
ENSMUSG00000018474	Chd3	92	83.650	ENSCSEG00000004489	chd3	98	78.351	Cynoglossus_semilaevis
ENSMUSG00000018474	Chd3	96	74.261	ENSCVAG00000007293	chd3	99	74.772	Cyprinodon_variegatus
ENSMUSG00000018474	Chd3	95	77.661	ENSDARG00000021405	chd3	99	76.119	Danio_rerio
ENSMUSG00000018474	Chd3	99	80.249	ENSDNOG00000047846	CHD3	98	81.667	Dasypus_novemcinctus
ENSMUSG00000018474	Chd3	99	97.031	ENSDORG00000010713	Chd3	100	96.901	Dipodomys_ordii
ENSMUSG00000018474	Chd3	99	88.854	ENSETEG00000017733	CHD3	100	90.301	Echinops_telfairi
ENSMUSG00000018474	Chd3	52	77.575	ENSEBUG00000008310	chd3	99	69.962	Eptatretus_burgeri
ENSMUSG00000018474	Chd3	93	95.541	ENSEASG00005019360	CHD3	100	97.004	Equus_asinus_asinus
ENSMUSG00000018474	Chd3	93	95.541	ENSECAG00000010051	CHD3	100	97.059	Equus_caballus
ENSMUSG00000018474	Chd3	89	93.443	ENSEEUG00000015205	CHD3	92	94.444	Erinaceus_europaeus
ENSMUSG00000018474	Chd3	81	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSMUSG00000018474	Chd3	99	95.052	ENSFCAG00000009629	CHD3	98	95.827	Felis_catus
ENSMUSG00000018474	Chd3	99	93.021	ENSFDAG00000008220	CHD3	99	94.571	Fukomys_damarensis
ENSMUSG00000018474	Chd3	89	80.000	ENSGMOG00000013599	chd3	91	80.609	Gadus_morhua
ENSMUSG00000018474	Chd3	62	74.872	ENSGAFG00000004055	chd3	99	75.983	Gambusia_affinis
ENSMUSG00000018474	Chd3	99	70.466	ENSGACG00000019275	chd3	90	73.854	Gasterosteus_aculeatus
ENSMUSG00000018474	Chd3	77	86.490	ENSGAGG00000013164	CHD3	98	86.694	Gopherus_agassizii
ENSMUSG00000018474	Chd3	99	97.561	ENSGGOG00000013496	CHD3	98	97.472	Gorilla_gorilla
ENSMUSG00000018474	Chd3	99	97.349	ENSHGLG00000012017	CHD3	100	96.880	Heterocephalus_glaber_female
ENSMUSG00000018474	Chd3	89	89.286	ENSHGLG00100013902	CHD3	99	89.362	Heterocephalus_glaber_male
ENSMUSG00000018474	Chd3	97	72.136	ENSHCOG00000010170	chd3	96	72.459	Hippocampus_comes
ENSMUSG00000018474	Chd3	93	73.239	ENSIPUG00000003271	chd3	94	78.922	Ictalurus_punctatus
ENSMUSG00000018474	Chd3	99	97.508	ENSSTOG00000025907	CHD3	100	97.417	Ictidomys_tridecemlineatus
ENSMUSG00000018474	Chd3	99	96.660	ENSJJAG00000017633	Chd3	100	96.539	Jaculus_jaculus
ENSMUSG00000018474	Chd3	87	90.047	ENSKMAG00000019292	chd3	97	75.511	Kryptolebias_marmoratus
ENSMUSG00000018474	Chd3	96	71.398	ENSLBEG00000028485	chd3	91	87.826	Labrus_bergylta
ENSMUSG00000018474	Chd3	99	74.783	ENSLACG00000008031	CHD3	98	74.987	Latimeria_chalumnae
ENSMUSG00000018474	Chd3	98	76.564	ENSLOCG00000013965	chd3	97	76.828	Lepisosteus_oculatus
ENSMUSG00000018474	Chd3	98	91.857	ENSLAFG00000000572	CHD3	100	93.432	Loxodonta_africana
ENSMUSG00000018474	Chd3	99	97.561	ENSMFAG00000020113	CHD3	98	97.472	Macaca_fascicularis
ENSMUSG00000018474	Chd3	99	93.073	ENSMMUG00000022221	CHD3	99	93.942	Macaca_mulatta
ENSMUSG00000018474	Chd3	99	97.561	ENSMNEG00000001728	CHD3	99	96.619	Macaca_nemestrina
ENSMUSG00000018474	Chd3	99	97.614	ENSMLEG00000032249	CHD3	98	97.523	Mandrillus_leucophaeus
ENSMUSG00000018474	Chd3	88	76.159	ENSMAMG00000000564	chd3	94	86.705	Mastacembelus_armatus
ENSMUSG00000018474	Chd3	99	98.249	ENSMAUG00000013873	Chd3	100	97.133	Mesocricetus_auratus
ENSMUSG00000018474	Chd3	100	96.846	ENSMICG00000008741	CHD3	100	96.846	Microcebus_murinus
ENSMUSG00000018474	Chd3	99	98.515	ENSMOCG00000004848	Chd3	100	98.394	Microtus_ochrogaster
ENSMUSG00000018474	Chd3	98	74.399	ENSMMOG00000012699	chd3	99	73.816	Mola_mola
ENSMUSG00000018474	Chd3	93	93.924	ENSMODG00000007509	CHD3	100	93.677	Monodelphis_domestica
ENSMUSG00000018474	Chd3	99	99.576	MGP_CAROLIEiJ_G0016564	Chd3	100	99.576	Mus_caroli
ENSMUSG00000018474	Chd3	99	99.416	MGP_PahariEiJ_G0017695	Chd3	100	99.416	Mus_pahari
ENSMUSG00000018474	Chd3	100	99.805	MGP_SPRETEiJ_G0017400	Chd3	100	99.841	Mus_spretus
ENSMUSG00000018474	Chd3	87	95.221	ENSMPUG00000008861	CHD3	100	96.911	Mustela_putorius_furo
ENSMUSG00000018474	Chd3	99	94.329	ENSMLUG00000014643	-	98	95.692	Myotis_lucifugus
ENSMUSG00000018474	Chd3	99	96.510	ENSNGAG00000000773	Chd3	98	97.920	Nannospalax_galili
ENSMUSG00000018474	Chd3	88	76.313	ENSNBRG00000000636	chd3	97	76.850	Neolamprologus_brichardi
ENSMUSG00000018474	Chd3	99	94.592	ENSNLEG00000009770	CHD3	100	94.139	Nomascus_leucogenys
ENSMUSG00000018474	Chd3	88	89.120	ENSMEUG00000005852	CHD3	87	90.437	Notamacropus_eugenii
ENSMUSG00000018474	Chd3	95	94.275	ENSOPRG00000011069	CHD3	100	95.522	Ochotona_princeps
ENSMUSG00000018474	Chd3	99	95.625	ENSODEG00000017785	CHD3	99	97.057	Octodon_degus
ENSMUSG00000018474	Chd3	98	74.478	ENSONIG00000009292	chd3	100	75.000	Oreochromis_niloticus
ENSMUSG00000018474	Chd3	99	90.550	ENSOCUG00000029299	CHD3	100	91.671	Oryctolagus_cuniculus
ENSMUSG00000018474	Chd3	85	71.323	ENSORLG00000007107	chd3	93	71.692	Oryzias_latipes
ENSMUSG00000018474	Chd3	55	82.000	ENSORLG00020008387	chd3	95	73.257	Oryzias_latipes_hni
ENSMUSG00000018474	Chd3	88	77.116	ENSOMEG00000013691	chd3	99	77.950	Oryzias_melastigma
ENSMUSG00000018474	Chd3	99	95.208	ENSOGAG00000003216	CHD3	99	96.651	Otolemur_garnettii
ENSMUSG00000018474	Chd3	99	92.460	ENSOARG00000017855	CHD3	99	94.580	Ovis_aries
ENSMUSG00000018474	Chd3	99	95.196	ENSPPAG00000032886	CHD3	98	95.170	Pan_paniscus
ENSMUSG00000018474	Chd3	99	96.925	ENSPPRG00000000626	CHD3	99	95.823	Panthera_pardus
ENSMUSG00000018474	Chd3	100	97.042	ENSPTRG00000008714	CHD3	100	97.042	Pan_troglodytes
ENSMUSG00000018474	Chd3	100	95.589	ENSPANG00000023938	CHD3	100	95.589	Papio_anubis
ENSMUSG00000018474	Chd3	95	81.011	ENSPKIG00000006305	chd3	99	80.063	Paramormyrops_kingsleyae
ENSMUSG00000018474	Chd3	57	90.055	ENSPSIG00000010177	CHD3	98	90.328	Pelodiscus_sinensis
ENSMUSG00000018474	Chd3	99	96.665	ENSPEMG00000014262	Chd3	99	97.920	Peromyscus_maniculatus_bairdii
ENSMUSG00000018474	Chd3	99	93.309	ENSPCIG00000005442	CHD3	99	93.125	Phascolarctos_cinereus
ENSMUSG00000018474	Chd3	98	71.660	ENSPFOG00000012464	chd3	92	73.307	Poecilia_formosa
ENSMUSG00000018474	Chd3	83	87.391	ENSPLAG00000002887	chd3	94	79.796	Poecilia_latipinna
ENSMUSG00000018474	Chd3	56	81.469	ENSPMEG00000016725	chd3	93	80.616	Poecilia_mexicana
ENSMUSG00000018474	Chd3	99	75.679	ENSPREG00000011044	chd3	98	77.842	Poecilia_reticulata
ENSMUSG00000018474	Chd3	98	92.332	ENSPPYG00000007940	CHD3	98	93.895	Pongo_abelii
ENSMUSG00000018474	Chd3	96	95.463	ENSPCAG00000004350	CHD3	96	96.552	Procavia_capensis
ENSMUSG00000018474	Chd3	99	97.508	ENSPCOG00000020952	CHD3	100	96.864	Propithecus_coquereli
ENSMUSG00000018474	Chd3	86	93.480	ENSPVAG00000016344	CHD3	87	94.841	Pteropus_vampyrus
ENSMUSG00000018474	Chd3	97	78.157	ENSPNAG00000020393	chd3	98	81.884	Pygocentrus_nattereri
ENSMUSG00000018474	Chd3	93	96.654	ENSRNOG00000009722	Chd3	100	98.529	Rattus_norvegicus
ENSMUSG00000018474	Chd3	99	94.139	ENSRBIG00000033562	CHD3	99	93.545	Rhinopithecus_bieti
ENSMUSG00000018474	Chd3	99	97.614	ENSRROG00000029554	CHD3	98	97.523	Rhinopithecus_roxellana
ENSMUSG00000018474	Chd3	99	97.667	ENSSBOG00000020719	CHD3	99	97.228	Saimiri_boliviensis_boliviensis
ENSMUSG00000018474	Chd3	99	93.959	ENSSHAG00000014412	CHD3	100	93.779	Sarcophilus_harrisii
ENSMUSG00000018474	Chd3	90	80.406	ENSSFOG00015023123	chd3	98	75.595	Scleropages_formosus
ENSMUSG00000018474	Chd3	88	76.471	ENSSMAG00000006451	chd3	99	76.817	Scophthalmus_maximus
ENSMUSG00000018474	Chd3	58	72.161	ENSSDUG00000005792	chd3	95	72.943	Seriola_dumerili
ENSMUSG00000018474	Chd3	95	80.205	ENSSPAG00000013694	chd3	97	81.443	Stegastes_partitus
ENSMUSG00000018474	Chd3	99	96.622	ENSSSCG00000021363	CHD3	100	96.952	Sus_scrofa
ENSMUSG00000018474	Chd3	78	76.311	ENSTRUG00000014990	chd3	95	72.384	Takifugu_rubripes
ENSMUSG00000018474	Chd3	98	74.060	ENSTNIG00000012998	chd3	99	72.746	Tetraodon_nigroviridis
ENSMUSG00000018474	Chd3	67	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSMUSG00000018474	Chd3	99	95.709	ENSTTRG00000010295	CHD3	97	97.468	Tursiops_truncatus
ENSMUSG00000018474	Chd3	93	94.216	ENSUAMG00000005475	CHD3	98	97.009	Ursus_americanus
ENSMUSG00000018474	Chd3	58	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSMUSG00000018474	Chd3	98	97.126	ENSVVUG00000028011	CHD3	99	96.807	Vulpes_vulpes
ENSMUSG00000018474	Chd3	99	73.035	ENSXETG00000012991	chd3	92	73.632	Xenopus_tropicalis
ENSMUSG00000018474	Chd3	54	82.957	ENSXCOG00000000809	chd3	93	83.070	Xiphophorus_couchianus
ENSMUSG00000018474	Chd3	82	86.127	ENSXMAG00000016035	chd3	99	88.095	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	10204490.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005815	microtubule organizing center	-	ISO	Component
GO:0006333	chromatin assembly or disassembly	10204490.	IDA	Process
GO:0007051	spindle organization	-	ISO	Process
GO:0007098	centrosome cycle	-	ISO	Process
GO:0016581	NuRD complex	10204490.	IDA	Component
GO:0016581	NuRD complex	-	ISO	Component