EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000018554 (Gene tree)
Gene ID: 53422
Gene Symbol: Ybx2
Alias: MSY2
Full Name: Y box protein 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 5810 bases
Position: chr11:69935796-69941605
Accession: 1096372
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000104242	CSD	PF00313.22	1.2e-25	1	1
ENSMUSP00000018698	CSD	PF00313.22	1.8e-25	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000149194	-	1235	XM_006533742	ENSMUSP00000136684	164 (aa)	XP_006533805	J3QNB9
ENSMUST00000130377	-	489	-	-	- (aa)	-	-
ENSMUST00000018698	-	1673	XM_006533738	ENSMUSP00000018698	359 (aa)	XP_006533801	B2RUF0
ENSMUST00000108601	-	1351	XM_006533740	ENSMUSP00000104242	282 (aa)	XP_006533803	A0A0A0MQD2
ENSMUST00000148395	-	679	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000018554's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018554's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018554	Ybx2	96	89.493	ENSG00000006047	YBX2	99	87.654	Homo_sapiens
ENSMUSG00000018554	Ybx2	57	90.000	ENSAMEG00000016564	YBX2	87	91.146	Ailuropoda_melanoleuca
ENSMUSG00000018554	Ybx2	96	94.074	ENSANAG00000019540	YBX2	86	93.836	Aotus_nancymaae
ENSMUSG00000018554	Ybx2	100	96.667	ENSBTAG00000009126	YBX2	100	96.667	Bos_taurus
ENSMUSG00000018554	Ybx2	96	90.370	ENSCJAG00000016581	-	84	90.728	Callithrix_jacchus
ENSMUSG00000018554	Ybx2	99	88.889	ENSCJAG00000042146	-	99	88.889	Callithrix_jacchus
ENSMUSG00000018554	Ybx2	90	77.953	ENSCAFG00000005162	-	90	77.953	Canis_familiaris
ENSMUSG00000018554	Ybx2	100	95.095	ENSCAFG00000016128	-	100	95.095	Canis_familiaris
ENSMUSG00000018554	Ybx2	96	91.697	ENSCAFG00020008884	YBX2	84	92.557	Canis_lupus_dingo
ENSMUSG00000018554	Ybx2	96	96.667	ENSCHIG00000016407	YBX2	84	97.020	Capra_hircus
ENSMUSG00000018554	Ybx2	95	91.544	ENSTSYG00000030765	YBX2	92	90.876	Carlito_syrichta
ENSMUSG00000018554	Ybx2	95	96.629	ENSCAPG00000011432	YBX2	100	96.629	Cavia_aperea
ENSMUSG00000018554	Ybx2	99	95.357	ENSCPOG00000009543	YBX2	99	95.357	Cavia_porcellus
ENSMUSG00000018554	Ybx2	96	94.815	ENSCCAG00000025671	YBX2	89	93.671	Cebus_capucinus
ENSMUSG00000018554	Ybx2	96	94.074	ENSCATG00000036919	YBX2	84	94.371	Cercocebus_atys
ENSMUSG00000018554	Ybx2	99	95.714	ENSCLAG00000010306	YBX2	99	95.714	Chinchilla_lanigera
ENSMUSG00000018554	Ybx2	96	94.074	ENSCSAG00000011857	YBX2	84	94.371	Chlorocebus_sabaeus
ENSMUSG00000018554	Ybx2	97	67.754	ENSCPBG00000022288	YBX2	81	72.093	Chrysemys_picta_bellii
ENSMUSG00000018554	Ybx2	98	91.636	ENSCANG00000007129	YBX2	99	91.971	Colobus_angolensis_palliatus
ENSMUSG00000018554	Ybx2	100	98.886	ENSCGRG00001000751	Ybx2	100	98.886	Cricetulus_griseus_chok1gshd
ENSMUSG00000018554	Ybx2	96	98.162	ENSCGRG00000007683	Ybx2	99	98.519	Cricetulus_griseus_crigri
ENSMUSG00000018554	Ybx2	95	95.896	ENSDNOG00000013746	YBX2	87	95.896	Dasypus_novemcinctus
ENSMUSG00000018554	Ybx2	100	95.035	ENSDORG00000010882	Ybx2	99	96.057	Dipodomys_ordii
ENSMUSG00000018554	Ybx2	93	91.221	ENSEASG00005018928	YBX2	83	91.837	Equus_asinus_asinus
ENSMUSG00000018554	Ybx2	96	89.299	ENSECAG00000009996	YBX2	79	90.099	Equus_caballus
ENSMUSG00000018554	Ybx2	96	97.407	ENSFCAG00000018097	YBX2	85	96.689	Felis_catus
ENSMUSG00000018554	Ybx2	96	67.399	ENSGAGG00000016159	YBX2	94	72.161	Gopherus_agassizii
ENSMUSG00000018554	Ybx2	96	91.111	ENSGGOG00000007399	YBX2	84	92.053	Gorilla_gorilla
ENSMUSG00000018554	Ybx2	96	94.444	ENSHGLG00000014186	YBX2	84	94.371	Heterocephalus_glaber_female
ENSMUSG00000018554	Ybx2	95	98.507	ENSSTOG00000008630	YBX2	99	97.778	Ictidomys_tridecemlineatus
ENSMUSG00000018554	Ybx2	100	95.745	ENSJJAG00000013072	Ybx2	100	95.745	Jaculus_jaculus
ENSMUSG00000018554	Ybx2	100	97.222	ENSLAFG00000014006	YBX2	100	97.222	Loxodonta_africana
ENSMUSG00000018554	Ybx2	96	94.074	ENSMFAG00000039921	YBX2	84	94.371	Macaca_fascicularis
ENSMUSG00000018554	Ybx2	96	94.074	ENSMNEG00000045221	YBX2	84	94.371	Macaca_nemestrina
ENSMUSG00000018554	Ybx2	98	92.727	ENSMLEG00000039452	YBX2	99	93.066	Mandrillus_leucophaeus
ENSMUSG00000018554	Ybx2	99	71.685	ENSMLEG00000029266	-	84	74.101	Mandrillus_leucophaeus
ENSMUSG00000018554	Ybx2	100	98.886	ENSMAUG00000022062	Ybx2	100	98.886	Mesocricetus_auratus
ENSMUSG00000018554	Ybx2	98	95.273	ENSMICG00000012453	YBX2	99	95.620	Microcebus_murinus
ENSMUSG00000018554	Ybx2	100	98.886	ENSMOCG00000013958	Ybx2	100	98.886	Microtus_ochrogaster
ENSMUSG00000018554	Ybx2	96	76.875	ENSMODG00000017596	YBX2	81	88.294	Monodelphis_domestica
ENSMUSG00000018554	Ybx2	100	100.000	MGP_CAROLIEiJ_G0016606	Ybx2	100	100.000	Mus_caroli
ENSMUSG00000018554	Ybx2	100	100.000	MGP_PahariEiJ_G0017737	Ybx2	100	100.000	Mus_pahari
ENSMUSG00000018554	Ybx2	100	100.000	MGP_SPRETEiJ_G0017442	Ybx2	100	100.000	Mus_spretus
ENSMUSG00000018554	Ybx2	87	91.870	ENSMPUG00000010386	YBX2	93	91.870	Mustela_putorius_furo
ENSMUSG00000018554	Ybx2	96	89.630	ENSMLUG00000004686	YBX2	90	89.404	Myotis_lucifugus
ENSMUSG00000018554	Ybx2	100	95.543	ENSNGAG00000011707	Ybx2	100	95.543	Nannospalax_galili
ENSMUSG00000018554	Ybx2	96	92.593	ENSNLEG00000008063	-	100	93.000	Nomascus_leucogenys
ENSMUSG00000018554	Ybx2	96	87.778	ENSMEUG00000006947	YBX2	90	86.755	Notamacropus_eugenii
ENSMUSG00000018554	Ybx2	96	90.000	ENSOPRG00000013773	YBX2	99	90.657	Ochotona_princeps
ENSMUSG00000018554	Ybx2	100	93.972	ENSODEG00000017530	YBX2	100	93.972	Octodon_degus
ENSMUSG00000018554	Ybx2	90	95.652	ENSOCUG00000015064	YBX2	95	87.248	Oryctolagus_cuniculus
ENSMUSG00000018554	Ybx2	95	97.015	ENSOGAG00000004392	YBX2	100	97.015	Otolemur_garnettii
ENSMUSG00000018554	Ybx2	97	96.703	ENSOARG00000011562	YBX2	78	96.029	Ovis_aries
ENSMUSG00000018554	Ybx2	96	89.493	ENSPPAG00000041892	YBX2	100	90.033	Pan_paniscus
ENSMUSG00000018554	Ybx2	100	96.111	ENSPPRG00000000782	YBX2	100	96.111	Panthera_pardus
ENSMUSG00000018554	Ybx2	94	90.977	ENSPTRG00000051288	-	85	90.977	Pan_troglodytes
ENSMUSG00000018554	Ybx2	96	89.493	ENSPTRG00000008673	YBX2	89	96.104	Pan_troglodytes
ENSMUSG00000018554	Ybx2	96	93.704	ENSPANG00000024250	YBX2	84	94.314	Papio_anubis
ENSMUSG00000018554	Ybx2	96	70.111	ENSPANG00000032747	-	74	67.230	Papio_anubis
ENSMUSG00000018554	Ybx2	95	70.652	ENSPSIG00000012364	YBX2	99	74.275	Pelodiscus_sinensis
ENSMUSG00000018554	Ybx2	87	89.796	ENSPCIG00000028819	YBX2	85	91.213	Phascolarctos_cinereus
ENSMUSG00000018554	Ybx2	96	95.556	ENSPCAG00000008019	YBX2	84	95.033	Procavia_capensis
ENSMUSG00000018554	Ybx2	96	95.556	ENSPCOG00000006030	YBX2	84	95.033	Propithecus_coquereli
ENSMUSG00000018554	Ybx2	100	86.981	ENSPVAG00000005050	YBX2	100	86.981	Pteropus_vampyrus
ENSMUSG00000018554	Ybx2	100	99.443	ENSRNOG00000017117	Ybx2	100	99.443	Rattus_norvegicus
ENSMUSG00000018554	Ybx2	96	93.704	ENSRBIG00000040919	YBX2	85	94.040	Rhinopithecus_bieti
ENSMUSG00000018554	Ybx2	100	83.333	ENSRROG00000041728	YBX2	99	84.229	Rhinopithecus_roxellana
ENSMUSG00000018554	Ybx2	100	91.844	ENSSBOG00000029566	YBX2	100	91.844	Saimiri_boliviensis_boliviensis
ENSMUSG00000018554	Ybx2	90	91.304	ENSSHAG00000007786	YBX2	95	86.000	Sarcophilus_harrisii
ENSMUSG00000018554	Ybx2	100	96.111	ENSSARG00000000488	YBX2	100	96.111	Sorex_araneus
ENSMUSG00000018554	Ybx2	94	67.897	ENSSPUG00000018250	YBX2	94	72.426	Sphenodon_punctatus
ENSMUSG00000018554	Ybx2	100	96.944	ENSSSCG00000017938	YBX2	100	96.944	Sus_scrofa
ENSMUSG00000018554	Ybx2	96	93.704	ENSTBEG00000001266	YBX2	89	93.667	Tupaia_belangeri
ENSMUSG00000018554	Ybx2	60	98.462	ENSTTRG00000009780	YBX2	56	98.969	Tursiops_truncatus
ENSMUSG00000018554	Ybx2	92	91.353	ENSUAMG00000014725	YBX2	100	91.353	Ursus_americanus
ENSMUSG00000018554	Ybx2	87	89.683	ENSUMAG00000015222	YBX2	90	89.683	Ursus_maritimus
ENSMUSG00000018554	Ybx2	87	78.455	ENSVPAG00000003104	-	100	78.455	Vicugna_pacos
ENSMUSG00000018554	Ybx2	98	80.505	ENSVVUG00000012111	-	83	80.505	Vulpes_vulpes
ENSMUSG00000018554	Ybx2	93	90.672	ENSVVUG00000027830	-	100	90.672	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001650	fibrillar center	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	15665108.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	12297523.12648488.15665108.17035640.	IDA	Function
GO:0003730	mRNA 3'-UTR binding	10772793.	IDA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	11566752.12648488.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005844	polysome	17035640.	IDA	Component
GO:0007286	spermatid development	15824319.17035640.	IMP	Process
GO:0008289	lipid binding	15665108.	IDA	Function
GO:0017148	negative regulation of translation	15665108.	IDA	Process
GO:0043021	ribonucleoprotein complex binding	17035640.	IDA	Function
GO:0045182	translation regulator activity	12297523.	IDA	Function
GO:0048255	mRNA stabilization	17035640.	IMP	Process
GO:0048477	oogenesis	15824319.	IMP	Process
GO:0051100	negative regulation of binding	17035640.	IMP	Process
GO:0120162	positive regulation of cold-induced thermogenesis	28970281.	IMP	Process
GO:1990904	ribonucleoprotein complex	15665108.	IDA	Component