EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000018666 (Gene tree)
Gene ID: 12412
Gene Symbol: Cbx1
Alias: Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1
Full Name: chromobox 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 19514
Position: chr11: 96789127-96808640
Accession: 105369
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000018810	-	1824	XM_006532102	ENSMUSP00000018810	138 (aa)	XP_006532165	Q7TPM0
ENSMUST00000134585	-	2377	-	ENSMUSP00000137834	138 (aa)	-	Q7TPM0
ENSMUST00000093943	-	1251	XM_006532099	ENSMUSP00000091475	185 (aa)	XP_006532162	P83917
ENSMUST00000079702	-	912	-	ENSMUSP00000078640	150 (aa)	-	Q9CYJ8
ENSMUST00000141257	-	814	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000018666's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000018666's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018666	Cbx1	86	40.690	FBgn0003607	Su(var)205	84	43.353	Drosophila_melanogaster

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000775	chromosome, centromeric region	-	ISO	Component
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0000785	chromatin	16880268.	IDA	Component
GO:0000785	chromatin	-	ISO	Component
GO:0001939	female pronucleus	15922569.	IDA	Component
GO:0001940	male pronucleus	15922569.	IDA	Component
GO:0005515	protein binding	8978696.10330177.10562550.10747027.11882902.15322135.15947784.16547356.26496610.	IPI	Function
GO:0005634	nucleus	22770845.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005721	pericentric heterochromatin	11980720.	IDA	Component
GO:0005819	spindle	-	ISO	Component
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0010369	chromocenter	15322135.17261847.	IDA	Component
GO:0019899	enzyme binding	-	ISO	Function
GO:0042802	identical protein binding	10747027.	IPI	Function
GO:0042803	protein homodimerization activity	15947784.	IPI	Function
GO:0045892	negative regulation of transcription, DNA-templated	10562550.	IDA	Process
GO:0090734	site of DNA damage	-	ISO	Component
GO:1990226	histone methyltransferase binding	-	ISO	Function