EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148434	-	1992	-	-	- (aa)	-	-
ENSMUST00000141093	-	624	-	-	- (aa)	-	-
ENSMUST00000127042	-	1009	-	-	- (aa)	-	-
ENSMUST00000018841	-	1822	XM_006533789	ENSMUSP00000018841	526 (aa)	XP_006533852	Q9JKX4

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000018697	Aatf	99	77.818	ENSG00000275700	AATF	100	92.208	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	14627703.	IPI	Function
GO:0005634	nucleus	11071758.14627703.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	11071758.	IDA	Component
GO:0005737	cytoplasm	14627703.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0007155	cell adhesion	11071758.	IMP	Process
GO:0007346	regulation of mitotic cell cycle	11071758.	IMP	Process
GO:0019901	protein kinase binding	-	ISO	Function
GO:0032929	negative regulation of superoxide anion generation	-	ISO	Process
GO:0040016	embryonic cleavage	11071758.	IMP	Process
GO:0042254	ribosome biogenesis	11071758.	IMP	Process
GO:0042985	negative regulation of amyloid precursor protein biosynthetic process	14627703.	IDA	Process
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043522	leucine zipper domain binding	-	ISO	Function
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048156	tau protein binding	-	ISO	Function
GO:2000378	negative regulation of reactive oxygen species metabolic process	-	ISO	Process